# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-BED PF02892.15 44 ZBED1-201 - 694 6.1e-16 58.2 1.0 1 1 2.2e-19 1.3e-15 57.1 1.0 1 44 23 72 23 72 0.99 BED zinc finger Dimer_Tnp_hAT PF05699.14 86 ZBED1-201 - 694 2.9e-15 55.8 0.1 1 2 1 6.1e+03 -2.9 0.0 5 38 458 487 454 490 0.75 hAT family C-terminal dimerisation region Dimer_Tnp_hAT PF05699.14 86 ZBED1-201 - 694 2.9e-15 55.8 0.1 2 2 1.5e-18 9.2e-15 54.2 0.0 1 85 571 650 571 651 0.95 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-BED PF02892.15 44 ZBED1-202 - 694 6.1e-16 58.2 1.0 1 1 2.2e-19 1.3e-15 57.1 1.0 1 44 23 72 23 72 0.99 BED zinc finger Dimer_Tnp_hAT PF05699.14 86 ZBED1-202 - 694 2.9e-15 55.8 0.1 1 2 1 6.1e+03 -2.9 0.0 5 38 458 487 454 490 0.75 hAT family C-terminal dimerisation region Dimer_Tnp_hAT PF05699.14 86 ZBED1-202 - 694 2.9e-15 55.8 0.1 2 2 1.5e-18 9.2e-15 54.2 0.0 1 85 571 650 571 651 0.95 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-BED PF02892.15 44 ZBED1-203 - 694 6.1e-16 58.2 1.0 1 1 2.2e-19 1.3e-15 57.1 1.0 1 44 23 72 23 72 0.99 BED zinc finger Dimer_Tnp_hAT PF05699.14 86 ZBED1-203 - 694 2.9e-15 55.8 0.1 1 2 1 6.1e+03 -2.9 0.0 5 38 458 487 454 490 0.75 hAT family C-terminal dimerisation region Dimer_Tnp_hAT PF05699.14 86 ZBED1-203 - 694 2.9e-15 55.8 0.1 2 2 1.5e-18 9.2e-15 54.2 0.0 1 85 571 650 571 651 0.95 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-BED PF02892.15 44 ZBED4-201 - 1171 2.8e-64 212.9 27.8 1 4 2.4e-19 7.1e-16 58.0 0.4 1 44 118 166 118 166 0.99 BED zinc finger zf-BED PF02892.15 44 ZBED4-201 - 1171 2.8e-64 212.9 27.8 2 4 1.1e-18 3.2e-15 55.9 2.0 1 44 288 336 288 336 0.98 BED zinc finger zf-BED PF02892.15 44 ZBED4-201 - 1171 2.8e-64 212.9 27.8 3 4 2e-19 5.9e-16 58.2 1.0 1 44 459 506 459 506 0.99 BED zinc finger zf-BED PF02892.15 44 ZBED4-201 - 1171 2.8e-64 212.9 27.8 4 4 1.1e-18 3.2e-15 55.8 3.9 1 44 561 609 561 609 0.98 BED zinc finger Dimer_Tnp_hAT PF05699.14 86 ZBED4-201 - 1171 5e-08 32.6 0.0 1 1 6.7e-11 2e-07 30.7 0.0 5 85 1088 1163 1086 1164 0.94 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:31 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB25-201 - 435 1.1e-20 73.9 0.2 1 2 7.8e-23 9.3e-20 70.9 0.2 1 105 14 113 14 118 0.83 BTB/POZ domain BTB PF00651.31 111 ZBTB25-201 - 435 1.1e-20 73.9 0.2 2 2 0.79 9.5e+02 0.1 0.0 54 76 351 373 338 383 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB25-201 - 435 8e-08 32.3 21.7 1 3 2.8e-06 0.0034 17.8 6.9 3 23 240 260 238 260 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB25-201 - 435 8e-08 32.3 21.7 2 3 0.33 4e+02 1.8 0.3 5 14 338 347 336 350 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB25-201 - 435 8e-08 32.3 21.7 3 3 2.5e-07 0.0003 21.1 1.5 2 23 350 371 349 371 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB25-201 - 435 2.4e-06 27.9 15.1 1 3 8.6e-06 0.01 16.6 4.7 2 23 239 260 238 261 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB25-201 - 435 2.4e-06 27.9 15.1 2 3 9.4 1.1e+04 -2.2 0.0 6 15 339 348 338 350 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB25-201 - 435 2.4e-06 27.9 15.1 3 3 8.7e-06 0.01 16.6 1.2 3 23 351 371 349 372 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB25-202 - 86 2.1e-13 50.4 0.1 1 1 2.9e-17 2.6e-13 50.2 0.1 1 50 14 62 14 75 0.83 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB25-203 - 94 2.7e-16 59.8 0.3 1 1 1.1e-19 3.3e-16 59.5 0.3 1 75 14 85 14 91 0.91 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB25-204 - 435 1.1e-20 73.9 0.2 1 2 7.8e-23 9.3e-20 70.9 0.2 1 105 14 113 14 118 0.83 BTB/POZ domain BTB PF00651.31 111 ZBTB25-204 - 435 1.1e-20 73.9 0.2 2 2 0.79 9.5e+02 0.1 0.0 54 76 351 373 338 383 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB25-204 - 435 8e-08 32.3 21.7 1 3 2.8e-06 0.0034 17.8 6.9 3 23 240 260 238 260 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB25-204 - 435 8e-08 32.3 21.7 2 3 0.33 4e+02 1.8 0.3 5 14 338 347 336 350 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB25-204 - 435 8e-08 32.3 21.7 3 3 2.5e-07 0.0003 21.1 1.5 2 23 350 371 349 371 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB25-204 - 435 2.4e-06 27.9 15.1 1 3 8.6e-06 0.01 16.6 4.7 2 23 239 260 238 261 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB25-204 - 435 2.4e-06 27.9 15.1 2 3 9.4 1.1e+04 -2.2 0.0 6 15 339 348 338 350 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB25-204 - 435 2.4e-06 27.9 15.1 3 3 8.7e-06 0.01 16.6 1.2 3 23 351 371 349 372 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB34-201 - 504 7e-26 90.6 0.2 1 1 1.6e-28 1.2e-25 89.9 0.2 1 108 26 127 26 130 0.94 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB34-201 - 504 9.8e-17 60.4 16.9 1 3 3e-07 0.00021 21.5 0.4 3 23 378 398 376 398 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB34-201 - 504 9.8e-17 60.4 16.9 2 3 6.7e-08 4.8e-05 23.6 1.3 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB34-201 - 504 9.8e-17 60.4 16.9 3 3 5.8e-08 4.2e-05 23.8 2.1 1 23 432 455 432 455 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB34-201 - 504 4.8e-15 55.2 15.5 1 4 0.092 66 4.2 0.1 17 25 378 386 376 387 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-201 - 504 4.8e-15 55.2 15.5 2 4 3.2e-10 2.3e-07 30.9 0.6 1 26 390 415 390 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-201 - 504 4.8e-15 55.2 15.5 3 4 3.9e-08 2.8e-05 24.3 1.4 2 24 419 441 418 442 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-201 - 504 4.8e-15 55.2 15.5 4 4 0.16 1.1e+02 3.4 0.1 2 12 447 458 446 464 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB34-201 - 504 1.7e-11 43.9 18.9 1 3 5.7e-07 0.00041 21.0 0.3 2 23 377 398 376 399 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB34-201 - 504 1.7e-11 43.9 18.9 2 3 8.3e-06 0.0059 17.3 0.9 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB34-201 - 504 1.7e-11 43.9 18.9 3 3 1.7e-05 0.012 16.4 1.9 1 24 432 455 432 455 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB34-201 - 504 1.8e-08 34.5 7.2 1 3 0.034 24 5.5 0.1 6 21 381 396 377 396 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB34-201 - 504 1.8e-08 34.5 7.2 2 3 9e-05 0.065 13.7 0.5 1 23 404 426 404 427 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB34-201 - 504 1.8e-08 34.5 7.2 3 3 6.6e-06 0.0048 17.3 0.2 1 21 432 452 432 453 0.96 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZBTB34-201 - 504 1e-05 25.6 6.3 1 3 0.00041 0.29 11.4 0.0 2 22 376 396 375 396 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB34-201 - 504 1e-05 25.6 6.3 2 3 0.00051 0.37 11.2 0.3 2 24 404 426 403 426 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB34-201 - 504 1e-05 25.6 6.3 3 3 0.075 54 4.3 0.3 2 22 432 452 431 454 0.86 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB34-202 - 516 7.2e-26 90.6 0.2 1 1 1.7e-28 1.2e-25 89.9 0.2 1 108 38 139 38 142 0.94 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB34-202 - 516 1.1e-16 60.3 16.9 1 3 3e-07 0.00022 21.5 0.4 3 23 390 410 388 410 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB34-202 - 516 1.1e-16 60.3 16.9 2 3 6.9e-08 5e-05 23.5 1.3 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB34-202 - 516 1.1e-16 60.3 16.9 3 3 6e-08 4.3e-05 23.7 2.1 1 23 444 467 444 467 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB34-202 - 516 5.3e-15 55.1 15.5 1 4 0.095 68 4.1 0.1 17 25 390 398 388 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-202 - 516 5.3e-15 55.1 15.5 2 4 3.3e-10 2.4e-07 30.9 0.6 1 26 402 427 402 427 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-202 - 516 5.3e-15 55.1 15.5 3 4 4e-08 2.9e-05 24.3 1.4 2 24 431 453 430 454 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB34-202 - 516 5.3e-15 55.1 15.5 4 4 0.16 1.2e+02 3.4 0.1 2 12 459 470 458 476 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB34-202 - 516 1.9e-11 43.8 18.9 1 3 5.8e-07 0.00042 20.9 0.3 2 23 389 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB34-202 - 516 1.9e-11 43.8 18.9 2 3 8.5e-06 0.0061 17.3 0.9 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB34-202 - 516 1.9e-11 43.8 18.9 3 3 1.8e-05 0.013 16.3 1.9 1 24 444 467 444 467 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB34-202 - 516 2e-08 34.3 7.2 1 3 0.035 25 5.4 0.1 6 21 393 408 389 408 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB34-202 - 516 2e-08 34.3 7.2 2 3 9.3e-05 0.067 13.6 0.5 1 23 416 438 416 439 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB34-202 - 516 2e-08 34.3 7.2 3 3 6.8e-06 0.0049 17.2 0.2 1 21 444 464 444 465 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_CCCH_4 PF18345.1 19 ZC3H8-201 - 291 2.5e-14 52.8 26.5 1 3 3.4e-09 1e-05 25.4 3.0 1 19 197 215 197 215 0.99 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-201 - 291 2.5e-14 52.8 26.5 2 3 2.3e-11 7e-08 32.3 2.9 1 19 226 244 226 244 1.00 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-201 - 291 2.5e-14 52.8 26.5 3 3 0.0059 18 5.6 5.1 1 19 249 268 249 268 0.92 Zinc finger domain zf-CCCH PF00642.24 27 ZC3H8-201 - 291 9e-12 44.6 24.5 1 3 8.1e-09 2.4e-05 24.1 1.5 2 26 193 216 192 217 0.92 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-201 - 291 9e-12 44.6 24.5 2 3 2.2e-08 6.6e-05 22.7 1.8 2 26 222 245 221 246 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-201 - 291 9e-12 44.6 24.5 3 3 0.00043 1.3 9.0 6.3 5 26 248 269 248 270 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 22 ZC3H8-201 - 291 1.7e-11 43.6 24.0 1 3 4.4e-06 0.013 15.3 1.1 2 22 196 216 195 216 0.96 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-201 - 291 1.7e-11 43.6 24.0 2 3 1.8e-09 5.3e-06 26.1 1.9 2 22 225 245 224 245 0.96 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-201 - 291 1.7e-11 43.6 24.0 3 3 1.9e-05 0.058 13.2 6.5 2 21 248 268 247 269 0.97 CCCH-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-201 - 291 8.3e-07 29.3 22.5 1 3 1.1e-06 0.0032 17.9 2.2 1 17 196 215 196 215 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-201 - 291 8.3e-07 29.3 22.5 2 3 0.00012 0.35 11.4 1.1 2 17 226 244 226 244 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-201 - 291 8.3e-07 29.3 22.5 3 3 0.00024 0.73 10.4 4.5 1 17 248 268 248 269 0.95 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_CCCH_4 PF18345.1 19 ZC3H8-202 - 291 2.5e-14 52.8 26.5 1 3 3.4e-09 1e-05 25.4 3.0 1 19 197 215 197 215 0.99 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-202 - 291 2.5e-14 52.8 26.5 2 3 2.3e-11 7e-08 32.3 2.9 1 19 226 244 226 244 1.00 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-202 - 291 2.5e-14 52.8 26.5 3 3 0.0059 18 5.6 5.1 1 19 249 268 249 268 0.92 Zinc finger domain zf-CCCH PF00642.24 27 ZC3H8-202 - 291 3.1e-11 42.9 26.1 1 3 8.1e-09 2.4e-05 24.1 1.5 2 26 193 216 192 217 0.92 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-202 - 291 3.1e-11 42.9 26.1 2 3 6e-08 0.00018 21.3 3.1 2 26 222 245 221 246 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-202 - 291 3.1e-11 42.9 26.1 3 3 0.00043 1.3 9.0 6.3 5 26 248 269 248 270 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 22 ZC3H8-202 - 291 1.2e-10 40.9 25.6 1 3 4.4e-06 0.013 15.3 1.1 2 22 196 216 195 216 0.96 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-202 - 291 1.2e-10 40.9 25.6 2 3 1e-08 3.1e-05 23.7 3.1 2 21 225 244 224 245 0.97 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-202 - 291 1.2e-10 40.9 25.6 3 3 1.9e-05 0.058 13.2 6.5 2 21 248 268 247 269 0.97 CCCH-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-202 - 291 8.4e-07 29.2 22.5 1 3 1.1e-06 0.0032 17.9 2.2 1 17 196 215 196 215 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-202 - 291 8.4e-07 29.2 22.5 2 3 0.00012 0.35 11.4 1.1 2 17 226 244 226 244 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-202 - 291 8.4e-07 29.2 22.5 3 3 0.00024 0.73 10.4 4.5 1 17 248 268 248 269 0.95 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_CCCH_4 PF18345.1 19 ZC3H8-208 - 289 2.7e-14 52.7 26.5 1 3 3.4e-09 1e-05 25.4 3.0 1 19 197 215 197 215 0.99 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-208 - 289 2.7e-14 52.7 26.5 2 3 2.3e-11 6.9e-08 32.3 2.9 1 19 226 244 226 244 1.00 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZC3H8-208 - 289 2.7e-14 52.7 26.5 3 3 0.0059 17 5.6 5.1 1 19 249 268 249 268 0.92 Zinc finger domain zf-CCCH PF00642.24 27 ZC3H8-208 - 289 9.2e-12 44.6 24.5 1 3 8.1e-09 2.4e-05 24.1 1.5 2 26 193 216 192 217 0.92 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-208 - 289 9.2e-12 44.6 24.5 2 3 2.2e-08 6.6e-05 22.7 1.8 2 26 222 245 221 246 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH PF00642.24 27 ZC3H8-208 - 289 9.2e-12 44.6 24.5 3 3 0.00043 1.3 9.1 6.3 5 26 248 269 248 270 0.90 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 22 ZC3H8-208 - 289 1.8e-11 43.6 24.0 1 3 4.4e-06 0.013 15.3 1.1 2 22 196 216 195 216 0.96 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-208 - 289 1.8e-11 43.6 24.0 2 3 1.8e-09 5.3e-06 26.1 1.9 2 22 225 245 224 245 0.96 CCCH-type zinc finger zf-CCCH_4 PF18044.1 22 ZC3H8-208 - 289 1.8e-11 43.6 24.0 3 3 1.9e-05 0.057 13.2 6.5 2 21 248 268 247 269 0.97 CCCH-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-208 - 289 8.6e-07 29.2 22.5 1 3 1.1e-06 0.0031 17.9 2.2 1 17 196 215 196 215 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-208 - 289 8.6e-07 29.2 22.5 2 3 0.00012 0.35 11.4 1.1 2 17 226 244 226 244 0.98 RNA-binding, Nab2-type zinc finger zf-CCCH_2 PF14608.6 18 ZC3H8-208 - 289 8.6e-07 29.2 22.5 3 3 0.00024 0.72 10.4 4.5 1 17 248 268 248 269 0.95 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 1 20 0.02 45 4.7 1.3 12 26 113 127 109 127 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 2 20 0.00023 0.51 10.9 0.5 11 25 267 281 262 282 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 3 20 3.8e-11 8.6e-08 32.3 0.2 1 24 285 308 285 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 4 20 2.2e-07 0.0005 20.4 1.7 1 23 313 334 313 337 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 5 20 0.096 2.2e+02 2.6 5.8 1 25 340 364 340 365 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 6 20 0.024 53 4.5 0.6 1 26 368 415 368 415 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 7 20 0.0025 5.6 7.6 0.1 4 21 421 438 418 443 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 8 20 5.2e-05 0.12 12.9 0.5 1 26 446 469 446 469 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 9 20 2 4.4e+03 -1.6 0.2 2 10 473 481 472 483 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 10 20 0.037 82 3.9 0.1 15 25 742 752 735 753 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 11 20 8.1e-05 0.18 12.3 4.6 2 24 757 779 756 781 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 12 20 0.085 1.9e+02 2.7 0.2 2 23 785 808 785 809 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 13 20 7.2e-07 0.0016 18.8 0.4 2 25 815 840 814 841 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 14 20 0.015 33 5.1 0.0 15 24 880 889 846 889 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 15 20 2.3e-08 5.2e-05 23.5 0.1 1 24 895 918 895 920 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 16 20 2.9e-06 0.0065 16.8 2.7 1 26 923 948 923 948 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 17 20 4.7e-05 0.11 13.0 0.2 2 25 952 976 951 977 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 18 20 0.0038 8.5 7.0 5.2 2 23 981 1002 980 1004 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 19 20 0.0017 3.9 8.1 0.0 1 25 1008 1051 1008 1052 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-201 - 1243 1.1e-39 133.1 129.1 20 20 0.75 1.7e+03 -0.3 0.1 2 11 1056 1065 1055 1070 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 1 19 0.042 95 3.7 2.0 1 23 12 35 12 35 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 2 19 0.01 23 5.7 4.6 2 21 117 136 116 137 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 3 19 3.1e-08 7e-05 23.1 3.3 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 4 19 1.6e-05 0.035 14.6 0.2 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 5 19 0.00073 1.6 9.3 2.9 1 23 326 349 326 349 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 6 19 0.00014 0.31 11.6 2.5 3 23 356 377 355 377 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 7 19 0.00022 0.48 11.0 1.7 1 23 404 426 404 426 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 8 19 0.0099 22 5.7 0.2 1 23 432 454 432 454 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 9 19 2.9e-05 0.065 13.7 0.4 1 23 458 481 458 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 10 19 0.002 4.4 8.0 0.9 2 23 743 764 742 764 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 11 19 0.011 24 5.6 6.0 1 23 770 793 770 793 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 12 19 8.7e-06 0.019 15.4 0.2 2 23 799 822 798 822 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 13 19 1.2e-05 0.026 15.0 0.5 1 23 830 853 830 853 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 14 19 0.015 33 5.2 0.1 2 20 881 900 880 902 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 15 19 3.4e-07 0.00077 19.8 1.5 1 23 909 931 909 931 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 16 19 6.9e-06 0.015 15.7 3.0 3 23 939 959 937 959 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 17 19 4.2e-05 0.095 13.2 0.3 1 23 966 988 966 988 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 18 19 0.0043 9.7 6.9 8.4 1 23 994 1017 994 1017 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-201 - 1243 1.2e-36 123.1 159.2 19 19 5.8e-05 0.13 12.8 0.6 2 23 1042 1064 1041 1064 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 1 19 0.05 1.1e+02 4.0 2.5 1 24 12 35 12 35 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 2 19 0.00046 1 10.4 2.3 2 20 117 135 116 135 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 3 19 2.4e-06 0.0054 17.5 2.9 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 4 19 0.00031 0.69 10.9 0.3 1 23 299 321 299 322 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 5 19 0.00017 0.38 11.7 3.3 1 24 326 349 326 349 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 6 19 0.00023 0.51 11.3 1.7 3 24 356 377 355 377 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 7 19 0.0016 3.6 8.7 0.6 3 23 406 426 404 427 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 8 19 0.0061 14 6.9 0.3 1 23 432 454 432 455 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 9 19 2.8e-05 0.062 14.2 0.5 1 24 458 481 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 10 19 0.00035 0.79 10.7 1.2 2 23 743 764 742 765 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 11 19 0.005 11 7.1 5.5 1 24 770 793 770 793 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 12 19 0.013 28 5.9 0.1 2 23 799 822 798 823 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 13 19 1.7e-05 0.038 14.8 0.4 1 24 830 853 830 853 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 14 19 0.00048 1.1 10.3 0.2 2 23 881 903 880 904 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 15 19 5.7e-05 0.13 13.2 1.2 1 23 909 931 909 932 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 16 19 2.4e-05 0.053 14.4 2.2 2 23 938 959 937 960 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 17 19 5.3e-05 0.12 13.3 0.3 1 23 966 988 966 989 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 18 19 0.17 3.8e+02 2.4 7.1 1 24 994 1017 994 1017 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-201 - 1243 1.9e-32 109.1 153.7 19 19 2.7e-05 0.061 14.2 0.9 2 24 1042 1064 1041 1064 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 1 16 0.026 58 3.6 1.5 3 26 273 295 271 295 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 2 16 1.6e-12 3.5e-09 36.3 0.2 1 26 299 323 299 323 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 3 16 7.2e-07 0.0016 18.1 2.2 3 26 328 351 326 351 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 4 16 0.27 6e+02 0.3 0.0 14 25 367 378 364 379 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 5 16 0.18 4.1e+02 0.9 0.2 17 24 420 426 414 427 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 6 16 0.16 3.6e+02 1.0 0.1 15 24 446 454 434 455 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 7 16 1.6 3.5e+03 -2.1 0.4 16 24 473 481 472 482 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 8 16 4.7 1.1e+04 -3.7 1.3 19 25 760 765 759 765 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 9 16 6.9e-07 0.0015 18.2 7.6 1 25 770 794 770 795 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 10 16 8.5e-06 0.019 14.7 0.4 6 25 805 823 799 824 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 11 16 0.0012 2.8 7.8 1.3 2 25 881 904 881 905 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 12 16 1.5e-07 0.00033 20.3 2.8 1 25 909 932 909 933 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 13 16 4.9 1.1e+04 -3.7 1.0 11 25 947 960 947 960 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 14 16 4.1e-10 9.2e-07 28.5 0.2 1 24 966 988 966 989 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 15 16 0.00044 0.99 9.2 6.5 1 24 994 1017 994 1019 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-201 - 1243 2.2e-30 104.0 115.7 16 16 2e-05 0.045 13.5 0.1 2 24 1042 1064 1041 1065 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 1 12 0.0013 2.9 8.3 0.4 3 29 12 39 10 42 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 2 12 3.2e-06 0.0072 16.6 3.2 3 51 271 320 269 323 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 3 12 0.1 2.3e+02 2.2 3.8 2 28 325 352 324 356 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 4 12 1.8e-05 0.039 14.2 0.3 4 32 355 384 352 386 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 5 12 1.3 2.9e+03 -1.3 0.1 34 49 406 423 399 426 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 6 12 0.0026 5.8 7.3 2.0 3 53 432 481 431 485 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 7 12 0.42 9.3e+02 0.2 7.8 4 53 743 793 741 794 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 8 12 1.4e-06 0.0032 17.7 1.0 13 53 811 853 797 861 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 9 12 6.5e-07 0.0015 18.8 0.7 3 50 880 929 878 933 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 10 12 0.00011 0.25 11.7 2.9 4 50 938 986 935 991 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 11 12 0.2 4.5e+02 1.2 2.1 3 29 994 1021 992 1025 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-201 - 1243 2e-15 56.8 91.4 12 12 0.0024 5.3 7.4 0.0 4 26 1042 1065 1039 1069 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 1 20 0.021 41 4.8 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 2 20 0.00024 0.48 11.0 0.5 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 3 20 4e-11 7.9e-08 32.4 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 4 20 2.3e-07 0.00046 20.5 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 5 20 0.1 2e+02 2.7 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 6 20 0.022 44 4.7 0.5 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 7 20 0.0026 5.2 7.7 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 8 20 5.4e-05 0.11 13.0 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 9 20 2.1 4.1e+03 -1.5 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 10 20 0.038 76 4.0 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 11 20 8.4e-05 0.17 12.4 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 12 20 0.088 1.8e+02 2.8 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 13 20 7.5e-07 0.0015 18.9 0.4 2 25 803 828 802 829 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 14 20 0.015 31 5.2 0.0 15 24 868 877 834 877 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 15 20 2.4e-08 4.8e-05 23.6 0.1 1 24 883 906 883 908 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 16 20 3e-06 0.006 17.0 2.7 1 26 911 936 911 936 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 17 20 4.9e-05 0.097 13.1 0.2 2 25 940 964 939 965 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 18 20 0.0039 7.8 7.1 5.2 2 23 969 990 968 992 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 19 20 0.0018 3.5 8.2 0.0 1 25 996 1039 996 1040 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-202 - 1156 1.6e-40 135.8 128.6 20 20 0.79 1.6e+03 -0.2 0.1 2 11 1044 1053 1043 1058 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 1 19 0.13 2.5e+02 2.4 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 2 19 0.011 21 5.8 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 3 19 3.2e-08 6.4e-05 23.2 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 4 19 1.6e-05 0.032 14.7 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 5 19 0.00076 1.5 9.4 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 6 19 0.00015 0.29 11.7 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 7 19 0.00022 0.45 11.1 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 8 19 0.01 20 5.9 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 9 19 3e-05 0.06 13.8 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 10 19 0.002 4.1 8.1 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 11 19 0.011 22 5.7 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 12 19 9e-06 0.018 15.5 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 13 19 1.2e-05 0.024 15.1 0.5 1 23 818 841 818 841 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 14 19 0.015 30 5.3 0.1 2 20 869 888 868 890 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 15 19 3.6e-07 0.00071 19.9 1.5 1 23 897 919 897 919 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 16 19 7.2e-06 0.014 15.8 3.0 3 23 927 947 925 947 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 17 19 4.4e-05 0.088 13.3 0.3 1 23 954 976 954 976 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 18 19 0.0045 9 7.0 8.4 1 23 982 1005 982 1005 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-202 - 1156 7e-37 123.8 159.0 19 19 6e-05 0.12 12.9 0.6 2 23 1030 1052 1029 1052 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 1 19 0.17 3.4e+02 2.5 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 2 19 0.00047 0.95 10.5 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 3 19 2.5e-06 0.0049 17.6 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 4 19 0.00032 0.63 11.0 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 5 19 0.00017 0.35 11.8 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 6 19 0.00024 0.47 11.4 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 7 19 0.0016 3.3 8.8 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 8 19 0.0063 13 7.0 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 9 19 2.9e-05 0.057 14.3 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 10 19 0.00036 0.73 10.8 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 11 19 0.0052 10 7.3 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 12 19 0.013 26 6.0 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 13 19 1.8e-05 0.035 14.9 0.4 1 24 818 841 818 841 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 14 19 0.0005 0.99 10.4 0.2 2 23 869 891 868 892 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 15 19 5.9e-05 0.12 13.3 1.2 1 23 897 919 897 920 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 16 19 2.4e-05 0.049 14.5 2.2 2 23 926 947 925 948 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 17 19 5.5e-05 0.11 13.4 0.3 1 23 954 976 954 977 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 18 19 0.18 3.5e+02 2.5 7.1 1 24 982 1005 982 1005 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-202 - 1156 1.3e-32 109.6 153.4 19 19 2.8e-05 0.056 14.3 0.9 2 24 1030 1052 1029 1052 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 1 16 0.027 54 3.7 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 2 16 1.6e-12 3.2e-09 36.4 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 3 16 7.4e-07 0.0015 18.3 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 4 16 0.28 5.6e+02 0.4 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 5 16 0.16 3.2e+02 1.2 0.1 17 24 408 414 402 416 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 6 16 0.17 3.3e+02 1.1 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 7 16 1.6 3.3e+03 -2.0 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 8 16 4.9 9.8e+03 -3.6 1.3 19 25 748 753 747 753 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 9 16 7.2e-07 0.0014 18.3 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 10 16 8.8e-06 0.017 14.8 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 11 16 0.0013 2.6 7.9 1.4 2 25 869 892 869 893 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 12 16 1.5e-07 0.0003 20.5 2.8 1 25 897 920 897 921 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 13 16 5.1 1e+04 -3.6 1.0 11 25 935 948 935 948 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 14 16 4.3e-10 8.5e-07 28.6 0.2 1 24 954 976 954 977 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 15 16 0.00046 0.91 9.3 6.5 1 24 982 1005 982 1007 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-202 - 1156 4.4e-31 106.3 115.1 16 16 2.1e-05 0.041 13.6 0.1 2 24 1030 1052 1029 1053 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 1 12 0.0077 15 5.9 0.6 5 29 2 27 1 30 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 2 12 3.3e-06 0.0066 16.7 3.2 3 51 259 308 257 311 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 3 12 0.11 2.1e+02 2.3 3.8 2 28 313 340 312 344 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 4 12 1.8e-05 0.036 14.4 0.3 4 32 343 372 340 374 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 5 12 1.3 2.7e+03 -1.2 0.1 34 49 394 411 387 414 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 6 12 0.0027 5.3 7.4 2.0 3 53 420 469 419 473 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 7 12 0.43 8.6e+02 0.3 7.8 4 53 731 781 729 782 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 8 12 1.5e-06 0.0029 17.9 1.0 13 53 799 841 785 849 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 9 12 6.7e-07 0.0013 18.9 0.7 3 50 868 917 866 921 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 10 12 0.00012 0.23 11.8 2.9 4 50 926 974 923 979 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 11 12 0.21 4.2e+02 1.3 2.1 3 29 982 1009 980 1013 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-202 - 1156 6.7e-15 55.1 92.2 12 12 0.0025 4.9 7.5 0.0 4 26 1030 1053 1027 1057 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZFAT-205 - 362 5.5e-14 51.6 16.1 1 3 1.5e-10 2.2e-07 30.5 0.2 1 24 85 107 85 108 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-205 - 362 5.5e-14 51.6 16.1 2 3 0.00016 0.24 11.2 6.5 1 24 113 136 113 138 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-205 - 362 5.5e-14 51.6 16.1 3 3 7.2e-06 0.011 15.5 0.1 2 24 161 183 160 184 0.96 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFAT-205 - 362 3.2e-07 30.5 21.4 1 3 1.5e-05 0.022 15.2 0.3 1 23 85 107 85 107 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-205 - 362 3.2e-07 30.5 21.4 2 3 0.0015 2.3 8.8 8.4 1 23 113 136 113 136 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-205 - 362 3.2e-07 30.5 21.4 3 3 2.1e-05 0.031 14.7 0.6 2 23 161 183 160 183 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-205 - 362 3e-06 27.6 20.6 1 3 1.8e-05 0.027 15.3 0.3 1 23 85 107 85 108 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-205 - 362 3e-06 27.6 20.6 2 3 0.059 88 4.4 7.1 1 24 113 136 113 136 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-205 - 362 3e-06 27.6 20.6 3 3 9.4e-06 0.014 16.2 0.9 2 24 161 183 160 183 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZFAT-206 - 87 1.1e-08 34.6 21.8 1 3 0.12 3.7e+02 1.0 1.1 19 25 2 7 1 8 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-206 - 87 1.1e-08 34.6 21.8 2 3 1.4e-08 4.3e-05 23.2 7.6 1 25 12 36 12 37 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-206 - 87 1.1e-08 34.6 21.8 3 3 1.7e-07 0.00051 19.7 0.3 6 25 47 65 40 66 0.94 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZFAT-206 - 87 2.8e-06 27.5 10.0 1 3 1.6e-06 0.0048 17.3 3.1 5 24 2 21 1 23 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-206 - 87 2.8e-06 27.5 10.0 2 3 0.0018 5.3 7.7 0.1 2 23 27 50 27 51 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-206 - 87 2.8e-06 27.5 10.0 3 3 0.0077 23 5.6 0.0 2 10 57 65 56 71 0.90 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 1 20 0.02 44 4.7 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 2 20 0.00023 0.51 10.9 0.5 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 3 20 3.8e-11 8.5e-08 32.3 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 4 20 2.2e-07 0.0005 20.4 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 5 20 0.095 2.1e+02 2.6 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 6 20 0.023 53 4.5 0.6 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 7 20 0.0025 5.5 7.6 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 8 20 5.2e-05 0.12 12.9 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 9 20 2 4.4e+03 -1.6 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 10 20 0.036 81 3.9 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 11 20 8.1e-05 0.18 12.3 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 12 20 0.084 1.9e+02 2.7 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 13 20 7.1e-07 0.0016 18.8 0.4 2 25 803 828 802 829 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 14 20 0.015 33 5.1 0.0 15 24 868 877 834 877 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 15 20 2.3e-08 5.1e-05 23.5 0.1 1 24 883 906 883 908 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 16 20 2.9e-06 0.0065 16.9 2.7 1 26 911 936 911 936 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 17 20 4.7e-05 0.1 13.0 0.2 2 25 940 964 939 965 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 18 20 0.0037 8.4 7.0 5.2 2 23 969 990 968 992 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 19 20 0.0017 3.8 8.1 0.0 1 25 996 1039 996 1040 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-207 - 1231 8.8e-40 133.4 129.1 20 20 0.75 1.7e+03 -0.3 0.1 2 11 1044 1053 1043 1058 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 1 19 0.12 2.7e+02 2.3 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 2 19 0.01 23 5.7 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 3 19 3.1e-08 6.9e-05 23.1 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 4 19 1.5e-05 0.035 14.6 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 5 19 0.00073 1.6 9.3 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 6 19 0.00014 0.31 11.6 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 7 19 0.00021 0.48 11.0 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 8 19 0.0098 22 5.8 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 9 19 2.9e-05 0.064 13.7 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 10 19 0.0019 4.3 8.0 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 11 19 0.011 24 5.6 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 12 19 8.6e-06 0.019 15.4 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 13 19 1.1e-05 0.026 15.0 0.5 1 23 818 841 818 841 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 14 19 0.015 33 5.2 0.1 2 20 869 888 868 890 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 15 19 3.4e-07 0.00076 19.8 1.5 1 23 897 919 897 919 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 16 19 6.8e-06 0.015 15.7 3.0 3 23 927 947 925 947 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 17 19 4.2e-05 0.094 13.2 0.3 1 23 954 976 954 976 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 18 19 0.0043 9.6 6.9 8.4 1 23 982 1005 982 1005 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-207 - 1231 2.6e-36 122.0 159.0 19 19 5.7e-05 0.13 12.8 0.6 2 23 1030 1052 1029 1052 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 1 19 0.16 3.6e+02 2.5 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 2 19 0.00045 1 10.4 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 3 19 2.4e-06 0.0053 17.5 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 4 19 0.0003 0.68 10.9 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 5 19 0.00017 0.37 11.7 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 6 19 0.00022 0.5 11.3 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 7 19 0.0016 3.5 8.7 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 8 19 0.0061 14 6.9 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 9 19 2.7e-05 0.061 14.2 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 10 19 0.00035 0.78 10.7 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 11 19 0.0049 11 7.2 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 12 19 0.012 28 5.9 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 13 19 1.7e-05 0.038 14.8 0.4 1 24 818 841 818 841 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 14 19 0.00047 1.1 10.3 0.2 2 23 869 891 868 892 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 15 19 5.7e-05 0.13 13.2 1.2 1 23 897 919 897 920 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 16 19 2.3e-05 0.052 14.4 2.2 2 23 926 947 925 948 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 17 19 5.2e-05 0.12 13.3 0.3 1 23 954 976 954 977 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 18 19 0.17 3.8e+02 2.4 7.1 1 24 982 1005 982 1005 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-207 - 1231 4.8e-32 107.9 153.4 19 19 2.7e-05 0.06 14.2 0.9 2 24 1030 1052 1029 1052 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 1 16 0.026 57 3.6 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 2 16 1.5e-12 3.4e-09 36.3 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 3 16 7.1e-07 0.0016 18.2 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 4 16 0.27 6e+02 0.3 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 5 16 0.18 4e+02 0.9 0.2 17 24 408 414 402 415 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 6 16 0.16 3.5e+02 1.1 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 7 16 1.6 3.5e+03 -2.1 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 8 16 4.7 1.1e+04 -3.7 1.3 19 25 748 753 747 753 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 9 16 6.8e-07 0.0015 18.2 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 10 16 8.4e-06 0.019 14.7 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 11 16 0.0012 2.7 7.8 1.3 2 25 869 892 869 893 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 12 16 1.5e-07 0.00033 20.4 2.8 1 25 897 920 897 921 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 13 16 4.8 1.1e+04 -3.7 1.0 11 25 935 948 935 948 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 14 16 4.1e-10 9.1e-07 28.5 0.2 1 24 954 976 954 977 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 15 16 0.00044 0.98 9.2 6.5 1 24 982 1005 982 1007 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-207 - 1231 1.9e-30 104.2 115.7 16 16 2e-05 0.044 13.5 0.1 2 24 1030 1052 1029 1053 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 1 12 0.0073 16 5.9 0.6 5 29 2 27 1 30 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 2 12 3.2e-06 0.0071 16.6 3.2 3 51 259 308 257 311 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 3 12 0.1 2.3e+02 2.2 3.8 2 28 313 340 312 344 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 4 12 1.7e-05 0.039 14.3 0.3 4 32 343 372 340 374 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 5 12 1.3 2.8e+03 -1.3 0.1 34 49 394 411 387 414 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 6 12 0.0026 5.7 7.3 2.0 3 53 420 469 419 473 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 7 12 0.41 9.2e+02 0.2 7.8 4 53 731 781 729 782 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 8 12 1.4e-06 0.0031 17.8 1.0 13 53 799 841 785 849 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 9 12 6.4e-07 0.0014 18.8 0.7 3 50 868 917 866 921 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 10 12 0.00011 0.25 11.7 2.9 4 50 926 974 923 979 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 11 12 0.2 4.5e+02 1.2 2.1 3 29 982 1009 980 1013 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-207 - 1231 1.5e-14 54.0 92.2 12 12 0.0023 5.2 7.4 0.0 4 26 1030 1053 1027 1057 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 1 20 0.021 41 4.8 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 2 20 0.00024 0.47 11.0 0.5 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 3 20 3.9e-11 7.8e-08 32.4 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 4 20 2.3e-07 0.00046 20.5 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 5 20 0.099 2e+02 2.7 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 6 20 0.022 44 4.8 0.4 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 7 20 0.0026 5.1 7.7 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 8 20 5.4e-05 0.11 13.0 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 9 20 2 4.1e+03 -1.5 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 10 20 0.038 75 4.0 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 11 20 8.4e-05 0.17 12.4 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 12 20 0.087 1.7e+02 2.9 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 13 20 7.4e-07 0.0015 18.9 0.4 2 25 803 828 802 829 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 14 20 0.015 30 5.3 0.0 15 24 868 877 834 877 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 15 20 2.4e-08 4.7e-05 23.6 0.1 1 24 883 906 883 908 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 16 20 3e-06 0.006 17.0 2.7 1 26 911 936 911 936 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 17 20 4.8e-05 0.096 13.2 0.2 2 25 940 964 939 965 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 18 20 0.0039 7.7 7.1 5.2 2 23 969 990 968 992 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 19 20 0.0018 3.5 8.2 0.0 1 25 996 1039 996 1040 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-208 - 1145 1.3e-40 136.1 128.6 20 20 0.78 1.5e+03 -0.1 0.1 2 11 1044 1053 1043 1058 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 1 19 0.12 2.5e+02 2.4 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 2 19 0.011 21 5.8 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 3 19 3.2e-08 6.4e-05 23.2 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 4 19 1.6e-05 0.032 14.7 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 5 19 0.00075 1.5 9.4 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 6 19 0.00014 0.29 11.7 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 7 19 0.00022 0.44 11.1 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 8 19 0.01 20 5.9 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 9 19 3e-05 0.059 13.8 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 10 19 0.002 4 8.1 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 11 19 0.011 22 5.7 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 12 19 8.9e-06 0.018 15.5 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 13 19 1.2e-05 0.024 15.1 0.5 1 23 818 841 818 841 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 14 19 0.015 30 5.3 0.1 2 20 869 888 868 890 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 15 19 3.5e-07 0.0007 19.9 1.5 1 23 897 919 897 919 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 16 19 7.1e-06 0.014 15.8 3.0 3 23 927 947 925 947 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 17 19 4.4e-05 0.087 13.3 0.3 1 23 954 976 954 976 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 18 19 0.0044 8.9 7.0 8.4 1 23 982 1005 982 1005 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-208 - 1145 5.7e-37 124.1 159.0 19 19 6e-05 0.12 12.9 0.6 2 23 1030 1052 1029 1052 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 1 19 0.17 3.3e+02 2.6 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 2 19 0.00047 0.94 10.5 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 3 19 2.4e-06 0.0049 17.6 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 4 19 0.00031 0.62 11.0 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 5 19 0.00017 0.34 11.8 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 6 19 0.00023 0.46 11.4 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 7 19 0.0016 3.2 8.8 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 8 19 0.0063 13 7.0 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 9 19 2.8e-05 0.057 14.3 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 10 19 0.00036 0.72 10.9 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 11 19 0.0051 10 7.3 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 12 19 0.013 26 6.0 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 13 19 1.7e-05 0.035 15.0 0.4 1 24 818 841 818 841 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 14 19 0.00049 0.98 10.4 0.2 2 23 869 891 868 892 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 15 19 5.9e-05 0.12 13.3 1.2 1 23 897 919 897 920 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 16 19 2.4e-05 0.048 14.5 2.2 2 23 926 947 925 948 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 17 19 5.4e-05 0.11 13.4 0.3 1 23 954 976 954 977 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 18 19 0.17 3.5e+02 2.5 7.1 1 24 982 1005 982 1005 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-208 - 1145 1e-32 109.9 153.4 19 19 2.8e-05 0.055 14.3 0.9 2 24 1030 1052 1029 1052 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 1 16 0.027 53 3.7 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 2 16 1.6e-12 3.2e-09 36.4 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 3 16 7.4e-07 0.0015 18.3 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 4 16 0.28 5.5e+02 0.4 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 5 16 0.16 3.2e+02 1.2 0.1 17 24 408 414 402 416 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 6 16 0.16 3.3e+02 1.2 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 7 16 1.6 3.2e+03 -2.0 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 8 16 4.9 9.7e+03 -3.5 1.3 19 25 748 753 747 753 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 9 16 7.1e-07 0.0014 18.3 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 10 16 8.7e-06 0.017 14.8 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 11 16 0.0013 2.5 7.9 1.3 2 25 869 892 869 893 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 12 16 1.5e-07 0.0003 20.5 2.8 1 25 897 920 897 921 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 13 16 5 1e+04 -3.6 1.0 11 25 935 948 935 948 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 14 16 4.2e-10 8.4e-07 28.6 0.2 1 24 954 976 954 977 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 15 16 0.00045 0.9 9.3 6.5 1 24 982 1005 982 1007 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-208 - 1145 3.6e-31 106.5 115.0 16 16 2.1e-05 0.041 13.6 0.1 2 24 1030 1052 1029 1053 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 1 12 0.0076 15 6.0 0.6 5 29 2 27 1 30 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 2 12 3.3e-06 0.0065 16.7 3.2 3 51 259 308 257 311 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 3 12 0.1 2.1e+02 2.3 3.8 2 28 313 340 312 344 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 4 12 1.8e-05 0.036 14.4 0.3 4 32 343 372 340 374 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 5 12 1.3 2.6e+03 -1.2 0.1 34 49 394 411 387 414 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 6 12 0.0026 5.3 7.4 2.0 3 53 420 469 419 473 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 7 12 0.43 8.5e+02 0.4 7.8 4 53 731 781 729 782 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 8 12 1.4e-06 0.0029 17.9 1.0 13 53 799 841 785 849 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 9 12 6.7e-07 0.0013 19.0 0.7 3 50 868 917 866 921 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 10 12 0.00011 0.23 11.8 2.9 4 50 926 974 923 979 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 11 12 0.21 4.1e+02 1.4 2.1 3 29 982 1009 980 1013 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-208 - 1145 5.7e-15 55.3 92.2 12 12 0.0024 4.8 7.5 0.0 4 26 1030 1053 1027 1057 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 1 20 0.02 44 4.7 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 2 20 0.00023 0.51 10.9 0.5 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 3 20 3.8e-11 8.5e-08 32.3 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 4 20 2.2e-07 0.0005 20.4 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 5 20 0.095 2.1e+02 2.6 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 6 20 0.023 53 4.5 0.6 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 7 20 0.0025 5.5 7.6 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 8 20 5.2e-05 0.12 12.9 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 9 20 2 4.4e+03 -1.6 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 10 20 0.036 81 3.9 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 11 20 8.1e-05 0.18 12.3 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 12 20 0.084 1.9e+02 2.7 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 13 20 7.1e-07 0.0016 18.8 0.4 2 25 803 828 802 829 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 14 20 0.015 33 5.1 0.0 15 24 868 877 834 877 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 15 20 2.3e-08 5.1e-05 23.5 0.1 1 24 883 906 883 908 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 16 20 2.9e-06 0.0065 16.9 2.7 1 26 911 936 911 936 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 17 20 4.7e-05 0.1 13.0 0.2 2 25 940 964 939 965 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 18 20 0.0037 8.4 7.0 5.2 2 23 969 990 968 992 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 19 20 0.0017 3.8 8.1 0.0 1 25 996 1039 996 1040 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-209 - 1231 8.8e-40 133.4 129.1 20 20 0.75 1.7e+03 -0.3 0.1 2 11 1044 1053 1043 1058 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 1 19 0.12 2.7e+02 2.3 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 2 19 0.01 23 5.7 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 3 19 3.1e-08 6.9e-05 23.1 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 4 19 1.5e-05 0.035 14.6 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 5 19 0.00073 1.6 9.3 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 6 19 0.00014 0.31 11.6 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 7 19 0.00021 0.48 11.0 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 8 19 0.0098 22 5.8 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 9 19 2.9e-05 0.064 13.7 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 10 19 0.0019 4.3 8.0 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 11 19 0.011 24 5.6 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 12 19 8.6e-06 0.019 15.4 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 13 19 1.1e-05 0.026 15.0 0.5 1 23 818 841 818 841 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 14 19 0.015 33 5.2 0.1 2 20 869 888 868 890 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 15 19 3.4e-07 0.00076 19.8 1.5 1 23 897 919 897 919 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 16 19 6.8e-06 0.015 15.7 3.0 3 23 927 947 925 947 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 17 19 4.2e-05 0.094 13.2 0.3 1 23 954 976 954 976 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 18 19 0.0043 9.6 6.9 8.4 1 23 982 1005 982 1005 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-209 - 1231 2.6e-36 122.0 159.0 19 19 5.7e-05 0.13 12.8 0.6 2 23 1030 1052 1029 1052 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 1 19 0.16 3.6e+02 2.5 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 2 19 0.00045 1 10.4 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 3 19 2.4e-06 0.0053 17.5 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 4 19 0.0003 0.68 10.9 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 5 19 0.00017 0.37 11.7 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 6 19 0.00022 0.5 11.3 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 7 19 0.0016 3.5 8.7 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 8 19 0.0061 14 6.9 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 9 19 2.7e-05 0.061 14.2 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 10 19 0.00035 0.78 10.7 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 11 19 0.0049 11 7.2 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 12 19 0.012 28 5.9 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 13 19 1.7e-05 0.038 14.8 0.4 1 24 818 841 818 841 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 14 19 0.00047 1.1 10.3 0.2 2 23 869 891 868 892 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 15 19 5.7e-05 0.13 13.2 1.2 1 23 897 919 897 920 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 16 19 2.3e-05 0.052 14.4 2.2 2 23 926 947 925 948 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 17 19 5.2e-05 0.12 13.3 0.3 1 23 954 976 954 977 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 18 19 0.17 3.8e+02 2.4 7.1 1 24 982 1005 982 1005 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-209 - 1231 4.8e-32 107.9 153.4 19 19 2.7e-05 0.06 14.2 0.9 2 24 1030 1052 1029 1052 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 1 16 0.026 57 3.6 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 2 16 1.5e-12 3.4e-09 36.3 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 3 16 7.1e-07 0.0016 18.2 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 4 16 0.27 6e+02 0.3 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 5 16 0.18 4e+02 0.9 0.2 17 24 408 414 402 415 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 6 16 0.16 3.5e+02 1.1 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 7 16 1.6 3.5e+03 -2.1 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 8 16 4.7 1.1e+04 -3.7 1.3 19 25 748 753 747 753 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 9 16 6.8e-07 0.0015 18.2 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 10 16 8.4e-06 0.019 14.7 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 11 16 0.0012 2.7 7.8 1.3 2 25 869 892 869 893 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 12 16 1.5e-07 0.00033 20.4 2.8 1 25 897 920 897 921 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 13 16 4.8 1.1e+04 -3.7 1.0 11 25 935 948 935 948 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 14 16 4.1e-10 9.1e-07 28.5 0.2 1 24 954 976 954 977 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 15 16 0.00044 0.98 9.2 6.5 1 24 982 1005 982 1007 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-209 - 1231 1.9e-30 104.2 115.7 16 16 2e-05 0.044 13.5 0.1 2 24 1030 1052 1029 1053 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 1 12 0.0073 16 5.9 0.6 5 29 2 27 1 30 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 2 12 3.2e-06 0.0071 16.6 3.2 3 51 259 308 257 311 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 3 12 0.1 2.3e+02 2.2 3.8 2 28 313 340 312 344 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 4 12 1.7e-05 0.039 14.3 0.3 4 32 343 372 340 374 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 5 12 1.3 2.8e+03 -1.3 0.1 34 49 394 411 387 414 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 6 12 0.0026 5.7 7.3 2.0 3 53 420 469 419 473 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 7 12 0.41 9.2e+02 0.2 7.8 4 53 731 781 729 782 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 8 12 1.4e-06 0.0031 17.8 1.0 13 53 799 841 785 849 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 9 12 6.4e-07 0.0014 18.8 0.7 3 50 868 917 866 921 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 10 12 0.00011 0.25 11.7 2.9 4 50 926 974 923 979 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 11 12 0.2 4.5e+02 1.2 2.1 3 29 982 1009 980 1013 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-209 - 1231 1.5e-14 54.0 92.2 12 12 0.0023 5.2 7.4 0.0 4 26 1030 1053 1027 1057 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 1 12 0.099 1.8e+02 2.9 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 2 12 0.0084 15 6.3 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 3 12 2.5e-08 4.5e-05 23.7 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 4 12 1.3e-05 0.023 15.2 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 5 12 0.00059 1.1 9.9 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 6 12 0.00011 0.2 12.2 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 7 12 0.00017 0.31 11.6 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 8 12 0.008 14 6.3 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 9 12 2.3e-05 0.042 14.3 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 10 12 0.0016 2.8 8.5 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 11 12 0.0088 16 6.2 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-213 - 846 1.2e-21 75.8 98.7 12 12 7e-06 0.013 16.0 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 1 13 0.016 29 5.3 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 2 13 0.00019 0.34 11.4 0.6 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 3 13 3.1e-11 5.6e-08 32.9 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 4 13 1.8e-07 0.00033 21.0 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 5 13 0.078 1.4e+02 3.2 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 6 13 0.03 54 4.5 1.2 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 7 13 0.002 3.6 8.2 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 8 13 4.2e-05 0.076 13.5 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 9 13 1.6 2.9e+03 -1.0 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 10 13 0.03 54 4.5 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 11 13 6.6e-05 0.12 12.9 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 12 13 0.069 1.2e+02 3.3 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-213 - 846 2.5e-21 75.1 85.1 13 13 0.1 1.8e+02 2.8 0.0 2 11 803 815 802 827 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 1 12 0.13 2.4e+02 3.0 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 2 12 0.00037 0.66 11.0 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 3 12 1.9e-06 0.0035 18.1 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 4 12 0.00025 0.44 11.5 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 5 12 0.00014 0.24 12.3 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 6 12 0.00018 0.33 11.9 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 7 12 0.0013 2.3 9.3 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 8 12 0.0049 8.8 7.5 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 9 12 2.2e-05 0.04 14.8 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 10 12 0.00028 0.51 11.3 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 11 12 0.004 7.2 7.7 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-213 - 846 2.8e-19 68.1 94.8 12 12 0.01 18 6.5 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 1 11 5 9e+03 -3.4 0.2 14 20 117 123 115 123 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 2 11 0.021 38 4.2 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 3 11 1.3e-12 2.3e-09 36.9 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 4 11 5.8e-07 0.001 18.7 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 5 11 0.22 4e+02 0.9 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 6 11 0.13 2.3e+02 1.7 0.1 17 24 408 414 402 416 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 7 11 0.13 2.4e+02 1.6 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 8 11 1.3 2.3e+03 -1.6 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 9 11 1.6 2.9e+03 -1.9 0.6 19 25 748 753 746 754 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 10 11 5.6e-07 0.001 18.8 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-213 - 846 2.7e-16 59.0 66.9 11 11 6.9e-06 0.012 15.3 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 1 17 0.025 35 5.1 1.3 12 26 113 127 109 127 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 2 17 0.00029 0.4 11.2 0.5 11 25 267 281 262 282 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 3 17 4.9e-11 6.7e-08 32.6 0.2 1 24 285 308 285 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 4 17 2.8e-07 0.00039 20.7 1.7 1 23 313 334 313 337 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 5 17 0.12 1.7e+02 2.9 5.8 1 25 340 364 340 365 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 6 17 0.033 45 4.7 0.7 1 26 368 415 368 415 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 7 17 0.0032 4.4 7.9 0.1 4 21 421 438 418 443 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 8 17 6.6e-05 0.092 13.2 0.5 1 26 446 469 446 469 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 9 17 2.5 3.5e+03 -1.3 0.2 2 10 473 481 472 483 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 10 17 0.047 65 4.2 0.1 15 25 742 752 735 753 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 11 17 0.0001 0.14 12.6 4.6 2 24 757 779 756 781 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 12 17 0.11 1.5e+02 3.1 0.2 2 23 785 808 785 809 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 13 17 9.1e-07 0.0013 19.1 0.4 2 25 815 840 814 841 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 14 17 0.019 26 5.5 0.0 15 24 880 889 846 889 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 15 17 2.9e-08 4.1e-05 23.8 0.1 1 24 895 918 895 920 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 16 17 3.7e-06 0.0051 17.2 2.7 1 26 923 948 923 948 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-215 - 998 1.1e-39 133.1 109.8 17 17 6e-05 0.082 13.4 0.2 2 25 952 976 951 977 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 1 17 0.054 74 4.1 2.0 1 23 12 35 12 35 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 2 17 0.013 18 6.0 4.6 2 21 117 136 116 137 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 3 17 4e-08 5.5e-05 23.4 3.3 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 4 17 2e-05 0.027 14.9 0.2 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 5 17 0.00093 1.3 9.6 2.9 1 23 326 349 326 349 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 6 17 0.00018 0.25 11.9 2.5 3 23 356 377 355 377 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 7 17 0.00027 0.38 11.3 1.7 1 23 404 426 404 426 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 8 17 0.013 17 6.1 0.2 1 23 432 454 432 454 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 9 17 3.7e-05 0.051 14.1 0.4 1 23 458 481 458 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 10 17 0.0025 3.4 8.3 0.9 2 23 743 764 742 764 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 11 17 0.014 19 6.0 6.0 1 23 770 793 770 793 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 12 17 1.1e-05 0.015 15.7 0.2 2 23 799 822 798 822 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 13 17 1.5e-05 0.02 15.3 0.5 1 23 830 853 830 853 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 14 17 0.019 26 5.5 0.1 2 20 881 900 880 902 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 15 17 4.4e-07 0.0006 20.1 1.5 1 23 909 931 909 931 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 16 17 8.8e-06 0.012 16.0 3.0 3 23 939 959 937 959 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-215 - 998 6.6e-36 120.8 135.7 17 17 5.4e-05 0.074 13.5 0.3 1 23 966 988 966 988 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 1 17 0.063 87 4.4 2.5 1 24 12 35 12 35 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 2 17 0.00058 0.8 10.7 2.3 2 20 117 135 116 135 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 3 17 3e-06 0.0042 17.8 2.9 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 4 17 0.00039 0.53 11.3 0.3 1 23 299 321 299 322 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 5 17 0.00021 0.29 12.1 3.3 1 24 326 349 326 349 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 6 17 0.00029 0.4 11.7 1.7 3 24 356 377 355 377 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 7 17 0.002 2.8 9.0 0.6 3 23 406 426 404 427 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 8 17 0.0078 11 7.2 0.3 1 23 432 454 432 455 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 9 17 3.5e-05 0.048 14.5 0.5 1 24 458 481 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 10 17 0.00045 0.61 11.1 1.2 2 23 743 764 742 765 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 11 17 0.0063 8.7 7.5 5.5 1 24 770 793 770 793 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 12 17 0.016 22 6.2 0.1 2 23 799 822 798 823 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 13 17 2.2e-05 0.03 15.2 0.4 1 24 830 853 830 853 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 14 17 0.00061 0.84 10.7 0.2 2 23 881 903 880 904 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 15 17 7.2e-05 0.1 13.5 1.2 1 23 909 931 909 932 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 16 17 3e-05 0.041 14.7 2.2 2 23 938 959 937 960 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-215 - 998 9e-33 110.1 130.9 17 17 6.7e-05 0.092 13.6 0.3 1 23 966 988 966 989 0.94 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 1 15 8.7 1.2e+04 -3.8 0.1 14 20 129 135 128 135 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 2 15 0.033 46 3.9 1.5 3 26 273 295 271 295 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 3 15 2e-12 2.7e-09 36.6 0.2 1 26 299 323 299 323 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 4 15 9.1e-07 0.0013 18.5 2.2 3 26 328 351 326 351 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 5 15 0.35 4.8e+02 0.6 0.0 14 25 367 378 364 379 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 6 15 0.2 2.7e+02 1.4 0.1 17 24 420 426 414 428 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 7 15 0.2 2.8e+02 1.4 0.1 15 24 446 454 434 455 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 8 15 2 2.8e+03 -1.8 0.4 16 24 473 481 472 482 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 9 15 2.5 3.4e+03 -2.1 0.6 19 25 760 765 758 766 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 10 15 8.8e-07 0.0012 18.5 7.6 1 25 770 794 770 795 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 11 15 1.1e-05 0.015 15.1 0.4 6 25 805 823 799 824 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 12 15 0.0027 3.8 7.4 2.1 2 25 881 904 881 905 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 13 15 1.9e-07 0.00026 20.7 2.8 1 25 909 932 909 933 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 14 15 6.2 8.6e+03 -3.4 1.0 11 25 947 960 947 960 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-215 - 998 2.1e-26 91.3 100.4 15 15 5.3e-10 7.2e-07 28.8 0.2 1 24 966 988 966 989 0.98 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 1 10 0.0016 2.2 8.6 0.4 3 29 12 39 10 42 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 2 10 4e-06 0.0055 17.0 3.2 3 51 271 320 269 323 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 3 10 0.06 82 3.6 2.4 2 27 325 351 324 355 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 4 10 2.4e-05 0.033 14.5 0.4 4 32 355 384 353 385 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 5 10 1.4 2e+03 -0.8 0.0 34 49 406 423 399 427 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 6 10 0.0031 4.2 7.7 1.9 3 53 432 481 431 486 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 7 10 0.52 7.2e+02 0.6 7.8 4 53 743 793 741 794 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 8 10 1.8e-06 0.0024 18.1 1.0 13 53 811 853 797 861 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 9 10 8.2e-07 0.0011 19.2 0.7 3 50 880 929 878 933 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-215 - 998 4.1e-16 59.0 78.8 10 10 9.2e-05 0.13 12.6 2.7 4 50 938 986 935 994 0.74 Drought induced 19 protein (Di19), zinc-binding zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 1 13 0.74 1e+03 0.3 2.0 1 19 12 30 12 35 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 2 13 3 4.1e+03 -1.6 1.3 3 19 118 134 116 135 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 3 13 7.1e-05 0.099 13.1 2.3 1 23 271 293 271 295 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 4 13 2.3 3.2e+03 -1.2 1.4 2 20 327 345 326 346 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 5 13 0.011 15 6.2 0.7 2 21 355 374 355 374 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 6 13 0.00066 0.9 10.0 0.2 1 20 404 423 404 424 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 7 13 3.2 4.4e+03 -1.7 0.3 1 6 432 437 432 438 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 8 13 0.0033 4.6 7.8 0.1 1 20 458 477 458 478 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 9 13 0.039 54 4.4 0.5 2 21 743 762 742 765 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 10 13 0.015 20 5.7 0.1 1 11 830 840 830 850 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 11 13 0.00034 0.46 10.9 0.9 1 21 909 929 909 929 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 12 13 1.7e-05 0.023 15.1 0.4 3 19 939 955 937 956 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFAT-215 - 998 4.5e-06 26.9 80.0 13 13 0.019 26 5.4 0.1 1 20 966 985 966 986 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 1 20 0.021 42 4.8 1.3 12 26 113 127 109 127 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 2 20 0.00024 0.49 10.9 0.5 11 25 205 219 200 220 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 3 20 4.1e-11 8.1e-08 32.4 0.2 1 24 223 246 223 247 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 4 20 2.4e-07 0.00047 20.4 1.7 1 23 251 272 251 275 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 5 20 0.1 2e+02 2.6 5.8 1 25 278 302 278 303 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 6 20 0.023 45 4.7 0.5 1 26 306 353 306 353 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 7 20 0.0027 5.3 7.7 0.1 4 21 359 376 356 381 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 8 20 5.6e-05 0.11 13.0 0.5 1 26 384 407 384 407 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 9 20 2.1 4.2e+03 -1.5 0.2 2 10 411 419 410 421 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 10 20 0.039 78 4.0 0.1 15 25 680 690 673 691 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 11 20 8.6e-05 0.17 12.4 4.6 2 24 695 717 694 719 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 12 20 0.09 1.8e+02 2.8 0.2 2 23 723 746 723 747 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 13 20 7.6e-07 0.0015 18.8 0.4 2 25 753 778 752 779 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 14 20 0.016 31 5.2 0.0 15 24 818 827 784 827 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 15 20 2.5e-08 4.9e-05 23.6 0.1 1 24 833 856 833 858 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 16 20 3.1e-06 0.0062 16.9 2.7 1 26 861 886 861 886 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 17 20 5e-05 0.1 13.1 0.2 2 25 890 914 889 915 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 18 20 0.004 8 7.1 5.2 2 23 919 940 918 942 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 19 20 0.0018 3.6 8.2 0.0 1 25 946 989 946 990 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-216 - 1181 2.5e-40 135.1 128.6 20 20 0.8 1.6e+03 -0.2 0.1 2 11 994 1003 993 1008 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 1 19 0.045 90 3.8 2.0 1 23 12 35 12 35 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 2 19 0.011 22 5.8 4.6 2 21 117 136 116 137 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 3 19 3.3e-08 6.6e-05 23.1 3.3 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 4 19 1.7e-05 0.033 14.6 0.2 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 5 19 0.00078 1.6 9.4 2.9 1 23 264 287 264 287 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 6 19 0.00015 0.3 11.6 2.5 3 23 294 315 293 315 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 7 19 0.00023 0.46 11.1 1.7 1 23 342 364 342 364 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 8 19 0.011 21 5.8 0.2 1 23 370 392 370 392 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 9 19 3.1e-05 0.061 13.8 0.4 1 23 396 419 396 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 10 19 0.0021 4.1 8.0 0.9 2 23 681 702 680 702 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 11 19 0.012 23 5.7 6.0 1 23 708 731 708 731 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 12 19 9.2e-06 0.018 15.4 0.2 2 23 737 760 736 760 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 13 19 1.2e-05 0.024 15.1 0.5 1 23 768 791 768 791 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 14 19 0.016 31 5.3 0.1 2 20 819 838 818 840 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 15 19 3.7e-07 0.00073 19.9 1.5 1 23 847 869 847 869 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 16 19 7.3e-06 0.015 15.8 3.0 3 23 877 897 875 897 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 17 19 4.5e-05 0.09 13.3 0.3 1 23 904 926 904 926 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 18 19 0.0046 9.2 6.9 8.4 1 23 932 955 932 955 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-216 - 1181 4.2e-37 124.6 159.2 19 19 6.2e-05 0.12 12.8 0.6 2 23 980 1002 979 1002 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 1 19 0.053 1.1e+02 4.1 2.5 1 24 12 35 12 35 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 2 19 0.00049 0.97 10.5 2.3 2 20 117 135 116 135 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 3 19 2.5e-06 0.0051 17.6 2.9 1 23 209 231 209 232 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 4 19 0.00032 0.65 11.0 0.3 1 23 237 259 237 260 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 5 19 0.00018 0.36 11.8 3.3 1 24 264 287 264 287 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 6 19 0.00024 0.48 11.4 1.7 3 24 294 315 293 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 7 19 0.0017 3.4 8.8 0.6 3 23 344 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 8 19 0.0065 13 6.9 0.3 1 23 370 392 370 393 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 9 19 2.9e-05 0.059 14.2 0.5 1 24 396 419 396 419 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 10 19 0.00037 0.74 10.8 1.2 2 23 681 702 680 703 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 11 19 0.0053 11 7.2 5.5 1 24 708 731 708 731 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 12 19 0.013 27 6.0 0.1 2 23 737 760 736 761 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 13 19 1.8e-05 0.036 14.9 0.4 1 24 768 791 768 791 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 14 19 0.00051 1 10.4 0.2 2 23 819 841 818 842 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 15 19 6.1e-05 0.12 13.3 1.2 1 23 847 869 847 870 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 16 19 2.5e-05 0.05 14.5 2.2 2 23 876 897 875 898 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 17 19 5.6e-05 0.11 13.4 0.3 1 23 904 926 904 927 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 18 19 0.18 3.6e+02 2.5 7.1 1 24 932 955 932 955 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-216 - 1181 6.5e-33 110.6 153.7 19 19 2.9e-05 0.057 14.3 0.9 2 24 980 1002 979 1002 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 1 16 0.028 55 3.6 1.5 3 26 211 233 209 233 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 2 16 1.6e-12 3.3e-09 36.3 0.2 1 26 237 261 237 261 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 3 16 7.6e-07 0.0015 18.2 2.2 3 26 266 289 264 289 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 4 16 0.29 5.7e+02 0.4 0.0 14 25 305 316 302 317 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 5 16 0.19 3.9e+02 0.9 0.2 17 24 358 364 352 365 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 6 16 0.17 3.4e+02 1.1 0.1 15 24 384 392 372 393 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 7 16 1.7 3.4e+03 -2.1 0.4 16 24 411 419 410 420 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 8 16 5 1e+04 -3.6 1.3 19 25 698 703 697 703 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 9 16 7.3e-07 0.0015 18.3 7.6 1 25 708 732 708 733 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 10 16 9e-06 0.018 14.8 0.4 6 25 743 761 737 762 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 11 16 0.0013 2.6 7.9 1.3 2 25 819 842 819 843 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 12 16 1.6e-07 0.00031 20.4 2.8 1 25 847 870 847 871 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 13 16 5.2 1e+04 -3.6 1.0 11 25 885 898 885 898 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 14 16 4.4e-10 8.7e-07 28.6 0.2 1 24 904 926 904 927 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 15 16 0.00047 0.93 9.3 6.5 1 24 932 955 932 957 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-216 - 1181 9.7e-31 105.2 115.7 16 16 2.1e-05 0.042 13.6 0.1 2 24 980 1002 979 1003 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 1 12 0.0014 2.7 8.4 0.4 3 29 12 39 10 42 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 2 12 3.4e-06 0.0068 16.7 3.2 3 51 209 258 207 261 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 3 12 0.11 2.2e+02 2.3 3.8 2 28 263 290 262 294 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 4 12 1.9e-05 0.037 14.3 0.3 4 32 293 322 290 324 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 5 12 1.4 2.7e+03 -1.3 0.1 34 49 344 361 337 364 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 6 12 0.0027 5.5 7.4 2.0 3 53 370 419 369 423 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 7 12 0.44 8.8e+02 0.3 7.8 4 53 681 731 679 732 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 8 12 1.5e-06 0.003 17.8 1.0 13 53 749 791 735 799 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 9 12 6.9e-07 0.0014 18.9 0.7 3 50 818 867 816 871 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 10 12 0.00012 0.24 11.7 2.9 4 50 876 924 873 929 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 11 12 0.22 4.3e+02 1.3 2.1 3 29 932 959 930 963 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-216 - 1181 9.7e-16 57.8 91.4 12 12 0.0025 5 7.5 0.0 4 26 980 1003 977 1007 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 1 20 0.02 44 4.7 1.3 12 26 101 115 97 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 2 20 0.00023 0.51 10.9 0.5 11 25 255 269 250 270 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 3 20 3.8e-11 8.5e-08 32.3 0.2 1 24 273 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 4 20 2.2e-07 0.0005 20.4 1.7 1 23 301 322 301 325 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 5 20 0.095 2.1e+02 2.6 5.8 1 25 328 352 328 353 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 6 20 0.023 53 4.5 0.6 1 26 356 403 356 403 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 7 20 0.0025 5.5 7.6 0.1 4 21 409 426 406 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 8 20 5.2e-05 0.12 12.9 0.5 1 26 434 457 434 457 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 9 20 2 4.4e+03 -1.6 0.2 2 10 461 469 460 471 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 10 20 0.036 81 3.9 0.1 15 25 730 740 723 741 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 11 20 8.1e-05 0.18 12.3 4.6 2 24 745 767 744 769 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 12 20 0.084 1.9e+02 2.7 0.2 2 23 773 796 773 797 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 13 20 7.1e-07 0.0016 18.8 0.4 2 25 803 828 802 829 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 14 20 0.015 33 5.1 0.0 15 24 868 877 834 877 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 15 20 2.3e-08 5.1e-05 23.5 0.1 1 24 883 906 883 908 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 16 20 2.9e-06 0.0065 16.9 2.7 1 26 911 936 911 936 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 17 20 4.7e-05 0.1 13.0 0.2 2 25 940 964 939 965 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 18 20 0.0037 8.4 7.0 5.2 2 23 969 990 968 992 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 19 20 0.0017 3.8 8.1 0.0 1 25 996 1039 996 1040 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFAT-217 - 1231 8.8e-40 133.4 129.1 20 20 0.75 1.7e+03 -0.3 0.1 2 11 1044 1053 1043 1058 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 1 19 0.12 2.7e+02 2.3 1.8 3 23 2 23 1 23 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 2 19 0.01 23 5.7 4.6 2 21 105 124 104 125 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 3 19 3.1e-08 6.9e-05 23.1 3.3 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 4 19 1.5e-05 0.035 14.6 0.2 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 5 19 0.00073 1.6 9.3 2.9 1 23 314 337 314 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 6 19 0.00014 0.31 11.6 2.5 3 23 344 365 343 365 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 7 19 0.00021 0.48 11.0 1.7 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 8 19 0.0098 22 5.8 0.2 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 9 19 2.9e-05 0.064 13.7 0.4 1 23 446 469 446 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 10 19 0.0019 4.3 8.0 0.9 2 23 731 752 730 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 11 19 0.011 24 5.6 6.0 1 23 758 781 758 781 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 12 19 8.6e-06 0.019 15.4 0.2 2 23 787 810 786 810 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 13 19 1.1e-05 0.026 15.0 0.5 1 23 818 841 818 841 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 14 19 0.015 33 5.2 0.1 2 20 869 888 868 890 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 15 19 3.4e-07 0.00076 19.8 1.5 1 23 897 919 897 919 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 16 19 6.8e-06 0.015 15.7 3.0 3 23 927 947 925 947 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 17 19 4.2e-05 0.094 13.2 0.3 1 23 954 976 954 976 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 18 19 0.0043 9.6 6.9 8.4 1 23 982 1005 982 1005 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFAT-217 - 1231 2.6e-36 122.0 159.0 19 19 5.7e-05 0.13 12.8 0.6 2 23 1030 1052 1029 1052 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 1 19 0.16 3.6e+02 2.5 2.3 3 24 2 23 1 23 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 2 19 0.00045 1 10.4 2.3 2 20 105 123 104 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 3 19 2.4e-06 0.0053 17.5 2.9 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 4 19 0.0003 0.68 10.9 0.3 1 23 287 309 287 310 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 5 19 0.00017 0.37 11.7 3.3 1 24 314 337 314 337 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 6 19 0.00022 0.5 11.3 1.7 3 24 344 365 343 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 7 19 0.0016 3.5 8.7 0.6 3 23 394 414 392 415 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 8 19 0.0061 14 6.9 0.3 1 23 420 442 420 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 9 19 2.7e-05 0.061 14.2 0.5 1 24 446 469 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 10 19 0.00035 0.78 10.7 1.2 2 23 731 752 730 753 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 11 19 0.0049 11 7.2 5.5 1 24 758 781 758 781 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 12 19 0.012 28 5.9 0.1 2 23 787 810 786 811 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 13 19 1.7e-05 0.038 14.8 0.4 1 24 818 841 818 841 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 14 19 0.00047 1.1 10.3 0.2 2 23 869 891 868 892 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 15 19 5.7e-05 0.13 13.2 1.2 1 23 897 919 897 920 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 16 19 2.3e-05 0.052 14.4 2.2 2 23 926 947 925 948 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 17 19 5.2e-05 0.12 13.3 0.3 1 23 954 976 954 977 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 18 19 0.17 3.8e+02 2.4 7.1 1 24 982 1005 982 1005 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFAT-217 - 1231 4.8e-32 107.9 153.4 19 19 2.7e-05 0.06 14.2 0.9 2 24 1030 1052 1029 1052 0.95 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 1 16 0.026 57 3.6 1.5 3 26 261 283 259 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 2 16 1.5e-12 3.4e-09 36.3 0.2 1 26 287 311 287 311 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 3 16 7.1e-07 0.0016 18.2 2.2 3 26 316 339 314 339 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 4 16 0.27 6e+02 0.3 0.0 14 25 355 366 352 367 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 5 16 0.18 4e+02 0.9 0.2 17 24 408 414 402 415 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 6 16 0.16 3.5e+02 1.1 0.1 15 24 434 442 422 443 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 7 16 1.6 3.5e+03 -2.1 0.4 16 24 461 469 460 470 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 8 16 4.7 1.1e+04 -3.7 1.3 19 25 748 753 747 753 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 9 16 6.8e-07 0.0015 18.2 7.6 1 25 758 782 758 783 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 10 16 8.4e-06 0.019 14.7 0.4 6 25 793 811 787 812 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 11 16 0.0012 2.7 7.8 1.3 2 25 869 892 869 893 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 12 16 1.5e-07 0.00033 20.4 2.8 1 25 897 920 897 921 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 13 16 4.8 1.1e+04 -3.7 1.0 11 25 935 948 935 948 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 14 16 4.1e-10 9.1e-07 28.5 0.2 1 24 954 976 954 977 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 15 16 0.00044 0.98 9.2 6.5 1 24 982 1005 982 1007 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFAT-217 - 1231 1.9e-30 104.2 115.7 16 16 2e-05 0.044 13.5 0.1 2 24 1030 1052 1029 1053 0.96 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 1 12 0.0073 16 5.9 0.6 5 29 2 27 1 30 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 2 12 3.2e-06 0.0071 16.6 3.2 3 51 259 308 257 311 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 3 12 0.1 2.3e+02 2.2 3.8 2 28 313 340 312 344 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 4 12 1.7e-05 0.039 14.3 0.3 4 32 343 372 340 374 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 5 12 1.3 2.8e+03 -1.3 0.1 34 49 394 411 387 414 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 6 12 0.0026 5.7 7.3 2.0 3 53 420 469 419 473 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 7 12 0.41 9.2e+02 0.2 7.8 4 53 731 781 729 782 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 8 12 1.4e-06 0.0031 17.8 1.0 13 53 799 841 785 849 0.59 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 9 12 6.4e-07 0.0014 18.8 0.7 3 50 868 917 866 921 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 10 12 0.00011 0.25 11.7 2.9 4 50 926 974 923 979 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 11 12 0.2 4.5e+02 1.2 2.1 3 29 982 1009 980 1013 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFAT-217 - 1231 1.5e-14 54.0 92.2 12 12 0.0023 5.2 7.4 0.0 4 26 1030 1053 1027 1057 0.71 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZFHX3-201 - 3703 1.6e-66 220.0 19.5 1 4 2.7e-16 4e-13 49.0 0.9 1 57 2146 2202 2146 2202 0.97 Homeodomain Homeodomain PF00046.29 57 ZFHX3-201 - 3703 1.6e-66 220.0 19.5 2 4 1.3e-20 1.9e-17 62.9 0.7 1 57 2243 2299 2243 2299 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-201 - 3703 1.6e-66 220.0 19.5 3 4 2.1e-20 3.1e-17 62.2 0.8 1 57 2642 2698 2642 2698 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-201 - 3703 1.6e-66 220.0 19.5 4 4 9.2e-19 1.4e-15 56.9 0.2 1 57 2947 3003 2947 3003 0.98 Homeodomain zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 1 23 0.091 1.4e+02 3.3 1.3 2 20 80 98 79 99 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 2 23 3.6 5.4e+03 -1.8 1.0 3 20 284 301 282 305 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 3 23 0.069 1e+02 3.6 0.1 2 23 641 663 640 663 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 4 23 1.9e-05 0.029 14.8 1.9 2 23 672 694 671 694 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 5 23 8.8e-06 0.013 15.9 0.7 1 23 726 750 726 750 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 6 23 0.0048 7.1 7.3 0.1 2 22 805 825 804 828 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 7 23 0.24 3.5e+02 2.0 0.1 1 20 945 965 945 967 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 8 23 6 9e+03 -2.5 0.0 12 21 1010 1019 1009 1020 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 9 23 0.69 1e+03 0.5 0.6 2 20 1041 1059 1040 1064 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 10 23 0.0045 6.7 7.4 1.7 1 23 1088 1112 1088 1112 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 11 23 0.027 41 4.9 0.4 1 23 1223 1246 1223 1246 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 12 23 0.61 9.2e+02 0.6 1.9 2 23 1253 1275 1252 1275 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 13 23 0.00042 0.63 10.6 0.2 1 23 1360 1385 1360 1385 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 14 23 0.00079 1.2 9.7 1.0 1 23 1401 1423 1401 1423 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 15 23 0.0013 1.9 9.1 3.8 3 23 1431 1452 1429 1452 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 16 23 0.00097 1.4 9.5 0.7 1 22 1545 1566 1545 1569 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 17 23 3.3e-06 0.005 17.2 0.4 1 23 1596 1620 1596 1620 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 18 23 0.5 7.4e+02 0.9 0.3 2 23 1984 2006 1983 2006 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 19 23 0.0002 0.3 11.6 0.8 1 22 2328 2349 2328 2349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 20 23 0.00027 0.4 11.2 0.9 1 23 2530 2552 2530 2552 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 21 23 0.00056 0.83 10.2 0.3 2 23 2712 2734 2712 2734 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 22 23 0.29 4.3e+02 1.7 0.2 2 22 3025 3045 3024 3048 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-201 - 3703 7.6e-14 51.3 156.3 23 23 0.2 3e+02 2.2 0.0 2 21 3466 3485 3465 3486 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 1 23 0.044 65 4.8 1.2 2 19 80 98 79 100 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 2 23 3.5 5.2e+03 -1.2 1.3 2 23 283 304 282 305 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 3 23 0.0039 5.8 8.0 0.1 2 24 641 663 640 663 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 4 23 0.0004 0.6 11.1 2.2 2 24 672 694 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 5 23 0.0034 5 8.2 0.1 1 22 726 747 726 749 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 6 23 0.28 4.1e+02 2.3 0.0 2 22 805 825 804 827 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 7 23 1.5 2.2e+03 0.0 0.0 1 21 945 966 945 968 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 8 23 0.43 6.4e+02 1.7 1.6 1 22 984 1005 984 1007 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 9 23 0.054 80 4.5 0.6 1 22 1088 1109 1088 1111 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 10 23 0.002 3 8.9 0.3 1 24 1223 1246 1223 1246 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 11 23 0.19 2.8e+02 2.8 1.5 2 24 1253 1275 1252 1275 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 12 23 0.003 4.4 8.4 0.1 6 24 1367 1385 1364 1385 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 13 23 0.0041 6.1 8.0 0.7 1 23 1401 1423 1401 1424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 14 23 7.1e-05 0.11 13.4 3.7 2 24 1430 1452 1429 1452 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 15 23 0.00047 0.71 10.9 0.3 1 22 1545 1566 1545 1568 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 16 23 0.0054 8 7.6 0.1 1 23 1596 1618 1596 1619 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 17 23 0.0087 13 6.9 0.5 2 24 1984 2006 1983 2006 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 18 23 0.0032 4.8 8.3 0.6 1 22 2328 2349 2328 2350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 19 23 0.0047 6.9 7.8 1.9 1 23 2530 2552 2530 2553 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 20 23 0.00045 0.68 10.9 0.4 2 24 2712 2734 2711 2734 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 21 23 0.13 1.9e+02 3.3 0.1 2 21 3025 3044 3024 3046 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 22 23 0.039 58 4.9 0.1 2 22 3466 3486 3465 3487 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-201 - 3703 1.3e-13 50.6 144.7 23 23 2.5 3.7e+03 -0.7 0.2 1 21 3529 3549 3529 3551 0.87 C2H2-type zinc finger Homeobox_KN PF05920.11 40 ZFHX3-201 - 3703 9e-11 41.5 2.2 1 4 0.0016 2.4 8.2 0.0 11 37 2170 2196 2169 2196 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-201 - 3703 9e-11 41.5 2.2 2 4 2.4e-05 0.036 14.0 0.1 8 39 2264 2295 2263 2296 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-201 - 3703 9e-11 41.5 2.2 3 4 7.9e-05 0.12 12.3 0.0 11 40 2666 2695 2661 2695 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-201 - 3703 9e-11 41.5 2.2 4 4 0.096 1.4e+02 2.5 0.0 24 39 2984 2999 2966 3000 0.83 Homeobox KN domain zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 1 18 0.4 6e+02 1.1 0.7 2 19 80 97 79 97 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 2 18 7.7 1.2e+04 -3.0 0.7 6 21 676 691 672 691 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 3 18 2.7e-07 0.0004 20.7 0.9 1 25 726 750 726 750 0.98 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 4 18 0.0034 5.1 7.6 0.1 1 25 804 828 804 828 0.98 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 5 18 0.052 78 3.9 0.2 1 13 945 957 945 961 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 6 18 8.6 1.3e+04 -3.2 4.4 1 25 984 1008 984 1008 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 7 18 1.3 1.9e+03 -0.5 0.1 2 12 1041 1051 1040 1058 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 8 18 6.6e-05 0.099 13.1 3.2 1 25 1088 1112 1088 1112 0.99 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 9 18 0.42 6.3e+02 1.0 0.2 2 20 1253 1271 1252 1272 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 10 18 0.11 1.6e+02 2.8 0.1 6 21 1367 1382 1365 1382 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 11 18 0.18 2.7e+02 2.2 1.3 2 20 1430 1448 1429 1450 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 12 18 0.0015 2.2 8.8 1.9 1 23 1545 1567 1545 1569 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 13 18 0.00078 1.2 9.7 1.0 1 23 1596 1618 1596 1620 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 14 18 0.18 2.6e+02 2.2 0.1 2 19 1984 2001 1983 2003 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 15 18 0.0027 4.1 7.9 0.0 3 23 2713 2733 2711 2734 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 16 18 0.011 17 6.0 0.2 2 25 3025 3048 3024 3048 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 17 18 0.0044 6.6 7.3 0.1 6 22 3470 3486 3465 3486 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-201 - 3703 4e-07 30.2 112.0 18 18 0.0059 8.8 6.9 1.0 1 25 3529 3553 3529 3553 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZFHX3-203 - 2789 4.4e-67 221.8 19.5 1 4 1.5e-16 3e-13 49.4 0.9 1 57 1232 1288 1232 1288 0.97 Homeodomain Homeodomain PF00046.29 57 ZFHX3-203 - 2789 4.4e-67 221.8 19.5 2 4 6.9e-21 1.4e-17 63.3 0.7 1 57 1329 1385 1329 1385 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-203 - 2789 4.4e-67 221.8 19.5 3 4 1.1e-20 2.3e-17 62.6 0.8 1 57 1728 1784 1728 1784 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-203 - 2789 4.4e-67 221.8 19.5 4 4 5.1e-19 1e-15 57.3 0.2 1 57 2033 2089 2033 2089 0.98 Homeodomain zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 1 18 0.8 1.6e+03 0.4 0.0 1 21 31 52 31 54 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 2 18 0.23 4.7e+02 2.1 1.6 1 22 70 91 70 93 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 3 18 9 1.8e+04 -2.9 0.2 2 19 127 144 126 145 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 4 18 0.03 59 4.9 0.6 1 22 174 195 174 197 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 5 18 0.0011 2.2 9.4 0.3 1 24 309 332 309 332 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 6 18 0.1 2e+02 3.2 1.5 2 24 339 361 338 361 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 7 18 0.0016 3.3 8.8 0.1 6 24 453 471 450 471 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 8 18 0.0023 4.5 8.4 0.7 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 9 18 3.9e-05 0.077 13.9 3.7 2 24 516 538 515 538 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 10 18 0.00026 0.52 11.3 0.3 1 22 631 652 631 654 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 11 18 0.003 5.9 8.0 0.1 1 23 682 704 682 705 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 12 18 0.0048 9.6 7.4 0.5 2 24 1070 1092 1069 1092 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 13 18 0.0018 3.5 8.7 0.6 1 22 1414 1435 1414 1436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 14 18 0.0026 5.1 8.2 1.9 1 23 1616 1638 1616 1639 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 15 18 0.00025 0.5 11.4 0.4 2 24 1798 1820 1797 1820 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 16 18 0.071 1.4e+02 3.7 0.1 2 21 2111 2130 2110 2132 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 17 18 0.022 43 5.3 0.1 2 22 2552 2572 2551 2573 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-203 - 2789 6.9e-13 48.2 106.3 18 18 1.4 2.7e+03 -0.3 0.2 1 21 2615 2635 2615 2637 0.87 C2H2-type zinc finger Homeobox_KN PF05920.11 40 ZFHX3-203 - 2789 2.2e-11 43.5 2.0 1 4 0.00087 1.7 8.6 0.0 11 37 1256 1282 1255 1282 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-203 - 2789 2.2e-11 43.5 2.0 2 4 1.3e-05 0.027 14.4 0.1 8 39 1350 1381 1349 1382 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-203 - 2789 2.2e-11 43.5 2.0 3 4 4.4e-05 0.088 12.7 0.0 11 40 1752 1781 1747 1781 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-203 - 2789 2.2e-11 43.5 2.0 4 4 0.053 1e+02 2.9 0.0 24 39 2070 2085 2048 2086 0.84 Homeobox KN domain zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 1 18 0.13 2.6e+02 2.4 0.1 1 21 31 52 31 53 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 2 18 7.4 1.5e+04 -3.2 3.5 1 19 70 88 70 94 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 3 18 3.4 6.7e+03 -2.1 0.0 12 21 96 105 95 106 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 4 18 0.38 7.5e+02 0.9 0.6 2 20 127 145 126 150 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 5 18 0.0025 5 7.8 1.7 1 23 174 198 174 198 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 6 18 0.015 30 5.3 0.4 1 23 309 332 309 332 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 7 18 0.34 6.8e+02 1.1 1.9 2 23 339 361 338 361 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 8 18 0.00023 0.46 11.0 0.2 1 23 446 471 446 471 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 9 18 0.00044 0.87 10.2 1.0 1 23 487 509 487 509 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 10 18 0.00071 1.4 9.5 3.8 3 23 517 538 515 538 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 11 18 0.00053 1.1 9.9 0.7 1 22 631 652 631 655 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 12 18 1.8e-06 0.0037 17.7 0.4 1 23 682 706 682 706 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 13 18 0.28 5.5e+02 1.4 0.3 2 23 1070 1092 1069 1092 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 14 18 0.00011 0.22 12.0 0.8 1 22 1414 1435 1414 1435 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 15 18 0.00015 0.3 11.6 0.9 1 23 1616 1638 1616 1638 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 16 18 0.00031 0.61 10.7 0.3 2 23 1798 1820 1798 1820 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 17 18 0.16 3.1e+02 2.1 0.2 2 22 2111 2131 2110 2134 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-203 - 2789 4.8e-11 42.5 114.2 18 18 0.11 2.2e+02 2.6 0.0 2 21 2552 2571 2551 2572 0.92 Zinc finger, C2H2 type zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 1 8 0.78 1.5e+03 -0.5 0.0 33 51 32 53 27 56 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 2 8 1.6 3.1e+03 -1.5 1.3 2 29 69 97 68 106 0.63 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 3 8 0.066 1.3e+02 2.9 2.3 16 53 155 198 149 199 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 4 8 4.3e-09 8.6e-06 26.0 5.6 2 53 308 359 307 362 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 5 8 2.5 5e+03 -2.1 0.1 8 28 453 474 453 477 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 6 8 0.19 3.8e+02 1.5 4.1 3 53 487 538 485 539 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 7 8 0.13 2.6e+02 2.0 0.1 29 49 628 656 621 661 0.60 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZFHX3-203 - 2789 8.6e-06 26.0 5.6 8 8 0.00044 0.87 9.9 0.2 4 30 1798 1825 1795 1827 0.81 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZFHX3-208 - 3703 1.6e-66 220.0 19.5 1 4 2.7e-16 4e-13 49.0 0.9 1 57 2146 2202 2146 2202 0.97 Homeodomain Homeodomain PF00046.29 57 ZFHX3-208 - 3703 1.6e-66 220.0 19.5 2 4 1.3e-20 1.9e-17 62.9 0.7 1 57 2243 2299 2243 2299 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-208 - 3703 1.6e-66 220.0 19.5 3 4 2.1e-20 3.1e-17 62.2 0.8 1 57 2642 2698 2642 2698 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX3-208 - 3703 1.6e-66 220.0 19.5 4 4 9.2e-19 1.4e-15 56.9 0.2 1 57 2947 3003 2947 3003 0.98 Homeodomain zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 1 23 0.091 1.4e+02 3.3 1.3 2 20 80 98 79 99 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 2 23 3.6 5.4e+03 -1.8 1.0 3 20 284 301 282 305 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 3 23 0.069 1e+02 3.6 0.1 2 23 641 663 640 663 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 4 23 1.9e-05 0.029 14.8 1.9 2 23 672 694 671 694 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 5 23 8.8e-06 0.013 15.9 0.7 1 23 726 750 726 750 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 6 23 0.0048 7.1 7.3 0.1 2 22 805 825 804 828 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 7 23 0.24 3.5e+02 2.0 0.1 1 20 945 965 945 967 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 8 23 6 9e+03 -2.5 0.0 12 21 1010 1019 1009 1020 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 9 23 0.69 1e+03 0.5 0.6 2 20 1041 1059 1040 1064 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 10 23 0.0045 6.7 7.4 1.7 1 23 1088 1112 1088 1112 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 11 23 0.027 41 4.9 0.4 1 23 1223 1246 1223 1246 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 12 23 0.61 9.2e+02 0.6 1.9 2 23 1253 1275 1252 1275 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 13 23 0.00042 0.63 10.6 0.2 1 23 1360 1385 1360 1385 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 14 23 0.00079 1.2 9.7 1.0 1 23 1401 1423 1401 1423 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 15 23 0.0013 1.9 9.1 3.8 3 23 1431 1452 1429 1452 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 16 23 0.00097 1.4 9.5 0.7 1 22 1545 1566 1545 1569 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 17 23 3.3e-06 0.005 17.2 0.4 1 23 1596 1620 1596 1620 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 18 23 0.5 7.4e+02 0.9 0.3 2 23 1984 2006 1983 2006 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 19 23 0.0002 0.3 11.6 0.8 1 22 2328 2349 2328 2349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 20 23 0.00027 0.4 11.2 0.9 1 23 2530 2552 2530 2552 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 21 23 0.00056 0.83 10.2 0.3 2 23 2712 2734 2712 2734 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 22 23 0.29 4.3e+02 1.7 0.2 2 22 3025 3045 3024 3048 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFHX3-208 - 3703 7.6e-14 51.3 156.3 23 23 0.2 3e+02 2.2 0.0 2 21 3466 3485 3465 3486 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 1 23 0.044 65 4.8 1.2 2 19 80 98 79 100 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 2 23 3.5 5.2e+03 -1.2 1.3 2 23 283 304 282 305 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 3 23 0.0039 5.8 8.0 0.1 2 24 641 663 640 663 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 4 23 0.0004 0.6 11.1 2.2 2 24 672 694 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 5 23 0.0034 5 8.2 0.1 1 22 726 747 726 749 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 6 23 0.28 4.1e+02 2.3 0.0 2 22 805 825 804 827 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 7 23 1.5 2.2e+03 0.0 0.0 1 21 945 966 945 968 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 8 23 0.43 6.4e+02 1.7 1.6 1 22 984 1005 984 1007 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 9 23 0.054 80 4.5 0.6 1 22 1088 1109 1088 1111 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 10 23 0.002 3 8.9 0.3 1 24 1223 1246 1223 1246 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 11 23 0.19 2.8e+02 2.8 1.5 2 24 1253 1275 1252 1275 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 12 23 0.003 4.4 8.4 0.1 6 24 1367 1385 1364 1385 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 13 23 0.0041 6.1 8.0 0.7 1 23 1401 1423 1401 1424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 14 23 7.1e-05 0.11 13.4 3.7 2 24 1430 1452 1429 1452 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 15 23 0.00047 0.71 10.9 0.3 1 22 1545 1566 1545 1568 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 16 23 0.0054 8 7.6 0.1 1 23 1596 1618 1596 1619 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 17 23 0.0087 13 6.9 0.5 2 24 1984 2006 1983 2006 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 18 23 0.0032 4.8 8.3 0.6 1 22 2328 2349 2328 2350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 19 23 0.0047 6.9 7.8 1.9 1 23 2530 2552 2530 2553 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 20 23 0.00045 0.68 10.9 0.4 2 24 2712 2734 2711 2734 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 21 23 0.13 1.9e+02 3.3 0.1 2 21 3025 3044 3024 3046 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 22 23 0.039 58 4.9 0.1 2 22 3466 3486 3465 3487 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFHX3-208 - 3703 1.3e-13 50.6 144.7 23 23 2.5 3.7e+03 -0.7 0.2 1 21 3529 3549 3529 3551 0.87 C2H2-type zinc finger Homeobox_KN PF05920.11 40 ZFHX3-208 - 3703 9e-11 41.5 2.2 1 4 0.0016 2.4 8.2 0.0 11 37 2170 2196 2169 2196 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-208 - 3703 9e-11 41.5 2.2 2 4 2.4e-05 0.036 14.0 0.1 8 39 2264 2295 2263 2296 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-208 - 3703 9e-11 41.5 2.2 3 4 7.9e-05 0.12 12.3 0.0 11 40 2666 2695 2661 2695 0.96 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX3-208 - 3703 9e-11 41.5 2.2 4 4 0.096 1.4e+02 2.5 0.0 24 39 2984 2999 2966 3000 0.83 Homeobox KN domain zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 1 18 0.4 6e+02 1.1 0.7 2 19 80 97 79 97 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 2 18 7.7 1.2e+04 -3.0 0.7 6 21 676 691 672 691 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 3 18 2.7e-07 0.0004 20.7 0.9 1 25 726 750 726 750 0.98 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 4 18 0.0034 5.1 7.6 0.1 1 25 804 828 804 828 0.98 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 5 18 0.052 78 3.9 0.2 1 13 945 957 945 961 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 6 18 8.6 1.3e+04 -3.2 4.4 1 25 984 1008 984 1008 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 7 18 1.3 1.9e+03 -0.5 0.1 2 12 1041 1051 1040 1058 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 8 18 6.6e-05 0.099 13.1 3.2 1 25 1088 1112 1088 1112 0.99 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 9 18 0.42 6.3e+02 1.0 0.2 2 20 1253 1271 1252 1272 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 10 18 0.11 1.6e+02 2.8 0.1 6 21 1367 1382 1365 1382 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 11 18 0.18 2.7e+02 2.2 1.3 2 20 1430 1448 1429 1450 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 12 18 0.0015 2.2 8.8 1.9 1 23 1545 1567 1545 1569 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 13 18 0.00078 1.2 9.7 1.0 1 23 1596 1618 1596 1620 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 14 18 0.18 2.6e+02 2.2 0.1 2 19 1984 2001 1983 2003 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 15 18 0.0027 4.1 7.9 0.0 3 23 2713 2733 2711 2734 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 16 18 0.011 17 6.0 0.2 2 25 3025 3048 3024 3048 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 17 18 0.0044 6.6 7.3 0.1 6 22 3470 3486 3465 3486 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFHX3-208 - 3703 4e-07 30.2 112.0 18 18 0.0059 8.8 6.9 1.0 1 25 3529 3553 3529 3553 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:35 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 1 14 2.3e-06 0.0024 18.2 0.8 7 24 150 167 149 168 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 2 14 1.2e-11 1.2e-08 34.9 0.8 2 25 173 196 172 197 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 3 14 4.4e-09 4.6e-06 26.8 4.1 1 25 200 224 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 4 14 5.2e-11 5.4e-08 32.9 0.2 1 24 228 251 228 252 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 5 14 5.6e-12 5.9e-09 36.0 0.4 2 25 257 280 256 281 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 6 14 0.0017 1.8 9.1 2.4 1 25 284 308 284 309 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 7 14 2.6e-10 2.7e-07 30.7 2.3 1 24 312 335 312 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 8 14 8.1e-11 8.6e-08 32.3 0.6 2 25 341 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 9 14 3.5e-10 3.7e-07 30.3 3.2 1 25 368 392 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 10 14 1.6e-09 1.7e-06 28.2 0.1 2 24 397 419 396 420 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 11 14 1.9e-08 2e-05 24.8 1.9 2 24 425 447 424 448 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 12 14 7.2e-10 7.6e-07 29.3 0.3 2 24 453 475 452 476 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 13 14 1.9e-10 2e-07 31.1 1.0 2 25 481 504 480 505 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-201 - 519 6.8e-93 301.3 104.9 14 14 0.23 2.4e+02 2.4 1.0 1 11 508 518 508 519 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 1 13 5.9e-06 0.0063 16.9 0.3 1 23 158 180 158 180 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 2 13 2.9e-08 3.1e-05 24.2 3.6 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 3 13 4.9e-06 0.0052 17.2 1.6 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 4 13 6.3e-08 6.6e-05 23.1 0.2 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 5 13 3.2e-08 3.3e-05 24.1 0.8 1 21 270 290 270 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 6 13 0.054 57 4.5 2.6 1 23 298 320 298 320 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 7 13 9.6e-08 0.0001 22.6 0.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 8 13 3.4e-08 3.5e-05 24.0 2.3 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 9 13 6.3e-07 0.00067 20.0 0.9 1 23 382 404 382 404 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 10 13 3.4e-07 0.00036 20.8 0.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 11 13 6.2e-07 0.00065 20.0 1.4 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 12 13 2.8e-07 0.00029 21.1 1.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-201 - 519 1e-59 195.7 104.6 13 13 3.4e-07 0.00036 20.8 7.0 1 23 494 516 494 516 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 1 13 0.0003 0.31 12.0 0.3 1 23 158 180 158 181 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 2 13 1.6e-05 0.017 15.9 3.3 1 23 186 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 3 13 9.5e-06 0.01 16.6 0.9 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 4 13 0.00018 0.19 12.6 0.2 1 23 242 264 242 265 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 5 13 6.1e-05 0.064 14.1 0.7 1 21 270 290 270 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 6 13 0.00022 0.23 12.4 2.8 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 7 13 0.00021 0.22 12.4 0.5 1 23 326 348 326 349 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 8 13 0.00027 0.28 12.1 1.3 3 23 356 376 354 377 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 9 13 0.00061 0.64 11.0 0.8 1 22 382 403 382 404 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 10 13 0.00028 0.3 12.1 0.9 1 23 410 432 410 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 11 13 0.00014 0.15 13.0 1.4 1 23 438 460 438 461 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 12 13 0.00033 0.35 11.8 1.1 3 23 468 488 466 489 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-201 - 519 2e-30 102.8 100.8 13 13 0.0014 1.5 9.9 5.1 1 23 494 516 494 517 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP30-201 - 519 1.7e-23 81.9 1.6 1 1 4.1e-26 4.3e-23 80.7 1.6 1 41 5 45 5 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 1 13 0.0059 6.2 6.9 0.4 2 17 158 173 158 181 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 2 13 0.00052 0.55 10.3 0.7 2 12 186 196 186 197 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 3 13 0.0032 3.3 7.8 1.3 2 22 214 234 213 236 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 4 13 0.00065 0.69 10.0 0.8 2 12 242 252 242 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 5 13 7.8e-05 0.083 12.9 1.0 2 20 270 288 270 290 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 6 13 0.067 71 3.6 2.5 2 11 298 307 297 319 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 7 13 0.00019 0.2 11.7 0.4 2 18 326 342 326 349 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 8 13 2.1e-05 0.022 14.7 1.5 2 22 354 374 354 378 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 9 13 5e-05 0.053 13.5 1.1 2 20 382 400 382 404 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 10 13 0.0003 0.32 11.1 1.0 2 17 410 425 410 432 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 11 13 0.00044 0.46 10.5 1.2 2 20 438 456 438 461 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 12 13 0.0017 1.7 8.7 0.9 2 24 466 488 466 491 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-201 - 519 1.4e-19 69.6 96.5 13 13 0.0016 1.7 8.8 1.7 2 12 494 504 494 512 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 1 13 9.5 1e+04 -3.2 0.2 1 4 136 139 136 140 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 2 13 0.00036 0.38 10.9 7.8 6 37 158 196 157 198 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 3 13 0.0005 0.52 10.5 7.3 6 34 186 221 185 221 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 4 13 1.5e-06 0.0016 18.5 4.0 6 36 214 251 213 257 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 5 13 1.4e-05 0.015 15.4 5.2 6 37 242 280 241 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 6 13 0.0052 5.5 7.2 9.1 6 34 270 305 268 309 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 7 13 0.0057 6 7.1 9.4 6 36 298 337 297 341 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 8 13 4.4e-06 0.0046 17.0 4.2 6 38 326 365 325 367 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 9 13 4.6e-05 0.049 13.8 3.9 6 35 354 390 353 394 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 10 13 0.0013 1.4 9.1 6.4 6 35 410 446 409 448 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 11 13 4.7e-05 0.05 13.7 3.9 6 36 438 475 436 478 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 12 13 0.00017 0.18 11.9 4.7 6 37 466 504 465 506 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-201 - 519 1.5e-13 50.6 85.5 13 13 0.032 33 4.7 0.9 6 16 494 504 492 510 0.86 Zinc ribbon domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 1 10 0.015 16 5.8 0.1 21 49 153 181 138 183 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 2 10 0.00016 0.17 12.1 7.4 1 48 187 236 187 239 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 3 10 0.015 16 5.9 0.0 25 49 241 265 237 267 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 4 10 0.00036 0.38 11.0 5.6 1 49 271 321 271 324 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 5 10 0.026 27 5.1 0.1 25 49 325 349 321 352 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 6 10 0.012 12 6.2 3.8 2 35 356 391 355 406 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 7 10 0.024 25 5.2 4.5 1 48 383 432 383 435 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 8 10 0.0087 9.1 6.6 3.2 2 49 412 461 411 464 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 9 10 0.0015 1.6 9.1 3.1 1 49 439 489 439 491 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-201 - 519 1e-08 35.3 66.5 10 10 0.037 39 4.6 6.4 2 49 468 517 467 519 0.75 TFIIH C1-like domain XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 1 13 0.046 49 4.1 0.1 3 11 159 167 157 169 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 2 13 0.023 25 5.0 1.7 3 12 187 196 185 198 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 3 13 0.071 75 3.5 1.5 3 12 215 224 214 226 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 4 13 0.01 11 6.2 0.2 3 11 243 251 241 253 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 5 13 0.0095 10 6.3 0.3 3 12 271 280 269 281 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 6 13 0.016 17 5.6 1.6 3 14 299 310 298 311 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 7 13 0.01 11 6.2 0.2 3 11 327 335 325 337 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 8 13 0.0038 4 7.6 0.1 3 15 355 367 353 370 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 9 13 0.085 90 3.2 0.6 3 11 383 391 381 393 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 10 13 0.008 8.4 6.5 0.2 3 11 411 419 409 428 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 11 13 0.012 13 5.9 0.3 3 11 439 447 437 456 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 12 13 0.0098 10 6.3 0.1 3 11 467 475 465 484 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-201 - 519 1.8e-06 27.9 70.8 13 13 0.016 17 5.6 0.2 3 12 495 504 493 509 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP30-202 - 76 6e-26 89.8 0.7 1 1 4.2e-30 7.5e-26 89.5 0.7 1 42 5 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 1 14 2.3e-06 0.0024 18.2 0.8 7 24 150 167 149 168 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 2 14 1.2e-11 1.2e-08 34.9 0.8 2 25 173 196 172 197 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 3 14 4.4e-09 4.6e-06 26.8 4.1 1 25 200 224 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 4 14 5.2e-11 5.4e-08 32.9 0.2 1 24 228 251 228 252 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 5 14 5.6e-12 5.9e-09 36.0 0.4 2 25 257 280 256 281 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 6 14 0.0017 1.8 9.1 2.4 1 25 284 308 284 309 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 7 14 2.6e-10 2.7e-07 30.7 2.3 1 24 312 335 312 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 8 14 8.1e-11 8.6e-08 32.3 0.6 2 25 341 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 9 14 3.5e-10 3.7e-07 30.3 3.2 1 25 368 392 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 10 14 1.6e-09 1.7e-06 28.2 0.1 2 24 397 419 396 420 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 11 14 1.9e-08 2e-05 24.8 1.9 2 24 425 447 424 448 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 12 14 7.2e-10 7.6e-07 29.3 0.3 2 24 453 475 452 476 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 13 14 1.9e-10 2e-07 31.1 1.0 2 25 481 504 480 505 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP30-203 - 519 6.8e-93 301.3 104.9 14 14 0.23 2.4e+02 2.4 1.0 1 11 508 518 508 519 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 1 13 5.9e-06 0.0063 16.9 0.3 1 23 158 180 158 180 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 2 13 2.9e-08 3.1e-05 24.2 3.6 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 3 13 4.9e-06 0.0052 17.2 1.6 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 4 13 6.3e-08 6.6e-05 23.1 0.2 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 5 13 3.2e-08 3.3e-05 24.1 0.8 1 21 270 290 270 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 6 13 0.054 57 4.5 2.6 1 23 298 320 298 320 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 7 13 9.6e-08 0.0001 22.6 0.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 8 13 3.4e-08 3.5e-05 24.0 2.3 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 9 13 6.3e-07 0.00067 20.0 0.9 1 23 382 404 382 404 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 10 13 3.4e-07 0.00036 20.8 0.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 11 13 6.2e-07 0.00065 20.0 1.4 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 12 13 2.8e-07 0.00029 21.1 1.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP30-203 - 519 1e-59 195.7 104.6 13 13 3.4e-07 0.00036 20.8 7.0 1 23 494 516 494 516 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 1 13 0.0003 0.31 12.0 0.3 1 23 158 180 158 181 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 2 13 1.6e-05 0.017 15.9 3.3 1 23 186 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 3 13 9.5e-06 0.01 16.6 0.9 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 4 13 0.00018 0.19 12.6 0.2 1 23 242 264 242 265 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 5 13 6.1e-05 0.064 14.1 0.7 1 21 270 290 270 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 6 13 0.00022 0.23 12.4 2.8 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 7 13 0.00021 0.22 12.4 0.5 1 23 326 348 326 349 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 8 13 0.00027 0.28 12.1 1.3 3 23 356 376 354 377 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 9 13 0.00061 0.64 11.0 0.8 1 22 382 403 382 404 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 10 13 0.00028 0.3 12.1 0.9 1 23 410 432 410 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 11 13 0.00014 0.15 13.0 1.4 1 23 438 460 438 461 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 12 13 0.00033 0.35 11.8 1.1 3 23 468 488 466 489 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP30-203 - 519 2e-30 102.8 100.8 13 13 0.0014 1.5 9.9 5.1 1 23 494 516 494 517 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP30-203 - 519 1.7e-23 81.9 1.6 1 1 4.1e-26 4.3e-23 80.7 1.6 1 41 5 45 5 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 1 13 0.0059 6.2 6.9 0.4 2 17 158 173 158 181 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 2 13 0.00052 0.55 10.3 0.7 2 12 186 196 186 197 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 3 13 0.0032 3.3 7.8 1.3 2 22 214 234 213 236 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 4 13 0.00065 0.69 10.0 0.8 2 12 242 252 242 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 5 13 7.8e-05 0.083 12.9 1.0 2 20 270 288 270 290 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 6 13 0.067 71 3.6 2.5 2 11 298 307 297 319 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 7 13 0.00019 0.2 11.7 0.4 2 18 326 342 326 349 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 8 13 2.1e-05 0.022 14.7 1.5 2 22 354 374 354 378 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 9 13 5e-05 0.053 13.5 1.1 2 20 382 400 382 404 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 10 13 0.0003 0.32 11.1 1.0 2 17 410 425 410 432 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 11 13 0.00044 0.46 10.5 1.2 2 20 438 456 438 461 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 12 13 0.0017 1.7 8.7 0.9 2 24 466 488 466 491 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP30-203 - 519 1.4e-19 69.6 96.5 13 13 0.0016 1.7 8.8 1.7 2 12 494 504 494 512 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 1 13 9.5 1e+04 -3.2 0.2 1 4 136 139 136 140 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 2 13 0.00036 0.38 10.9 7.8 6 37 158 196 157 198 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 3 13 0.0005 0.52 10.5 7.3 6 34 186 221 185 221 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 4 13 1.5e-06 0.0016 18.5 4.0 6 36 214 251 213 257 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 5 13 1.4e-05 0.015 15.4 5.2 6 37 242 280 241 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 6 13 0.0052 5.5 7.2 9.1 6 34 270 305 268 309 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 7 13 0.0057 6 7.1 9.4 6 36 298 337 297 341 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 8 13 4.4e-06 0.0046 17.0 4.2 6 38 326 365 325 367 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 9 13 4.6e-05 0.049 13.8 3.9 6 35 354 390 353 394 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 10 13 0.0013 1.4 9.1 6.4 6 35 410 446 409 448 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 11 13 4.7e-05 0.05 13.7 3.9 6 36 438 475 436 478 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 12 13 0.00017 0.18 11.9 4.7 6 37 466 504 465 506 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP30-203 - 519 1.5e-13 50.6 85.5 13 13 0.032 33 4.7 0.9 6 16 494 504 492 510 0.86 Zinc ribbon domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 1 10 0.015 16 5.8 0.1 21 49 153 181 138 183 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 2 10 0.00016 0.17 12.1 7.4 1 48 187 236 187 239 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 3 10 0.015 16 5.9 0.0 25 49 241 265 237 267 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 4 10 0.00036 0.38 11.0 5.6 1 49 271 321 271 324 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 5 10 0.026 27 5.1 0.1 25 49 325 349 321 352 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 6 10 0.012 12 6.2 3.8 2 35 356 391 355 406 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 7 10 0.024 25 5.2 4.5 1 48 383 432 383 435 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 8 10 0.0087 9.1 6.6 3.2 2 49 412 461 411 464 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 9 10 0.0015 1.6 9.1 3.1 1 49 439 489 439 491 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP30-203 - 519 1e-08 35.3 66.5 10 10 0.037 39 4.6 6.4 2 49 468 517 467 519 0.75 TFIIH C1-like domain XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 1 13 0.046 49 4.1 0.1 3 11 159 167 157 169 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 2 13 0.023 25 5.0 1.7 3 12 187 196 185 198 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 3 13 0.071 75 3.5 1.5 3 12 215 224 214 226 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 4 13 0.01 11 6.2 0.2 3 11 243 251 241 253 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 5 13 0.0095 10 6.3 0.3 3 12 271 280 269 281 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 6 13 0.016 17 5.6 1.6 3 14 299 310 298 311 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 7 13 0.01 11 6.2 0.2 3 11 327 335 325 337 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 8 13 0.0038 4 7.6 0.1 3 15 355 367 353 370 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 9 13 0.085 90 3.2 0.6 3 11 383 391 381 393 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 10 13 0.008 8.4 6.5 0.2 3 11 411 419 409 428 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 11 13 0.012 13 5.9 0.3 3 11 439 447 437 456 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 12 13 0.0098 10 6.3 0.1 3 11 467 475 465 484 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP30-203 - 519 1.8e-06 27.9 70.8 13 13 0.016 17 5.6 0.2 3 12 495 504 493 509 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP30-208 - 92 8.9e-26 89.3 0.7 1 1 1.4e-29 1.2e-25 88.8 0.7 1 42 5 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- G-patch PF01585.23 45 ZGPAT-201 - 531 3.8e-12 45.9 0.1 1 1 4.9e-15 9.7e-12 44.6 0.1 1 42 333 374 333 376 0.95 G-patch domain zf-CCCH_4 PF18044.1 22 ZGPAT-201 - 531 9.6e-07 28.5 5.1 1 1 9.8e-10 1.9e-06 27.5 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-201 - 531 2.8e-06 27.2 3.8 1 1 3e-09 6.1e-06 26.1 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- G-patch PF01585.23 45 ZGPAT-202 - 511 3.6e-12 46.0 0.1 1 1 4.6e-15 9.2e-12 44.7 0.1 1 42 313 354 313 356 0.95 G-patch domain zf-CCCH_4 PF18044.1 22 ZGPAT-202 - 511 1.1e-06 28.3 5.1 1 1 9.4e-10 1.9e-06 27.5 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-202 - 511 2.6e-06 27.3 3.8 1 1 2.9e-09 5.8e-06 26.2 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- G-patch PF01585.23 45 ZGPAT-203 - 502 3.4e-12 46.1 0.1 1 1 4.5e-15 9e-12 44.7 0.1 1 42 304 345 304 347 0.95 G-patch domain zf-CCCH_4 PF18044.1 22 ZGPAT-203 - 502 1.1e-06 28.3 5.1 1 1 9.2e-10 1.8e-06 27.6 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-203 - 502 2.6e-06 27.3 3.8 1 1 2.8e-09 5.7e-06 26.2 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- G-patch PF01585.23 45 ZGPAT-204 - 511 3.6e-12 46.0 0.1 1 1 4.6e-15 9.2e-12 44.7 0.1 1 42 313 354 313 356 0.95 G-patch domain zf-CCCH_4 PF18044.1 22 ZGPAT-204 - 511 1.1e-06 28.3 5.1 1 1 9.4e-10 1.9e-06 27.5 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-204 - 511 2.6e-06 27.3 3.8 1 1 2.9e-09 5.8e-06 26.2 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- G-patch PF01585.23 45 ZGPAT-206 - 511 3.6e-12 46.0 0.1 1 1 4.6e-15 9.2e-12 44.7 0.1 1 42 313 354 313 356 0.95 G-patch domain zf-CCCH_4 PF18044.1 22 ZGPAT-206 - 511 1.1e-06 28.3 5.1 1 1 9.4e-10 1.9e-06 27.5 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-206 - 511 2.6e-06 27.3 3.8 1 1 2.9e-09 5.8e-06 26.2 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-CCCH_4 PF18044.1 22 ZGPAT-209 - 318 7e-07 28.9 5.1 1 1 4.1e-10 1e-06 28.3 5.1 1 22 178 199 178 199 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-209 - 318 1.8e-06 27.8 3.8 1 1 1.3e-09 3.3e-06 27.0 3.8 1 19 180 198 180 198 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-CCCH_4 PF18044.1 22 ZGPAT-210 - 195 3.5e-07 29.9 5.1 1 1 1.8e-10 5.5e-07 29.2 5.1 1 22 28 49 28 49 0.96 CCCH-type zinc finger zf_CCCH_4 PF18345.1 19 ZGPAT-210 - 195 1.7e-06 27.8 3.8 1 2 5.9e-10 1.7e-06 27.8 3.8 1 19 30 48 30 48 0.99 Zinc finger domain zf_CCCH_4 PF18345.1 19 ZGPAT-210 - 195 1.7e-06 27.8 3.8 2 2 3.6 1.1e+04 -3.3 0.1 7 10 150 153 149 153 0.80 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX1-201 - 873 4.1e-35 119.4 14.7 1 5 2.5e-09 7.5e-06 25.7 0.0 15 55 299 339 297 339 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX1-201 - 873 4.1e-35 119.4 14.7 2 5 1e-09 3.1e-06 26.9 0.3 4 56 468 520 467 521 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-201 - 873 4.1e-35 119.4 14.7 3 5 1.6e-09 4.8e-06 26.3 1.1 8 52 576 620 573 623 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-201 - 873 4.1e-35 119.4 14.7 4 5 1.9e-10 5.6e-07 29.3 0.0 8 56 668 716 665 717 0.97 Homeodomain Homeodomain PF00046.29 57 ZHX1-201 - 873 4.1e-35 119.4 14.7 5 5 1.5e-06 0.0044 16.8 0.1 12 52 782 822 779 825 0.92 Homeodomain zf_C2H2_ZHX PF18387.1 53 ZHX1-201 - 873 4.7e-24 83.8 0.4 1 3 0.19 5.6e+02 0.3 0.1 5 29 70 94 67 97 0.87 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-201 - 873 4.7e-24 83.8 0.4 2 3 1.6e-27 4.7e-24 83.8 0.4 2 53 99 150 98 150 0.97 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-201 - 873 4.7e-24 83.8 0.4 3 3 2 6e+03 -3.0 0.0 26 35 241 250 240 252 0.82 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 57 ZHX1-201 - 873 5.8e-21 73.7 6.7 1 5 0.0022 6.5 6.3 0.0 29 50 314 335 311 340 0.86 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-201 - 873 5.8e-21 73.7 6.7 2 5 0.0041 12 5.4 0.0 25 49 490 514 479 521 0.83 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-201 - 873 5.8e-21 73.7 6.7 3 5 5.4e-05 0.16 11.5 0.2 21 55 590 624 579 626 0.85 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-201 - 873 5.8e-21 73.7 6.7 4 5 0.0058 17 5.0 0.0 30 48 691 709 681 713 0.92 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-201 - 873 5.8e-21 73.7 6.7 5 5 3.3e-15 9.7e-12 44.2 0.3 14 52 785 823 783 826 0.95 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 40 ZHX1-201 - 873 1.2e-18 66.6 9.1 1 5 1.8e-07 0.00053 19.8 0.1 3 38 300 336 299 338 0.90 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-201 - 873 1.2e-18 66.6 9.1 2 5 2.4e-05 0.07 13.0 0.0 6 38 484 516 481 517 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-201 - 873 1.2e-18 66.6 9.1 3 5 0.0002 0.6 10.1 0.5 12 35 594 617 593 621 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-201 - 873 1.2e-18 66.6 9.1 4 5 1.7e-06 0.0051 16.7 0.0 10 38 684 712 681 713 0.95 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-201 - 873 1.2e-18 66.6 9.1 5 5 0.0014 4.3 7.3 0.1 13 40 797 824 791 824 0.89 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX1-202 - 873 4.1e-35 119.4 14.7 1 5 2.5e-09 7.5e-06 25.7 0.0 15 55 299 339 297 339 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX1-202 - 873 4.1e-35 119.4 14.7 2 5 1e-09 3.1e-06 26.9 0.3 4 56 468 520 467 521 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-202 - 873 4.1e-35 119.4 14.7 3 5 1.6e-09 4.8e-06 26.3 1.1 8 52 576 620 573 623 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-202 - 873 4.1e-35 119.4 14.7 4 5 1.9e-10 5.6e-07 29.3 0.0 8 56 668 716 665 717 0.97 Homeodomain Homeodomain PF00046.29 57 ZHX1-202 - 873 4.1e-35 119.4 14.7 5 5 1.5e-06 0.0044 16.8 0.1 12 52 782 822 779 825 0.92 Homeodomain zf_C2H2_ZHX PF18387.1 53 ZHX1-202 - 873 4.7e-24 83.8 0.4 1 3 0.19 5.6e+02 0.3 0.1 5 29 70 94 67 97 0.87 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-202 - 873 4.7e-24 83.8 0.4 2 3 1.6e-27 4.7e-24 83.8 0.4 2 53 99 150 98 150 0.97 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-202 - 873 4.7e-24 83.8 0.4 3 3 2 6e+03 -3.0 0.0 26 35 241 250 240 252 0.82 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 57 ZHX1-202 - 873 5.8e-21 73.7 6.7 1 5 0.0022 6.5 6.3 0.0 29 50 314 335 311 340 0.86 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-202 - 873 5.8e-21 73.7 6.7 2 5 0.0041 12 5.4 0.0 25 49 490 514 479 521 0.83 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-202 - 873 5.8e-21 73.7 6.7 3 5 5.4e-05 0.16 11.5 0.2 21 55 590 624 579 626 0.85 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-202 - 873 5.8e-21 73.7 6.7 4 5 0.0058 17 5.0 0.0 30 48 691 709 681 713 0.92 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-202 - 873 5.8e-21 73.7 6.7 5 5 3.3e-15 9.7e-12 44.2 0.3 14 52 785 823 783 826 0.95 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 40 ZHX1-202 - 873 1.2e-18 66.6 9.1 1 5 1.8e-07 0.00053 19.8 0.1 3 38 300 336 299 338 0.90 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-202 - 873 1.2e-18 66.6 9.1 2 5 2.4e-05 0.07 13.0 0.0 6 38 484 516 481 517 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-202 - 873 1.2e-18 66.6 9.1 3 5 0.0002 0.6 10.1 0.5 12 35 594 617 593 621 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-202 - 873 1.2e-18 66.6 9.1 4 5 1.7e-06 0.0051 16.7 0.0 10 38 684 712 681 713 0.95 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-202 - 873 1.2e-18 66.6 9.1 5 5 0.0014 4.3 7.3 0.1 13 40 797 824 791 824 0.89 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX1-206 - 873 4.1e-35 119.4 14.7 1 5 2.5e-09 7.5e-06 25.7 0.0 15 55 299 339 297 339 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX1-206 - 873 4.1e-35 119.4 14.7 2 5 1e-09 3.1e-06 26.9 0.3 4 56 468 520 467 521 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-206 - 873 4.1e-35 119.4 14.7 3 5 1.6e-09 4.8e-06 26.3 1.1 8 52 576 620 573 623 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX1-206 - 873 4.1e-35 119.4 14.7 4 5 1.9e-10 5.6e-07 29.3 0.0 8 56 668 716 665 717 0.97 Homeodomain Homeodomain PF00046.29 57 ZHX1-206 - 873 4.1e-35 119.4 14.7 5 5 1.5e-06 0.0044 16.8 0.1 12 52 782 822 779 825 0.92 Homeodomain zf_C2H2_ZHX PF18387.1 53 ZHX1-206 - 873 4.7e-24 83.8 0.4 1 3 0.19 5.6e+02 0.3 0.1 5 29 70 94 67 97 0.87 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-206 - 873 4.7e-24 83.8 0.4 2 3 1.6e-27 4.7e-24 83.8 0.4 2 53 99 150 98 150 0.97 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX1-206 - 873 4.7e-24 83.8 0.4 3 3 2 6e+03 -3.0 0.0 26 35 241 250 240 252 0.82 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 57 ZHX1-206 - 873 5.8e-21 73.7 6.7 1 5 0.0022 6.5 6.3 0.0 29 50 314 335 311 340 0.86 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-206 - 873 5.8e-21 73.7 6.7 2 5 0.0041 12 5.4 0.0 25 49 490 514 479 521 0.83 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-206 - 873 5.8e-21 73.7 6.7 3 5 5.4e-05 0.16 11.5 0.2 21 55 590 624 579 626 0.85 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-206 - 873 5.8e-21 73.7 6.7 4 5 0.0058 17 5.0 0.0 30 48 691 709 681 713 0.92 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX1-206 - 873 5.8e-21 73.7 6.7 5 5 3.3e-15 9.7e-12 44.2 0.3 14 52 785 823 783 826 0.95 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 40 ZHX1-206 - 873 1.2e-18 66.6 9.1 1 5 1.8e-07 0.00053 19.8 0.1 3 38 300 336 299 338 0.90 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-206 - 873 1.2e-18 66.6 9.1 2 5 2.4e-05 0.07 13.0 0.0 6 38 484 516 481 517 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-206 - 873 1.2e-18 66.6 9.1 3 5 0.0002 0.6 10.1 0.5 12 35 594 617 593 621 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-206 - 873 1.2e-18 66.6 9.1 4 5 1.7e-06 0.0051 16.7 0.0 10 38 684 712 681 713 0.95 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX1-206 - 873 1.2e-18 66.6 9.1 5 5 0.0014 4.3 7.3 0.1 13 40 797 824 791 824 0.89 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX2-201 - 837 2.4e-25 88.2 13.0 1 4 2.1e-05 0.032 14.1 0.1 15 55 277 317 272 317 0.92 Homeodomain Homeodomain PF00046.29 57 ZHX2-201 - 837 2.4e-25 88.2 13.0 2 4 9.3e-10 1.4e-06 28.0 0.2 8 56 447 495 444 496 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX2-201 - 837 2.4e-25 88.2 13.0 3 4 1.6e-09 2.4e-06 27.3 0.3 8 52 537 581 534 584 0.96 Homeodomain Homeodomain PF00046.29 57 ZHX2-201 - 837 2.4e-25 88.2 13.0 4 4 1e-08 1.5e-05 24.7 0.3 8 53 636 681 633 685 0.93 Homeodomain zf_C2H2_ZHX PF18387.1 53 ZHX2-201 - 837 5.3e-25 86.8 2.4 1 2 0.03 45 3.8 0.1 4 29 77 102 74 105 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX2-201 - 837 5.3e-25 86.8 2.4 2 2 8.2e-27 1.2e-23 82.5 0.3 2 52 107 157 106 158 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 40 ZHX2-201 - 837 5.4e-15 55.0 7.1 1 4 0.00019 0.28 11.1 0.3 8 38 284 314 279 316 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX2-201 - 837 5.4e-15 55.0 7.1 2 4 5.2e-05 0.078 12.9 0.0 10 40 463 493 458 493 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX2-201 - 837 5.4e-15 55.0 7.1 3 4 1.7e-06 0.0026 17.6 0.0 7 38 550 581 548 582 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX2-201 - 837 5.4e-15 55.0 7.1 4 4 3.1e-05 0.046 13.6 0.1 10 38 652 680 650 681 0.92 Homeobox KN domain Homez PF11569.8 57 ZHX2-201 - 837 8.1e-07 28.4 4.4 1 5 0.16 2.3e+02 1.3 0.0 28 50 291 313 288 317 0.83 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX2-201 - 837 8.1e-07 28.4 4.4 2 5 0.016 25 4.5 0.1 19 49 459 489 450 495 0.80 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX2-201 - 837 8.1e-07 28.4 4.4 3 5 0.00024 0.37 10.3 0.1 26 51 556 581 541 585 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX2-201 - 837 8.1e-07 28.4 4.4 4 5 0.13 2e+02 1.5 0.0 29 48 658 677 635 680 0.86 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX2-201 - 837 8.1e-07 28.4 4.4 5 5 0.0032 4.8 6.7 0.0 16 53 729 766 717 769 0.84 Homeodomain leucine-zipper encoding, Homez # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-201 - 956 1.3e-33 114.6 15.3 1 5 9.1e-08 0.00015 21.6 0.1 14 55 318 359 310 359 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-201 - 956 1.3e-33 114.6 15.3 2 5 5.2e-11 8.6e-08 31.9 0.1 8 56 502 550 498 551 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-201 - 956 1.3e-33 114.6 15.3 3 5 5e-11 8.1e-08 32.0 0.5 8 54 620 666 614 668 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-201 - 956 1.3e-33 114.6 15.3 4 5 9e-07 0.0015 18.4 0.1 8 54 772 818 769 821 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-201 - 956 1.3e-33 114.6 15.3 5 5 1.3e-06 0.0021 17.8 0.1 12 49 847 884 841 886 0.92 Homeodomain Homez PF11569.8 57 ZHX3-201 - 956 1.6e-25 88.3 9.4 1 5 0.85 1.4e+03 -1.1 0.0 35 51 340 356 332 360 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-201 - 956 1.6e-25 88.3 9.4 2 5 4.6e-05 0.075 12.5 0.0 29 50 524 545 521 549 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-201 - 956 1.6e-25 88.3 9.4 3 5 2.6e-06 0.0042 16.5 0.0 10 53 623 666 616 670 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-201 - 956 1.6e-25 88.3 9.4 4 5 0.029 48 3.5 0.0 16 48 781 813 778 819 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-201 - 956 1.6e-25 88.3 9.4 5 5 9.6e-19 1.6e-15 56.3 1.4 14 56 850 892 846 893 0.96 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 53 ZHX3-201 - 956 6.1e-23 80.2 0.2 1 2 5 8.1e+03 -3.4 0.4 5 18 77 90 76 100 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-201 - 956 6.1e-23 80.2 0.2 2 2 3.7e-26 6.1e-23 80.2 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 1 6 2.5 4e+03 -2.2 0.2 4 13 284 293 283 295 0.86 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 2 6 1.9e-06 0.0031 17.4 0.1 8 38 325 356 318 358 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 3 6 6e-05 0.097 12.6 0.0 8 38 516 546 514 547 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 4 6 7.6e-06 0.012 15.5 0.1 7 39 633 665 632 666 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 5 6 0.00013 0.21 11.5 0.0 10 38 788 816 784 817 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-201 - 956 5.7e-18 64.5 13.5 6 6 6.5e-05 0.11 12.5 0.2 13 35 862 884 861 886 0.93 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-204 - 670 1.5e-34 117.6 15.3 1 5 2.7e-08 9.6e-05 22.2 0.1 14 55 19 60 11 60 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-204 - 670 1.5e-34 117.6 15.3 2 5 1.5e-11 5.5e-08 32.5 0.1 8 56 203 251 199 252 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-204 - 670 1.5e-34 117.6 15.3 3 5 1.5e-11 5.2e-08 32.6 0.5 8 54 321 367 315 369 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-204 - 670 1.5e-34 117.6 15.3 4 5 2.6e-07 0.00094 19.0 0.1 8 54 473 519 470 522 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-204 - 670 1.5e-34 117.6 15.3 5 5 3.9e-07 0.0014 18.4 0.1 12 49 548 585 542 587 0.92 Homeodomain Homez PF11569.8 57 ZHX3-204 - 670 3e-26 90.7 9.7 1 5 0.24 8.6e+02 -0.5 0.0 34 51 40 57 32 61 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-204 - 670 3e-26 90.7 9.7 2 5 1.4e-05 0.05 13.1 0.0 29 50 225 246 222 250 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-204 - 670 3e-26 90.7 9.7 3 5 7.5e-07 0.0027 17.1 0.0 10 53 324 367 317 371 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-204 - 670 3e-26 90.7 9.7 4 5 0.0088 31 4.1 0.0 16 48 482 514 479 520 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-204 - 670 3e-26 90.7 9.7 5 5 2.8e-19 1e-15 56.9 1.4 14 56 551 593 547 594 0.96 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 40 ZHX3-204 - 670 4.3e-20 71.3 8.6 1 5 5.7e-07 0.002 18.0 0.1 8 38 26 57 19 59 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-204 - 670 4.3e-20 71.3 8.6 2 5 1.8e-05 0.064 13.2 0.0 8 38 217 247 215 248 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-204 - 670 4.3e-20 71.3 8.6 3 5 2.3e-06 0.0082 16.0 0.1 7 39 334 366 333 367 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-204 - 670 4.3e-20 71.3 8.6 4 5 3.9e-05 0.14 12.1 0.0 10 38 489 517 485 518 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-204 - 670 4.3e-20 71.3 8.6 5 5 2e-05 0.07 13.0 0.2 13 35 563 585 562 587 0.93 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-205 - 956 1.3e-33 114.6 15.3 1 5 9.1e-08 0.00015 21.6 0.1 14 55 318 359 310 359 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-205 - 956 1.3e-33 114.6 15.3 2 5 5.2e-11 8.6e-08 31.9 0.1 8 56 502 550 498 551 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-205 - 956 1.3e-33 114.6 15.3 3 5 5e-11 8.1e-08 32.0 0.5 8 54 620 666 614 668 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-205 - 956 1.3e-33 114.6 15.3 4 5 9e-07 0.0015 18.4 0.1 8 54 772 818 769 821 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-205 - 956 1.3e-33 114.6 15.3 5 5 1.3e-06 0.0021 17.8 0.1 12 49 847 884 841 886 0.92 Homeodomain Homez PF11569.8 57 ZHX3-205 - 956 1.6e-25 88.3 9.4 1 5 0.85 1.4e+03 -1.1 0.0 35 51 340 356 332 360 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-205 - 956 1.6e-25 88.3 9.4 2 5 4.6e-05 0.075 12.5 0.0 29 50 524 545 521 549 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-205 - 956 1.6e-25 88.3 9.4 3 5 2.6e-06 0.0042 16.5 0.0 10 53 623 666 616 670 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-205 - 956 1.6e-25 88.3 9.4 4 5 0.029 48 3.5 0.0 16 48 781 813 778 819 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-205 - 956 1.6e-25 88.3 9.4 5 5 9.6e-19 1.6e-15 56.3 1.4 14 56 850 892 846 893 0.96 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 53 ZHX3-205 - 956 6.1e-23 80.2 0.2 1 2 5 8.1e+03 -3.4 0.4 5 18 77 90 76 100 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-205 - 956 6.1e-23 80.2 0.2 2 2 3.7e-26 6.1e-23 80.2 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 1 6 2.5 4e+03 -2.2 0.2 4 13 284 293 283 295 0.86 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 2 6 1.9e-06 0.0031 17.4 0.1 8 38 325 356 318 358 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 3 6 6e-05 0.097 12.6 0.0 8 38 516 546 514 547 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 4 6 7.6e-06 0.012 15.5 0.1 7 39 633 665 632 666 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 5 6 0.00013 0.21 11.5 0.0 10 38 788 816 784 817 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-205 - 956 5.7e-18 64.5 13.5 6 6 6.5e-05 0.11 12.5 0.2 13 35 862 884 861 886 0.93 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-211 - 969 3.9e-29 100.3 15.6 1 5 7.5e-08 0.00015 21.5 0.1 14 55 318 359 310 359 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-211 - 969 3.9e-29 100.3 15.6 2 5 4.4e-11 8.7e-08 31.9 0.1 8 56 502 550 498 551 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-211 - 969 3.9e-29 100.3 15.6 3 5 4.1e-11 8.2e-08 32.0 0.5 8 54 620 666 614 668 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-211 - 969 3.9e-29 100.3 15.6 4 5 7.5e-07 0.0015 18.3 0.1 8 54 772 818 769 821 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-211 - 969 3.9e-29 100.3 15.6 5 5 0.027 53 3.8 0.1 12 43 847 878 841 881 0.90 Homeodomain zf_C2H2_ZHX PF18387.1 53 ZHX3-211 - 969 6.2e-23 80.2 0.2 1 2 4.1 8.2e+03 -3.4 0.4 5 18 77 90 76 100 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-211 - 969 6.2e-23 80.2 0.2 2 2 3.1e-26 6.2e-23 80.2 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 57 ZHX3-211 - 969 3.4e-17 61.6 10.8 1 5 0.78 1.6e+03 -1.3 0.0 35 50 340 355 332 359 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-211 - 969 3.4e-17 61.6 10.8 2 5 3.8e-05 0.077 12.5 0.0 29 50 524 545 521 549 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-211 - 969 3.4e-17 61.6 10.8 3 5 2.1e-06 0.0042 16.5 0.0 10 53 623 666 616 670 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-211 - 969 3.4e-17 61.6 10.8 4 5 0.024 49 3.5 0.0 16 48 781 813 778 819 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-211 - 969 3.4e-17 61.6 10.8 5 5 9.8e-11 2e-07 30.4 1.9 14 44 850 880 846 891 0.90 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 1 6 2.1 4.1e+03 -2.2 0.2 4 13 284 293 283 295 0.86 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 2 6 1.6e-06 0.0031 17.4 0.1 8 38 325 356 318 358 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 3 6 5e-05 0.099 12.6 0.0 8 38 516 546 514 547 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 4 6 6.3e-06 0.013 15.4 0.1 7 39 633 665 632 666 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 5 6 0.00011 0.22 11.5 0.0 10 38 788 816 784 817 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-211 - 969 2.2e-14 53.1 13.5 6 6 0.26 5.2e+02 0.7 0.2 13 29 862 878 861 891 0.74 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_C2H2_ZHX PF18387.1 53 ZHX3-212 - 315 1.4e-23 82.3 0.2 1 2 0.43 1.9e+03 -1.4 0.5 5 23 77 95 76 101 0.72 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-212 - 315 1.4e-23 82.3 0.2 2 2 3e-27 1.4e-23 82.3 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-214 - 956 1.3e-33 114.6 15.3 1 5 9.1e-08 0.00015 21.6 0.1 14 55 318 359 310 359 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-214 - 956 1.3e-33 114.6 15.3 2 5 5.2e-11 8.6e-08 31.9 0.1 8 56 502 550 498 551 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-214 - 956 1.3e-33 114.6 15.3 3 5 5e-11 8.1e-08 32.0 0.5 8 54 620 666 614 668 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-214 - 956 1.3e-33 114.6 15.3 4 5 9e-07 0.0015 18.4 0.1 8 54 772 818 769 821 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-214 - 956 1.3e-33 114.6 15.3 5 5 1.3e-06 0.0021 17.8 0.1 12 49 847 884 841 886 0.92 Homeodomain Homez PF11569.8 57 ZHX3-214 - 956 1.6e-25 88.3 9.4 1 5 0.85 1.4e+03 -1.1 0.0 35 51 340 356 332 360 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-214 - 956 1.6e-25 88.3 9.4 2 5 4.6e-05 0.075 12.5 0.0 29 50 524 545 521 549 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-214 - 956 1.6e-25 88.3 9.4 3 5 2.6e-06 0.0042 16.5 0.0 10 53 623 666 616 670 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-214 - 956 1.6e-25 88.3 9.4 4 5 0.029 48 3.5 0.0 16 48 781 813 778 819 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-214 - 956 1.6e-25 88.3 9.4 5 5 9.6e-19 1.6e-15 56.3 1.4 14 56 850 892 846 893 0.96 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 53 ZHX3-214 - 956 6.1e-23 80.2 0.2 1 2 5 8.1e+03 -3.4 0.4 5 18 77 90 76 100 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-214 - 956 6.1e-23 80.2 0.2 2 2 3.7e-26 6.1e-23 80.2 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 1 6 2.5 4e+03 -2.2 0.2 4 13 284 293 283 295 0.86 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 2 6 1.9e-06 0.0031 17.4 0.1 8 38 325 356 318 358 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 3 6 6e-05 0.097 12.6 0.0 8 38 516 546 514 547 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 4 6 7.6e-06 0.012 15.5 0.1 7 39 633 665 632 666 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 5 6 0.00013 0.21 11.5 0.0 10 38 788 816 784 817 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-214 - 956 5.7e-18 64.5 13.5 6 6 6.5e-05 0.11 12.5 0.2 13 35 862 884 861 886 0.93 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZHX3-217 - 956 1.3e-33 114.6 15.3 1 5 9.1e-08 0.00015 21.6 0.1 14 55 318 359 310 359 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-217 - 956 1.3e-33 114.6 15.3 2 5 5.2e-11 8.6e-08 31.9 0.1 8 56 502 550 498 551 0.94 Homeodomain Homeodomain PF00046.29 57 ZHX3-217 - 956 1.3e-33 114.6 15.3 3 5 5e-11 8.1e-08 32.0 0.5 8 54 620 666 614 668 0.95 Homeodomain Homeodomain PF00046.29 57 ZHX3-217 - 956 1.3e-33 114.6 15.3 4 5 9e-07 0.0015 18.4 0.1 8 54 772 818 769 821 0.93 Homeodomain Homeodomain PF00046.29 57 ZHX3-217 - 956 1.3e-33 114.6 15.3 5 5 1.3e-06 0.0021 17.8 0.1 12 49 847 884 841 886 0.92 Homeodomain Homez PF11569.8 57 ZHX3-217 - 956 1.6e-25 88.3 9.4 1 5 0.85 1.4e+03 -1.1 0.0 35 51 340 356 332 360 0.73 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-217 - 956 1.6e-25 88.3 9.4 2 5 4.6e-05 0.075 12.5 0.0 29 50 524 545 521 549 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-217 - 956 1.6e-25 88.3 9.4 3 5 2.6e-06 0.0042 16.5 0.0 10 53 623 666 616 670 0.88 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-217 - 956 1.6e-25 88.3 9.4 4 5 0.029 48 3.5 0.0 16 48 781 813 778 819 0.87 Homeodomain leucine-zipper encoding, Homez Homez PF11569.8 57 ZHX3-217 - 956 1.6e-25 88.3 9.4 5 5 9.6e-19 1.6e-15 56.3 1.4 14 56 850 892 846 893 0.96 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 53 ZHX3-217 - 956 6.1e-23 80.2 0.2 1 2 5 8.1e+03 -3.4 0.4 5 18 77 90 76 100 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-217 - 956 6.1e-23 80.2 0.2 2 2 3.7e-26 6.1e-23 80.2 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 1 6 2.5 4e+03 -2.2 0.2 4 13 284 293 283 295 0.86 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 2 6 1.9e-06 0.0031 17.4 0.1 8 38 325 356 318 358 0.87 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 3 6 6e-05 0.097 12.6 0.0 8 38 516 546 514 547 0.91 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 4 6 7.6e-06 0.012 15.5 0.1 7 39 633 665 632 666 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 5 6 0.00013 0.21 11.5 0.0 10 38 788 816 784 817 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZHX3-217 - 956 5.7e-18 64.5 13.5 6 6 6.5e-05 0.11 12.5 0.2 13 35 862 884 861 886 0.93 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_C2H2_ZHX PF18387.1 53 ZHX3-218 - 315 1.4e-23 82.3 0.2 1 2 0.43 1.9e+03 -1.4 0.5 5 23 77 95 76 101 0.72 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZHX3-218 - 315 1.4e-23 82.3 0.2 2 2 3e-27 1.4e-23 82.3 0.2 1 51 105 155 105 157 0.97 Zinc-fingers and homeoboxes C2H2 finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 1 10 0.00014 0.077 13.5 0.2 10 25 317 332 317 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 2 10 3e-11 1.6e-08 34.6 0.1 1 25 336 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 3 10 7.4e-07 0.0004 20.7 0.8 2 25 365 388 364 389 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 4 10 8.3e-11 4.5e-08 33.2 0.1 2 25 393 416 392 417 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 5 10 9.1e-10 4.9e-07 29.9 0.1 2 26 421 445 420 445 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 6 10 6.3e-11 3.4e-08 33.5 0.8 4 25 451 472 448 473 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 7 10 9.7e-10 5.3e-07 29.8 0.7 4 25 479 500 476 501 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 8 10 1.2e-10 6.4e-08 32.7 0.3 2 25 505 528 504 528 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 9 10 3.1e-11 1.7e-08 34.5 0.0 2 24 533 555 532 557 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-201 - 578 5.3e-74 241.6 44.5 10 10 0.022 12 6.5 0.1 2 13 561 572 560 573 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 1 9 1.7e-08 9.2e-06 25.8 0.5 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 2 9 1.3e-07 6.9e-05 23.1 0.2 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 3 9 2.7e-07 0.00015 22.0 0.8 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 4 9 7.9e-08 4.3e-05 23.7 0.1 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 5 9 2.1e-08 1.2e-05 25.5 1.6 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 6 9 7.3e-09 3.9e-06 27.0 1.7 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 7 9 8.8e-09 4.8e-06 26.7 0.2 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 8 9 3e-07 0.00016 21.9 0.1 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-201 - 578 9.4e-59 192.7 49.5 9 9 2.5e-09 1.3e-06 28.5 0.3 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN8-201 - 578 1.9e-37 127.0 5.6 1 1 8.8e-40 4.8e-37 125.7 5.6 1 86 47 132 47 134 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 1 9 2e-06 0.0011 19.6 0.7 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 2 9 3.3e-05 0.018 15.8 0.2 1 23 350 372 350 373 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 3 9 0.00029 0.16 12.9 0.6 1 23 378 400 378 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 4 9 7.3e-05 0.04 14.8 0.1 1 23 406 428 406 429 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 5 9 0.00027 0.15 13.0 1.4 1 23 434 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 6 9 5.7e-06 0.0031 18.2 1.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 7 9 2.1e-05 0.011 16.5 0.2 1 23 490 512 490 513 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 8 9 9.7e-06 0.0052 17.5 0.1 1 23 518 540 518 541 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-201 - 578 1.4e-33 112.6 48.9 9 9 3.1e-05 0.017 15.9 0.3 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 1 9 9.5e-05 0.052 13.6 0.4 1 11 321 331 321 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 2 9 0.00061 0.33 11.0 0.4 2 20 350 368 350 372 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 3 9 0.0018 0.99 9.5 0.5 2 20 378 396 377 402 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 4 9 0.0073 4 7.6 0.1 2 12 406 416 406 429 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 5 9 0.00091 0.49 10.5 2.0 2 22 434 454 434 458 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 6 9 3.8e-07 0.00021 21.2 1.5 2 24 462 484 462 487 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 7 9 0.0019 1 9.5 0.4 2 22 490 510 490 514 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 8 9 0.00011 0.058 13.4 0.3 2 24 518 540 518 543 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-201 - 578 6.5e-20 70.6 52.2 9 9 0.012 6.6 6.8 0.1 2 11 546 555 546 569 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 1 7 0.0052 2.8 8.1 2.1 7 34 323 357 321 362 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 2 7 0.065 35 4.6 0.1 6 16 350 360 348 371 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 3 7 2.8e-06 0.0015 18.6 1.0 6 35 378 414 375 418 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 4 7 1.6e-05 0.0086 16.2 3.7 6 38 434 473 433 475 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 5 7 2.5e-05 0.014 15.5 3.6 6 34 490 525 489 528 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 6 7 5.4e-05 0.029 14.5 3.3 6 34 518 553 517 559 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-201 - 578 6.9e-13 48.5 37.3 7 7 0.018 10 6.4 0.4 6 17 546 557 545 566 0.82 Zinc ribbon domain KRAB PF01352.27 42 ZKSCAN8-201 - 578 3.9e-11 42.4 0.0 1 1 1.5e-13 8.3e-11 41.4 0.0 4 42 222 259 221 259 0.97 KRAB box zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 1 9 0.0074 4 7.1 0.1 3 15 322 334 320 337 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 2 9 0.0065 3.5 7.3 0.0 3 24 350 372 348 372 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 3 9 0.023 12 5.5 0.1 3 14 378 389 376 393 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 4 9 0.022 12 5.6 0.1 3 15 406 418 404 421 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 5 9 0.02 11 5.7 0.1 3 15 434 446 432 453 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 6 9 0.0089 4.8 6.9 0.2 3 13 462 472 460 477 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 7 9 0.017 9.4 5.9 0.1 3 21 490 509 488 509 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 8 9 0.03 16 5.1 0.0 3 13 518 528 516 537 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-201 - 578 2.2e-10 39.9 27.9 9 9 0.047 25 4.5 0.1 3 13 546 556 544 565 0.80 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 1 9 0.00029 0.16 11.8 0.3 5 26 322 343 319 344 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 2 9 0.056 30 4.5 0.1 5 23 350 368 347 372 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 3 9 0.13 69 3.3 0.7 6 26 379 399 377 400 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 4 9 0.0041 2.2 8.1 0.3 5 26 406 427 403 428 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 5 9 0.15 81 3.1 0.4 6 26 435 455 433 456 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 6 9 2.4 1.3e+03 -0.7 0.1 7 14 464 471 461 477 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 7 9 0.0023 1.2 8.9 0.1 5 26 490 511 487 512 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 8 9 0.0071 3.9 7.3 0.1 5 26 518 539 516 540 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-201 - 578 8.7e-09 35.0 40.3 9 9 0.00018 0.099 12.4 0.4 5 26 546 567 543 568 0.94 zinc-finger C2H2-type XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 1 9 0.00042 0.23 11.5 0.4 2 14 322 334 321 337 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 2 9 0.89 4.8e+02 0.9 0.0 3 11 351 359 349 368 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 3 9 0.015 8 6.6 0.2 3 12 379 388 377 390 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 4 9 0.03 16 5.6 0.2 3 14 407 418 405 419 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 5 9 0.007 3.8 7.6 0.2 3 14 435 446 433 449 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 6 9 0.002 1.1 9.4 0.2 3 14 463 474 461 477 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 7 9 0.055 30 4.8 0.1 3 12 491 500 489 507 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 8 9 0.017 9.4 6.4 0.2 3 11 519 527 517 529 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-201 - 578 2.6e-08 33.8 40.0 9 9 0.038 21 5.3 0.0 3 12 547 556 545 563 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 1 8 0.042 23 5.4 0.0 2 21 322 341 321 342 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 2 8 0.65 3.5e+02 1.6 0.1 4 21 352 369 349 370 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 3 8 0.73 4e+02 1.5 0.1 4 12 380 388 377 398 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 4 8 0.019 11 6.5 0.1 2 22 434 454 433 454 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 5 8 9.2e-05 0.05 13.9 0.1 2 24 462 484 461 484 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 6 8 0.98 5.3e+02 1.1 0.1 2 21 490 509 489 510 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 7 8 0.0021 1.1 9.6 0.0 2 22 518 538 517 538 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-201 - 578 3e-07 30.5 24.9 8 8 0.27 1.5e+02 2.9 0.1 4 22 548 566 545 566 0.88 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZKSCAN8-201 - 578 3.8e-07 30.8 28.2 1 5 1.4 7.5e+02 1.0 0.4 64 76 318 332 287 336 0.69 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-201 - 578 3.8e-07 30.8 28.2 2 5 6.1e-05 0.033 14.9 1.1 27 78 339 390 336 392 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-201 - 578 3.8e-07 30.8 28.2 3 5 0.0018 1 10.2 0.5 31 78 399 446 393 452 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-201 - 578 3.8e-07 30.8 28.2 4 5 0.00098 0.53 11.1 1.0 31 78 455 502 449 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-201 - 578 3.8e-07 30.8 28.2 5 5 0.00095 0.52 11.1 0.5 30 75 510 555 505 561 0.86 zinc-ribbon family C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 1 9 0.0036 1.9 8.4 2.3 9 36 319 357 315 359 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 2 9 0.00044 0.24 11.3 1.2 2 37 340 386 339 390 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 3 9 0.047 25 4.8 3.0 10 36 376 413 368 415 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 4 9 0.0097 5.3 7.0 1.7 5 37 400 442 396 447 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 5 9 0.029 16 5.5 1.0 9 36 431 469 424 471 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 6 9 0.00039 0.21 11.5 0.3 5 38 456 499 448 502 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 7 9 0.005 2.7 8.0 1.1 5 36 484 525 476 527 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 8 9 0.0027 1.5 8.8 1.1 5 36 512 553 508 558 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-201 - 578 8.7e-07 28.7 29.1 9 9 0.18 1e+02 2.9 0.1 8 21 542 555 534 567 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.21 68 ZKSCAN8-201 - 578 1.5e-06 28.3 35.0 1 4 0.014 7.5 6.8 0.7 23 37 319 333 315 340 0.85 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-201 - 578 1.5e-06 28.3 35.0 2 4 7.9e-06 0.0043 17.2 2.2 10 38 350 390 339 401 0.81 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-201 - 578 1.5e-06 28.3 35.0 3 4 0.0026 1.4 9.1 4.6 10 65 406 470 396 473 0.68 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-201 - 578 1.5e-06 28.3 35.0 4 4 0.28 1.5e+02 2.6 10.4 10 37 490 546 454 578 0.67 FYVE zinc finger zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 1 7 1.2 6.7e+02 0.7 0.0 64 88 319 343 307 349 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 2 7 0.00098 0.53 10.6 1.7 34 87 348 398 326 406 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 3 7 0.00087 0.47 10.8 2.3 15 85 355 424 346 433 0.59 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 4 7 0.03 16 5.8 0.7 36 86 406 453 395 460 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 5 7 0.0092 5 7.5 0.8 41 85 437 480 428 489 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 6 7 7.1e-05 0.039 14.3 0.2 30 89 483 540 476 545 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-201 - 578 9.3e-06 25.9 21.4 7 7 0.0019 1 9.7 0.2 41 91 521 570 513 577 0.82 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 1 10 0.00014 0.077 13.5 0.2 10 25 317 332 317 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 2 10 3e-11 1.6e-08 34.6 0.1 1 25 336 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 3 10 7.4e-07 0.0004 20.7 0.8 2 25 365 388 364 389 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 4 10 8.3e-11 4.5e-08 33.2 0.1 2 25 393 416 392 417 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 5 10 9.1e-10 4.9e-07 29.9 0.1 2 26 421 445 420 445 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 6 10 6.3e-11 3.4e-08 33.5 0.8 4 25 451 472 448 473 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 7 10 9.7e-10 5.3e-07 29.8 0.7 4 25 479 500 476 501 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 8 10 1.2e-10 6.4e-08 32.7 0.3 2 25 505 528 504 528 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 9 10 3.1e-11 1.7e-08 34.5 0.0 2 24 533 555 532 557 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-202 - 578 5.3e-74 241.6 44.5 10 10 0.022 12 6.5 0.1 2 13 561 572 560 573 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 1 9 1.7e-08 9.2e-06 25.8 0.5 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 2 9 1.3e-07 6.9e-05 23.1 0.2 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 3 9 2.7e-07 0.00015 22.0 0.8 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 4 9 7.9e-08 4.3e-05 23.7 0.1 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 5 9 2.1e-08 1.2e-05 25.5 1.6 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 6 9 7.3e-09 3.9e-06 27.0 1.7 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 7 9 8.8e-09 4.8e-06 26.7 0.2 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 8 9 3e-07 0.00016 21.9 0.1 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-202 - 578 9.4e-59 192.7 49.5 9 9 2.5e-09 1.3e-06 28.5 0.3 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN8-202 - 578 1.9e-37 127.0 5.6 1 1 8.8e-40 4.8e-37 125.7 5.6 1 86 47 132 47 134 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 1 9 2e-06 0.0011 19.6 0.7 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 2 9 3.3e-05 0.018 15.8 0.2 1 23 350 372 350 373 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 3 9 0.00029 0.16 12.9 0.6 1 23 378 400 378 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 4 9 7.3e-05 0.04 14.8 0.1 1 23 406 428 406 429 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 5 9 0.00027 0.15 13.0 1.4 1 23 434 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 6 9 5.7e-06 0.0031 18.2 1.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 7 9 2.1e-05 0.011 16.5 0.2 1 23 490 512 490 513 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 8 9 9.7e-06 0.0052 17.5 0.1 1 23 518 540 518 541 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-202 - 578 1.4e-33 112.6 48.9 9 9 3.1e-05 0.017 15.9 0.3 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 1 9 9.5e-05 0.052 13.6 0.4 1 11 321 331 321 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 2 9 0.00061 0.33 11.0 0.4 2 20 350 368 350 372 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 3 9 0.0018 0.99 9.5 0.5 2 20 378 396 377 402 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 4 9 0.0073 4 7.6 0.1 2 12 406 416 406 429 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 5 9 0.00091 0.49 10.5 2.0 2 22 434 454 434 458 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 6 9 3.8e-07 0.00021 21.2 1.5 2 24 462 484 462 487 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 7 9 0.0019 1 9.5 0.4 2 22 490 510 490 514 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 8 9 0.00011 0.058 13.4 0.3 2 24 518 540 518 543 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-202 - 578 6.5e-20 70.6 52.2 9 9 0.012 6.6 6.8 0.1 2 11 546 555 546 569 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 1 7 0.0052 2.8 8.1 2.1 7 34 323 357 321 362 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 2 7 0.065 35 4.6 0.1 6 16 350 360 348 371 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 3 7 2.8e-06 0.0015 18.6 1.0 6 35 378 414 375 418 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 4 7 1.6e-05 0.0086 16.2 3.7 6 38 434 473 433 475 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 5 7 2.5e-05 0.014 15.5 3.6 6 34 490 525 489 528 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 6 7 5.4e-05 0.029 14.5 3.3 6 34 518 553 517 559 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-202 - 578 6.9e-13 48.5 37.3 7 7 0.018 10 6.4 0.4 6 17 546 557 545 566 0.82 Zinc ribbon domain KRAB PF01352.27 42 ZKSCAN8-202 - 578 3.9e-11 42.4 0.0 1 1 1.5e-13 8.3e-11 41.4 0.0 4 42 222 259 221 259 0.97 KRAB box zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 1 9 0.0074 4 7.1 0.1 3 15 322 334 320 337 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 2 9 0.0065 3.5 7.3 0.0 3 24 350 372 348 372 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 3 9 0.023 12 5.5 0.1 3 14 378 389 376 393 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 4 9 0.022 12 5.6 0.1 3 15 406 418 404 421 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 5 9 0.02 11 5.7 0.1 3 15 434 446 432 453 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 6 9 0.0089 4.8 6.9 0.2 3 13 462 472 460 477 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 7 9 0.017 9.4 5.9 0.1 3 21 490 509 488 509 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 8 9 0.03 16 5.1 0.0 3 13 518 528 516 537 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-202 - 578 2.2e-10 39.9 27.9 9 9 0.047 25 4.5 0.1 3 13 546 556 544 565 0.80 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 1 9 0.00029 0.16 11.8 0.3 5 26 322 343 319 344 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 2 9 0.056 30 4.5 0.1 5 23 350 368 347 372 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 3 9 0.13 69 3.3 0.7 6 26 379 399 377 400 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 4 9 0.0041 2.2 8.1 0.3 5 26 406 427 403 428 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 5 9 0.15 81 3.1 0.4 6 26 435 455 433 456 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 6 9 2.4 1.3e+03 -0.7 0.1 7 14 464 471 461 477 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 7 9 0.0023 1.2 8.9 0.1 5 26 490 511 487 512 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 8 9 0.0071 3.9 7.3 0.1 5 26 518 539 516 540 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-202 - 578 8.7e-09 35.0 40.3 9 9 0.00018 0.099 12.4 0.4 5 26 546 567 543 568 0.94 zinc-finger C2H2-type XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 1 9 0.00042 0.23 11.5 0.4 2 14 322 334 321 337 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 2 9 0.89 4.8e+02 0.9 0.0 3 11 351 359 349 368 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 3 9 0.015 8 6.6 0.2 3 12 379 388 377 390 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 4 9 0.03 16 5.6 0.2 3 14 407 418 405 419 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 5 9 0.007 3.8 7.6 0.2 3 14 435 446 433 449 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 6 9 0.002 1.1 9.4 0.2 3 14 463 474 461 477 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 7 9 0.055 30 4.8 0.1 3 12 491 500 489 507 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 8 9 0.017 9.4 6.4 0.2 3 11 519 527 517 529 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-202 - 578 2.6e-08 33.8 40.0 9 9 0.038 21 5.3 0.0 3 12 547 556 545 563 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 1 8 0.042 23 5.4 0.0 2 21 322 341 321 342 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 2 8 0.65 3.5e+02 1.6 0.1 4 21 352 369 349 370 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 3 8 0.73 4e+02 1.5 0.1 4 12 380 388 377 398 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 4 8 0.019 11 6.5 0.1 2 22 434 454 433 454 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 5 8 9.2e-05 0.05 13.9 0.1 2 24 462 484 461 484 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 6 8 0.98 5.3e+02 1.1 0.1 2 21 490 509 489 510 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 7 8 0.0021 1.1 9.6 0.0 2 22 518 538 517 538 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-202 - 578 3e-07 30.5 24.9 8 8 0.27 1.5e+02 2.9 0.1 4 22 548 566 545 566 0.88 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZKSCAN8-202 - 578 3.8e-07 30.8 28.2 1 5 1.4 7.5e+02 1.0 0.4 64 76 318 332 287 336 0.69 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-202 - 578 3.8e-07 30.8 28.2 2 5 6.1e-05 0.033 14.9 1.1 27 78 339 390 336 392 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-202 - 578 3.8e-07 30.8 28.2 3 5 0.0018 1 10.2 0.5 31 78 399 446 393 452 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-202 - 578 3.8e-07 30.8 28.2 4 5 0.00098 0.53 11.1 1.0 31 78 455 502 449 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-202 - 578 3.8e-07 30.8 28.2 5 5 0.00095 0.52 11.1 0.5 30 75 510 555 505 561 0.86 zinc-ribbon family C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 1 9 0.0036 1.9 8.4 2.3 9 36 319 357 315 359 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 2 9 0.00044 0.24 11.3 1.2 2 37 340 386 339 390 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 3 9 0.047 25 4.8 3.0 10 36 376 413 368 415 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 4 9 0.0097 5.3 7.0 1.7 5 37 400 442 396 447 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 5 9 0.029 16 5.5 1.0 9 36 431 469 424 471 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 6 9 0.00039 0.21 11.5 0.3 5 38 456 499 448 502 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 7 9 0.005 2.7 8.0 1.1 5 36 484 525 476 527 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 8 9 0.0027 1.5 8.8 1.1 5 36 512 553 508 558 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-202 - 578 8.7e-07 28.7 29.1 9 9 0.18 1e+02 2.9 0.1 8 21 542 555 534 567 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.21 68 ZKSCAN8-202 - 578 1.5e-06 28.3 35.0 1 4 0.014 7.5 6.8 0.7 23 37 319 333 315 340 0.85 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-202 - 578 1.5e-06 28.3 35.0 2 4 7.9e-06 0.0043 17.2 2.2 10 38 350 390 339 401 0.81 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-202 - 578 1.5e-06 28.3 35.0 3 4 0.0026 1.4 9.1 4.6 10 65 406 470 396 473 0.68 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-202 - 578 1.5e-06 28.3 35.0 4 4 0.28 1.5e+02 2.6 10.4 10 37 490 546 454 578 0.67 FYVE zinc finger zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 1 7 1.2 6.7e+02 0.7 0.0 64 88 319 343 307 349 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 2 7 0.00098 0.53 10.6 1.7 34 87 348 398 326 406 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 3 7 0.00087 0.47 10.8 2.3 15 85 355 424 346 433 0.59 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 4 7 0.03 16 5.8 0.7 36 86 406 453 395 460 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 5 7 0.0092 5 7.5 0.8 41 85 437 480 428 489 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 6 7 7.1e-05 0.039 14.3 0.2 30 89 483 540 476 545 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-202 - 578 9.3e-06 25.9 21.4 7 7 0.0019 1 9.7 0.2 41 91 521 570 513 577 0.82 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZKSCAN8-203 - 158 2.6e-38 129.7 5.6 1 1 4.1e-42 3.7e-38 129.2 5.6 1 86 47 132 47 134 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 1 10 0.0001 0.049 14.1 0.2 10 25 130 145 130 146 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 2 10 2.1e-11 1e-08 35.2 0.1 1 25 149 173 149 174 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 3 10 5.3e-07 0.00025 21.3 0.8 1 25 177 201 177 202 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 4 10 6e-11 2.8e-08 33.8 0.1 2 25 206 229 205 230 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 5 10 6.5e-10 3.1e-07 30.5 0.1 2 26 234 258 233 258 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 6 10 4.5e-11 2.1e-08 34.2 0.8 4 25 264 285 261 286 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 7 10 7e-10 3.3e-07 30.4 0.7 4 25 292 313 289 314 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 8 10 8.5e-11 4e-08 33.3 0.3 2 25 318 341 317 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 9 10 2.2e-11 1.1e-08 35.2 0.0 2 24 346 368 345 370 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN8-204 - 391 5.5e-76 247.9 44.5 10 10 0.016 7.6 7.2 0.1 2 13 374 385 373 386 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 1 9 1.2e-08 5.8e-06 26.5 0.5 1 23 135 157 135 157 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 2 9 9.1e-08 4.3e-05 23.7 0.2 1 23 163 185 163 185 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 3 9 2e-07 9.2e-05 22.7 0.8 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 4 9 5.7e-08 2.7e-05 24.4 0.1 1 23 219 241 219 241 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 5 9 1.5e-08 7.2e-06 26.2 1.6 1 23 247 269 247 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 6 9 5.2e-09 2.5e-06 27.6 1.7 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 7 9 6.3e-09 3e-06 27.4 0.2 1 23 303 325 303 325 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 8 9 2.1e-07 0.0001 22.6 0.1 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN8-204 - 391 1.6e-60 198.3 49.5 9 9 1.8e-09 8.4e-07 29.1 0.3 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 1 9 1.4e-06 0.00068 20.3 0.7 1 23 135 157 135 158 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 2 9 2.3e-05 0.011 16.5 0.2 1 23 163 185 163 186 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 3 9 0.00021 0.099 13.5 0.6 1 23 191 213 191 214 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 4 9 5.2e-05 0.025 15.4 0.1 1 23 219 241 219 242 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 5 9 0.00019 0.09 13.7 1.4 1 23 247 269 247 270 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 6 9 4e-06 0.0019 18.9 1.2 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 7 9 1.5e-05 0.007 17.1 0.2 1 23 303 325 303 326 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 8 9 6.9e-06 0.0032 18.2 0.1 1 23 331 353 331 354 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN8-204 - 391 2.4e-35 118.2 48.9 9 9 2.2e-05 0.01 16.6 0.3 1 23 359 381 359 382 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 1 9 7.1e-05 0.033 14.2 0.4 1 11 134 144 134 146 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 2 9 0.00045 0.21 11.6 0.4 2 20 163 181 163 185 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 3 9 0.0013 0.62 10.1 0.5 2 20 191 209 190 215 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 4 9 0.0051 2.4 8.3 0.1 2 12 219 229 219 243 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 5 9 0.00066 0.31 11.1 2.0 2 22 247 267 247 271 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 6 9 2.7e-07 0.00013 21.9 1.5 2 24 275 297 275 300 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 7 9 0.0013 0.63 10.1 0.4 2 22 303 323 303 327 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 8 9 7.6e-05 0.036 14.1 0.3 2 24 331 353 331 356 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN8-204 - 391 8.4e-22 76.7 51.8 9 9 0.0085 4 7.5 0.1 2 11 359 368 359 383 0.85 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 1 8 0.0081 3.8 7.7 3.2 7 34 136 170 134 175 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 2 8 0.048 22 5.2 0.2 6 16 163 173 162 185 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 3 8 3.1e-06 0.0014 18.7 1.7 6 35 191 227 188 231 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 4 8 8e-05 0.038 14.1 3.8 6 34 219 254 217 258 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 5 8 1.8e-05 0.0083 16.2 4.4 6 38 247 286 246 288 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 6 8 2.2e-05 0.01 15.9 3.9 6 34 303 338 302 341 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 7 8 3.3e-05 0.015 15.4 3.1 6 34 331 366 330 372 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN8-204 - 391 3.3e-13 49.5 40.2 8 8 0.012 5.8 7.1 0.3 6 17 359 370 358 380 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 1 9 0.0055 2.6 7.7 0.1 3 15 135 147 133 150 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 2 9 0.0047 2.2 7.9 0.0 3 24 163 185 161 185 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 3 9 0.017 7.9 6.2 0.1 3 14 191 202 189 206 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 4 9 0.016 7.4 6.3 0.1 3 15 219 231 217 235 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 5 9 0.015 7 6.3 0.1 3 15 247 259 245 266 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 6 9 0.0064 3 7.5 0.1 3 13 275 285 273 291 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 7 9 0.013 5.9 6.6 0.1 3 21 303 322 301 322 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 8 9 0.022 11 5.8 0.0 3 13 331 341 329 350 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZKSCAN8-204 - 391 4e-12 45.5 27.6 9 9 0.034 16 5.2 0.1 3 13 359 369 357 378 0.80 Ubiquitin-Binding Zinc Finger KRAB PF01352.27 42 ZKSCAN8-204 - 391 2.9e-11 42.8 0.0 1 1 1.1e-13 5e-11 42.1 0.0 4 42 35 72 34 72 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 1 9 0.00021 0.099 12.4 0.3 5 26 135 156 132 157 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 2 9 0.041 19 5.1 0.1 5 23 163 181 160 185 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 3 9 0.093 44 4.0 0.7 6 26 192 212 190 213 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 4 9 0.003 1.4 8.7 0.3 5 26 219 240 216 241 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 5 9 0.11 52 3.7 0.4 6 26 248 268 246 269 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 6 9 1.8 8.4e+02 -0.1 0.1 7 14 277 284 274 290 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 7 9 0.0017 0.79 9.5 0.1 5 26 303 324 300 325 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 8 9 0.0051 2.4 8.0 0.1 5 26 331 352 329 353 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN8-204 - 391 1.8e-10 40.4 40.3 9 9 0.00013 0.062 13.1 0.4 5 26 359 380 356 381 0.94 zinc-finger C2H2-type XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 1 10 8.7 4.1e+03 -2.1 0.7 26 31 55 60 55 61 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 2 10 0.00031 0.15 12.2 0.4 2 14 135 147 134 150 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 3 10 0.66 3.1e+02 1.5 0.0 3 11 164 172 162 181 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 4 10 0.011 5.1 7.2 0.2 3 12 192 201 190 203 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 5 10 0.022 11 6.2 0.2 3 14 220 231 218 232 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 6 10 0.0052 2.4 8.2 0.2 3 14 248 259 246 262 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 7 10 0.0015 0.7 10.0 0.2 3 14 276 287 274 290 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 8 10 0.041 19 5.4 0.1 3 12 304 313 302 320 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 9 10 0.013 6.1 7.0 0.2 3 11 332 340 330 342 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN8-204 - 391 9.3e-10 38.4 41.0 10 10 0.028 13 5.9 0.0 3 12 360 369 358 376 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 1 8 0.031 14 6.1 0.0 2 21 135 154 134 155 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 2 8 0.47 2.2e+02 2.3 0.1 4 21 165 182 162 183 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 3 8 0.54 2.5e+02 2.1 0.1 4 12 193 201 190 211 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 4 8 0.014 6.6 7.1 0.1 2 22 247 267 246 267 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 5 8 6.7e-05 0.031 14.5 0.1 2 24 275 297 274 297 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 6 8 0.72 3.4e+02 1.7 0.1 2 21 303 322 302 323 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 7 8 0.0015 0.7 10.2 0.0 2 22 331 351 330 351 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN8-204 - 391 8.6e-09 35.5 24.9 8 8 0.19 92 3.5 0.1 4 22 361 379 358 379 0.89 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZKSCAN8-204 - 391 4.3e-08 33.8 28.5 1 5 1.1 5.1e+02 1.5 0.4 63 76 132 145 109 150 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-204 - 391 4.3e-08 33.8 28.5 2 5 4.1e-05 0.019 15.7 1.1 27 78 152 203 149 205 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-204 - 391 4.3e-08 33.8 28.5 3 5 0.0012 0.58 10.9 0.5 31 78 212 259 206 265 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-204 - 391 4.3e-08 33.8 28.5 4 5 0.00066 0.31 11.8 1.0 31 78 268 315 262 318 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZKSCAN8-204 - 391 4.3e-08 33.8 28.5 5 5 0.00064 0.3 11.8 0.5 30 75 323 368 318 374 0.86 zinc-ribbon family FYVE PF01363.21 68 ZKSCAN8-204 - 391 1.5e-07 31.4 35.4 1 4 0.0092 4.3 7.5 0.7 23 37 132 146 125 155 0.86 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-204 - 391 1.5e-07 31.4 35.4 2 4 6.8e-06 0.0032 17.6 2.4 10 38 163 203 152 213 0.81 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-204 - 391 1.5e-07 31.4 35.4 3 4 0.018 8.4 6.6 9.8 10 64 219 310 210 314 0.59 FYVE zinc finger FYVE PF01363.21 68 ZKSCAN8-204 - 391 1.5e-07 31.4 35.4 4 4 0.2 92 3.3 10.6 10 37 303 359 266 391 0.67 FYVE zinc finger C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 1 9 0.003 1.4 8.8 2.7 9 36 132 170 126 172 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 2 9 0.00037 0.17 11.8 1.5 2 37 153 199 152 203 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 3 9 0.036 17 5.4 3.2 10 36 189 226 180 228 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 4 9 0.0085 4 7.4 2.0 5 37 213 255 209 259 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 5 9 0.021 10 6.1 1.1 9 36 244 282 237 284 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 6 9 0.00027 0.13 12.2 0.4 5 38 269 312 261 317 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 7 9 0.0043 2 8.3 1.4 5 36 297 338 289 340 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 8 9 0.0023 1.1 9.2 1.5 5 36 325 366 319 371 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZKSCAN8-204 - 391 2e-07 30.8 31.3 9 9 0.13 61 3.6 0.2 9 21 356 368 349 381 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 1 7 0.027 13 6.2 0.4 35 86 134 182 111 186 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 2 7 0.00063 0.3 11.4 1.7 34 87 161 211 139 219 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 3 7 0.00079 0.37 11.1 2.3 16 86 169 238 164 246 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 4 7 0.017 8.1 6.8 0.3 37 87 220 267 212 274 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 5 7 0.0059 2.8 8.3 0.5 41 85 250 293 242 300 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 6 7 3.5e-05 0.017 15.4 0.3 29 89 295 353 287 358 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZKSCAN8-204 - 391 8.7e-07 29.2 21.4 7 7 0.0016 0.74 10.1 0.4 41 91 334 383 328 390 0.83 C2H2-type zinc ribbon zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 1 8 1.1 5.4e+02 1.2 0.2 2 19 136 153 135 158 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 2 8 0.00029 0.14 12.6 0.5 1 20 163 182 163 185 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 3 8 0.41 1.9e+02 2.6 0.3 1 20 191 210 191 214 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 4 8 0.028 13 6.3 1.2 1 21 247 267 247 270 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 5 8 0.00061 0.29 11.6 0.5 1 23 275 297 275 298 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 6 8 0.98 4.6e+02 1.4 0.3 1 21 303 323 303 326 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 7 8 0.00043 0.2 12.1 0.1 1 22 331 352 331 354 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZKSCAN8-204 - 391 7e-06 26.3 41.5 8 8 0.091 43 4.7 0.3 1 21 359 379 359 381 0.92 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-met PF12874.7 25 ZMAT4-201 - 229 5.5e-28 96.5 24.5 1 4 8.5e-09 1.3e-05 25.4 1.5 2 25 15 38 14 38 0.99 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-201 - 229 5.5e-28 96.5 24.5 2 4 8.1e-11 1.2e-07 31.9 1.9 2 25 76 99 75 99 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-201 - 229 5.5e-28 96.5 24.5 3 4 2e-09 3e-06 27.4 0.1 2 25 146 169 145 169 0.99 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-201 - 229 5.5e-28 96.5 24.5 4 4 7e-09 1e-05 25.7 2.2 1 25 198 222 198 222 0.98 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZMAT4-201 - 229 3.8e-24 84.4 16.5 1 4 2.4e-08 3.6e-05 23.9 0.6 3 26 15 38 13 39 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZMAT4-201 - 229 3.8e-24 84.4 16.5 2 4 1.5e-06 0.0022 18.2 0.1 4 26 77 99 77 100 0.98 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZMAT4-201 - 229 3.8e-24 84.4 16.5 3 4 3e-10 4.4e-07 30.0 0.1 3 27 146 170 144 170 0.98 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZMAT4-201 - 229 3.8e-24 84.4 16.5 4 4 1.5e-07 0.00022 21.4 1.7 2 27 198 223 197 223 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 ZMAT4-201 - 229 5.1e-08 33.2 11.0 1 4 0.0061 9.2 6.7 0.1 45 76 8 39 4 44 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZMAT4-201 - 229 5.1e-08 33.2 11.0 2 4 0.00063 0.94 9.8 0.1 46 78 70 102 65 114 0.88 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZMAT4-201 - 229 5.1e-08 33.2 11.0 3 4 0.0076 11 6.4 0.1 50 78 144 172 133 182 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZMAT4-201 - 229 5.1e-08 33.2 11.0 4 4 8.5e-06 0.013 15.9 0.3 47 77 194 224 173 229 0.77 C2H2 type zinc-finger (2 copies) zf-U1 PF06220.12 38 ZMAT4-201 - 229 2.3e-06 27.2 17.0 1 4 1.5e-05 0.023 14.5 0.7 5 38 15 46 12 46 0.96 U1 zinc finger zf-U1 PF06220.12 38 ZMAT4-201 - 229 2.3e-06 27.2 17.0 2 4 0.19 2.9e+02 1.3 0.2 19 32 88 101 74 105 0.73 U1 zinc finger zf-U1 PF06220.12 38 ZMAT4-201 - 229 2.3e-06 27.2 17.0 3 4 3e-06 0.0045 16.7 0.2 5 36 146 175 145 177 0.89 U1 zinc finger zf-U1 PF06220.12 38 ZMAT4-201 - 229 2.3e-06 27.2 17.0 4 4 0.02 30 4.5 0.6 6 34 200 226 196 228 0.71 U1 zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-met PF12874.7 25 ZMAT4-202 - 153 5.4e-21 74.3 20.2 1 3 5.1e-09 7e-06 26.2 1.5 2 25 15 38 14 38 0.99 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-202 - 153 5.4e-21 74.3 20.2 2 3 4.9e-11 6.7e-08 32.7 1.9 2 25 76 99 75 99 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-202 - 153 5.4e-21 74.3 20.2 3 3 4.2e-09 5.8e-06 26.5 2.2 1 25 122 146 122 146 0.98 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZMAT4-202 - 153 1.9e-16 59.8 11.9 1 3 1.4e-08 2e-05 24.8 0.6 3 26 15 38 13 39 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZMAT4-202 - 153 1.9e-16 59.8 11.9 2 3 8.9e-07 0.0012 19.0 0.1 4 26 77 99 77 100 0.98 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZMAT4-202 - 153 1.9e-16 59.8 11.9 3 3 8.8e-08 0.00012 22.2 1.7 2 27 122 147 121 147 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 ZMAT4-202 - 153 4.3e-06 27.0 11.1 1 3 0.0035 4.8 7.6 0.1 45 76 8 39 4 44 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZMAT4-202 - 153 4.3e-06 27.0 11.1 2 3 0.00058 0.8 10.1 0.9 46 78 70 102 65 114 0.88 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZMAT4-202 - 153 4.3e-06 27.0 11.1 3 3 9.9e-06 0.014 15.7 0.6 47 77 118 148 106 153 0.88 C2H2 type zinc-finger (2 copies) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-met PF12874.7 25 ZMAT4-203 - 118 4.4e-08 33.2 1.9 1 2 5e-12 4.4e-08 33.2 1.9 2 25 30 53 29 53 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZMAT4-203 - 118 4.4e-08 33.2 1.9 2 2 0.93 8.3e+03 -2.6 0.2 21 25 106 110 106 110 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_jaz PF12171.8 27 ZMAT4-205 - 90 4.8e-08 33.1 0.1 1 1 1.6e-11 9.8e-08 32.1 0.1 3 27 19 43 17 43 0.98 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZMAT4-205 - 90 3.1e-07 30.6 0.1 1 1 1.1e-10 6.7e-07 29.5 0.1 2 25 19 42 18 42 0.99 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-CCCH PF00642.24 27 ZMAT5-201 - 170 3.4e-08 33.2 1.9 1 1 2.1e-11 5.4e-08 32.6 1.9 3 25 54 76 52 78 0.93 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 22 ZMAT5-201 - 170 4.6e-08 32.7 2.9 1 1 3.2e-11 8.1e-08 31.9 2.9 1 21 55 76 55 76 0.98 CCCH-type zinc finger zf-U1 PF06220.12 38 ZMAT5-201 - 170 1.8e-07 30.8 3.9 1 1 1.3e-10 3.4e-07 29.9 3.9 2 38 3 38 2 38 0.91 U1 zinc finger zf_CCCH_4 PF18345.1 19 ZMAT5-201 - 170 3.1e-06 27.0 3.0 1 1 2e-09 5.1e-06 26.3 3.0 1 19 57 76 57 76 0.99 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-U1 PF06220.12 38 ZMAT5-202 - 72 4.3e-08 32.8 3.9 1 1 9.9e-12 5.9e-08 32.3 3.9 2 38 3 38 2 38 0.91 U1 zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zmiz1_N PF18028.1 99 ZMIZ1-201 - 1067 1.5e-47 160.0 0.1 1 1 4.2e-51 2.5e-47 159.2 0.1 1 99 8 106 8 106 0.99 Zmiz1 N-terminal tetratricopeptide repeat domain zf-MIZ PF02891.20 50 ZMIZ1-201 - 1067 1.5e-21 75.9 1.6 1 2 0.25 1.5e+03 -1.0 1.7 4 24 656 676 653 681 0.88 MIZ/SP-RING zinc finger zf-MIZ PF02891.20 50 ZMIZ1-201 - 1067 1.5e-21 75.9 1.6 2 2 2.4e-25 1.5e-21 75.9 1.6 1 49 738 786 738 787 0.98 MIZ/SP-RING zinc finger zf-Nse PF11789.8 57 ZMIZ1-201 - 1067 5.8e-06 26.0 0.3 1 2 0.52 3.1e+03 -1.9 0.6 12 34 647 677 637 681 0.73 Zinc-finger of the MIZ type in Nse subunit zf-Nse PF11789.8 57 ZMIZ1-201 - 1067 5.8e-06 26.0 0.3 2 2 9.7e-10 5.8e-06 26.0 0.3 9 56 737 784 730 785 0.92 Zinc-finger of the MIZ type in Nse subunit # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-MIZ PF02891.20 50 ZMIZ1-202 - 939 2e-21 75.5 1.3 1 2 0.14 1.3e+03 -0.8 1.7 4 24 532 552 529 557 0.88 MIZ/SP-RING zinc finger zf-MIZ PF02891.20 50 ZMIZ1-202 - 939 2e-21 75.5 1.3 2 2 2.2e-25 2e-21 75.5 1.3 1 49 613 661 613 662 0.97 MIZ/SP-RING zinc finger zf-Nse PF11789.8 57 ZMIZ1-202 - 939 5e-06 26.2 0.3 1 2 0.28 2.5e+03 -1.6 0.5 12 34 523 553 513 558 0.73 Zinc-finger of the MIZ type in Nse subunit zf-Nse PF11789.8 57 ZMIZ1-202 - 939 5e-06 26.2 0.3 2 2 5.6e-10 5e-06 26.2 0.3 9 56 612 659 605 660 0.92 Zinc-finger of the MIZ type in Nse subunit # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zmiz1_N PF18028.1 99 ZMIZ1-205 - 220 1.2e-48 163.4 0.1 1 1 9.1e-53 1.6e-48 163.1 0.1 1 99 8 106 8 106 0.99 Zmiz1 N-terminal tetratricopeptide repeat domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3504 PF12012.8 164 ZMYM2-201 - 757 6.9e-64 214.7 1.5 1 2 0.77 4.6e+03 -2.6 0.0 78 106 416 446 404 453 0.59 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM2-201 - 757 6.9e-64 214.7 1.5 2 2 1.1e-67 6.9e-64 214.7 1.5 1 163 572 739 572 740 0.96 Domain of unknown function (DUF3504) zf-FCS PF06467.14 41 ZMYM2-201 - 757 2.1e-28 98.0 50.8 1 4 3.1e-13 1.8e-09 37.3 7.3 3 41 16 51 14 51 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-201 - 757 2.1e-28 98.0 50.8 2 4 1.5e-07 0.00091 19.1 4.9 4 41 59 92 56 92 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-201 - 757 2.1e-28 98.0 50.8 3 4 1.3e-10 7.8e-07 28.9 10.9 2 41 103 138 102 138 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-201 - 757 2.1e-28 98.0 50.8 4 4 3.6e-11 2.1e-07 30.7 3.9 2 41 144 179 143 179 0.95 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 1 10 4e-11 1.5e-07 31.3 2.1 2 41 327 363 326 363 0.97 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 2 10 4.2e-12 1.5e-08 34.4 1.5 2 41 369 409 368 409 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 3 10 2.8e-10 1e-06 28.6 3.3 2 41 421 456 420 456 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 4 10 2.5e-13 9e-10 38.3 4.0 2 41 463 502 462 502 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 5 10 4.2e-10 1.5e-06 28.0 6.9 3 41 533 570 531 570 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 6 10 1.7e-06 0.0062 16.4 2.1 6 41 584 616 583 616 0.87 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 7 10 1e-12 3.7e-09 36.4 7.3 3 41 636 671 634 671 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 8 10 5e-07 0.0018 18.2 4.9 4 41 679 712 676 712 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 9 10 4.3e-10 1.5e-06 28.0 10.9 2 41 723 758 722 758 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-202 - 1377 8.6e-71 233.6 117.0 10 10 1.2e-10 4.2e-07 29.8 3.9 2 41 764 799 763 799 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM2-202 - 1377 1.7e-63 213.4 1.5 1 2 4 1.4e+04 -4.2 0.2 80 106 1038 1066 1028 1068 0.52 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM2-202 - 1377 1.7e-63 213.4 1.5 2 2 4.8e-67 1.7e-63 213.4 1.5 1 163 1192 1359 1192 1360 0.96 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 1 10 4e-11 1.5e-07 31.3 2.1 2 41 327 363 326 363 0.97 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 2 10 4.2e-12 1.5e-08 34.4 1.5 2 41 369 409 368 409 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 3 10 2.8e-10 1e-06 28.6 3.3 2 41 421 456 420 456 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 4 10 2.5e-13 9e-10 38.3 4.0 2 41 463 502 462 502 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 5 10 4.2e-10 1.5e-06 28.0 6.9 3 41 533 570 531 570 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 6 10 1.7e-06 0.0062 16.4 2.1 6 41 584 616 583 616 0.87 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 7 10 1e-12 3.7e-09 36.4 7.3 3 41 636 671 634 671 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 8 10 5e-07 0.0018 18.2 4.9 4 41 679 712 676 712 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 9 10 4.3e-10 1.5e-06 28.0 10.9 2 41 723 758 722 758 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-203 - 1377 8.6e-71 233.6 117.0 10 10 1.2e-10 4.2e-07 29.8 3.9 2 41 764 799 763 799 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM2-203 - 1377 1.7e-63 213.4 1.5 1 2 4 1.4e+04 -4.2 0.2 80 106 1038 1066 1028 1068 0.52 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM2-203 - 1377 1.7e-63 213.4 1.5 2 2 4.8e-67 1.7e-63 213.4 1.5 1 163 1192 1359 1192 1360 0.96 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM2-204 - 462 5.1e-36 122.4 33.6 1 4 1.1e-11 4e-08 33.1 2.1 2 41 240 276 239 276 0.97 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-204 - 462 5.1e-36 122.4 33.6 2 4 1.1e-12 4e-09 36.2 1.5 2 41 282 322 281 322 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-204 - 462 5.1e-36 122.4 33.6 3 4 7.7e-11 2.8e-07 30.4 3.3 2 41 334 369 333 369 0.97 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-204 - 462 5.1e-36 122.4 33.6 4 4 6.7e-14 2.4e-10 40.2 4.0 2 41 376 415 375 415 0.96 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3504 PF12012.8 164 ZMYM2-205 - 591 4.4e-64 215.3 1.5 1 2 0.16 2.9e+03 -2.0 0.0 77 106 249 280 236 288 0.60 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM2-205 - 591 4.4e-64 215.3 1.5 2 2 2.5e-68 4.4e-64 215.3 1.5 1 163 406 573 406 574 0.96 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM2-206 - 134 1.9e-11 43.7 21.8 1 3 1.7 5.2e+03 -2.5 0.2 32 34 4 6 2 8 0.57 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-206 - 134 1.9e-11 43.7 21.8 2 3 2e-11 6e-08 32.5 6.9 3 41 22 59 20 59 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-206 - 134 1.9e-11 43.7 21.8 3 3 1.1e-07 0.00032 20.6 2.3 6 41 73 105 72 105 0.87 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 1 10 4e-11 1.5e-07 31.3 2.1 2 41 327 363 326 363 0.97 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 2 10 4.2e-12 1.5e-08 34.4 1.5 2 41 369 409 368 409 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 3 10 2.8e-10 1e-06 28.6 3.3 2 41 421 456 420 456 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 4 10 2.5e-13 9e-10 38.3 4.0 2 41 463 502 462 502 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 5 10 4.2e-10 1.5e-06 28.0 6.9 3 41 533 570 531 570 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 6 10 1.7e-06 0.0062 16.4 2.1 6 41 584 616 583 616 0.87 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 7 10 1e-12 3.7e-09 36.4 7.3 3 41 636 671 634 671 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 8 10 5e-07 0.0018 18.2 4.9 4 41 679 712 676 712 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 9 10 4.3e-10 1.5e-06 28.0 10.9 2 41 723 758 722 758 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM2-210 - 1377 8.6e-71 233.6 117.0 10 10 1.2e-10 4.2e-07 29.8 3.9 2 41 764 799 763 799 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM2-210 - 1377 1.7e-63 213.4 1.5 1 2 4 1.4e+04 -4.2 0.2 80 106 1038 1066 1028 1068 0.52 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM2-210 - 1377 1.7e-63 213.4 1.5 2 2 4.8e-67 1.7e-63 213.4 1.5 1 163 1192 1359 1192 1360 0.96 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 1 10 2.1e-06 0.0076 16.2 1.7 4 41 309 343 306 343 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 2 10 2.1e-11 7.5e-08 32.2 4.4 2 41 349 389 348 389 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 3 10 1.8e-10 6.3e-07 29.2 1.1 2 41 405 440 404 440 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 4 10 2.6e-13 9.4e-10 38.3 3.0 2 41 447 488 446 488 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 5 10 3.6e-10 1.3e-06 28.3 9.0 4 41 496 532 493 532 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 6 10 3.7e-09 1.3e-05 25.0 5.2 3 41 543 578 541 578 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 7 10 2.3e-11 8.2e-08 32.1 8.5 4 41 589 623 586 623 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 8 10 2.5e-10 9.1e-07 28.7 1.1 2 41 629 664 628 664 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 9 10 2.7e-08 9.8e-05 22.2 13.5 2 41 675 710 674 710 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-201 - 1370 2e-69 229.3 118.3 10 10 2.6e-11 9.4e-08 31.9 1.9 2 41 716 751 715 751 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM3-201 - 1370 1.4e-66 223.4 0.3 1 1 9.1e-70 3.3e-66 222.2 0.3 1 163 1185 1352 1185 1353 0.95 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-203 - 495 1.2e-30 105.2 32.6 1 4 6.4e-07 0.0023 17.8 1.7 4 41 309 343 306 343 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-203 - 495 1.2e-30 105.2 32.6 2 4 6.2e-12 2.2e-08 33.9 4.4 2 41 349 389 348 389 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-203 - 495 1.2e-30 105.2 32.6 3 4 5.3e-11 1.9e-07 30.9 1.1 2 41 405 440 404 440 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-203 - 495 1.2e-30 105.2 32.6 4 4 7.7e-14 2.8e-10 40.0 3.0 2 41 447 488 446 488 0.96 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-204 - 497 1.2e-30 105.1 32.6 1 4 6.4e-07 0.0023 17.8 1.7 4 41 311 345 308 345 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-204 - 497 1.2e-30 105.1 32.6 2 4 6.2e-12 2.2e-08 33.9 4.4 2 41 351 391 350 391 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-204 - 497 1.2e-30 105.1 32.6 3 4 5.3e-11 1.9e-07 30.9 1.1 2 41 407 442 406 442 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-204 - 497 1.2e-30 105.1 32.6 4 4 7.8e-14 2.8e-10 40.0 3.0 2 41 449 490 448 490 0.96 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 1 10 2e-06 0.007 16.3 1.7 4 41 311 345 308 345 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 2 10 1.9e-11 7e-08 32.3 4.4 2 41 351 391 350 391 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 3 10 1.6e-10 5.9e-07 29.3 1.1 2 41 407 442 406 442 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 4 10 2.4e-13 8.7e-10 38.4 3.0 2 41 449 490 448 490 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 5 10 3.3e-10 1.2e-06 28.4 9.0 4 41 498 534 495 534 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 6 10 3.4e-09 1.2e-05 25.1 5.2 3 41 545 580 543 580 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 7 10 2.1e-11 7.6e-08 32.2 8.5 4 41 591 625 588 625 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 8 10 2.3e-10 8.4e-07 28.8 1.1 2 41 631 666 630 666 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 9 10 2.5e-08 9.1e-05 22.3 13.5 2 41 677 712 676 712 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-205 - 1280 1e-69 230.2 118.3 10 10 2.4e-11 8.7e-08 32.0 1.9 2 41 718 753 717 753 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM3-205 - 1280 1.1e-32 113.3 0.2 1 1 7e-36 2.5e-32 112.0 0.2 68 163 1168 1262 1144 1263 0.90 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 1 10 2.1e-06 0.0076 16.2 1.7 4 41 311 345 308 345 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 2 10 2.1e-11 7.5e-08 32.2 4.4 2 41 351 391 350 391 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 3 10 1.8e-10 6.3e-07 29.2 1.1 2 41 407 442 406 442 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 4 10 2.6e-13 9.5e-10 38.3 3.0 2 41 449 490 448 490 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 5 10 3.6e-10 1.3e-06 28.2 9.0 4 41 498 534 495 534 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 6 10 3.7e-09 1.3e-05 25.0 5.2 3 41 545 580 543 580 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 7 10 2.3e-11 8.2e-08 32.1 8.5 4 41 591 625 588 625 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 8 10 2.5e-10 9.1e-07 28.7 1.1 2 41 631 666 630 666 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 9 10 2.7e-08 9.8e-05 22.2 13.5 2 41 677 712 676 712 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-206 - 1372 2e-69 229.3 118.3 10 10 2.6e-11 9.4e-08 31.9 1.9 2 41 718 753 717 753 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM3-206 - 1372 1.4e-66 223.4 0.3 1 1 9.1e-70 3.3e-66 222.2 0.3 1 163 1187 1354 1187 1355 0.95 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 1 10 2.1e-06 0.0075 16.2 1.7 4 41 309 343 306 343 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 2 10 2.1e-11 7.5e-08 32.2 4.4 2 41 349 389 348 389 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 3 10 1.7e-10 6.3e-07 29.2 1.1 2 41 405 440 404 440 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 4 10 2.6e-13 9.4e-10 38.3 3.0 2 41 447 488 446 488 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 5 10 3.5e-10 1.3e-06 28.3 9.0 4 41 496 532 493 532 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 6 10 3.6e-09 1.3e-05 25.0 5.2 3 41 543 578 541 578 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 7 10 2.3e-11 8.1e-08 32.1 8.5 4 41 589 623 586 623 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 8 10 2.5e-10 9e-07 28.7 1.1 2 41 629 664 628 664 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 9 10 2.7e-08 9.7e-05 22.2 13.5 2 41 675 710 674 710 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-207 - 1358 1.8e-69 229.4 118.3 10 10 2.6e-11 9.3e-08 31.9 1.9 2 41 716 751 715 751 0.95 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 164 ZMYM3-207 - 1358 1.6e-66 223.3 0.3 1 1 9e-70 3.2e-66 222.3 0.3 1 163 1173 1340 1173 1341 0.95 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 1 9 9.1e-07 0.0041 17.0 1.7 4 41 309 343 306 343 0.93 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 2 9 9e-12 4e-08 33.1 4.4 2 41 349 389 348 389 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 3 9 7.6e-11 3.4e-07 30.1 1.1 2 41 405 440 404 440 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 4 9 1.1e-13 5e-10 39.1 3.0 2 41 447 488 446 488 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 5 9 1.5e-10 6.8e-07 29.1 9.0 4 41 496 532 493 532 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 6 9 1.6e-09 7.1e-06 25.9 5.2 3 41 543 578 541 578 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 7 9 9.8e-12 4.4e-08 32.9 8.5 4 41 589 623 586 623 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 8 9 1.1e-10 4.9e-07 29.6 1.1 2 41 629 664 628 664 0.94 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM3-209 - 797 1.1e-63 210.9 108.9 9 9 1.2e-08 5.3e-05 23.1 13.5 2 41 675 710 674 710 0.94 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3504 PF12012.8 164 ZMYM4-201 - 1548 1.9e-64 216.5 1.0 1 3 3 1.8e+04 -4.6 1.7 42 90 118 174 115 189 0.51 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM4-201 - 1548 1.9e-64 216.5 1.0 2 3 2.3 1.3e+04 -4.2 0.2 90 118 542 569 505 573 0.60 Domain of unknown function (DUF3504) DUF3504 PF12012.8 164 ZMYM4-201 - 1548 1.9e-64 216.5 1.0 3 3 3.1e-68 1.9e-64 216.5 1.0 1 164 1356 1526 1356 1526 0.93 Domain of unknown function (DUF3504) zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 1 10 1e-10 6.2e-07 29.3 1.7 2 41 337 373 336 373 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 2 10 1.4e-11 8.2e-08 32.1 4.5 2 41 385 425 384 425 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 3 10 7.7e-08 0.00046 20.1 2.7 3 41 441 475 439 475 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 4 10 1.7e-12 1e-08 34.9 11.4 2 41 482 521 481 521 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 5 10 5.9e-05 0.35 10.8 0.2 4 41 529 565 526 565 0.83 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 6 10 0.00046 2.7 8.0 1.2 5 38 578 608 574 611 0.67 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 7 10 1.2e-09 7e-06 25.9 2.8 3 41 684 719 683 719 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 8 10 3.9e-10 2.3e-06 27.4 0.8 2 41 725 760 724 760 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 9 10 1.4e-05 0.084 12.8 8.1 3 41 772 806 770 806 0.72 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-201 - 1548 7.4e-51 169.8 98.2 10 10 3.5e-07 0.0021 18.0 0.7 4 39 814 845 812 847 0.93 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3504 PF12012.8 164 ZMYM4-203 - 1197 6.4e-65 218.0 1.0 1 1 2.2e-68 1.3e-64 217.0 1.0 1 164 1005 1175 1005 1175 0.93 Domain of unknown function (DUF3504) zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 1 8 7.8e-11 4.7e-07 29.7 1.7 2 41 76 112 75 112 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 2 8 1e-11 6.1e-08 32.5 4.5 2 41 124 164 123 164 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 3 8 5.7e-08 0.00034 20.5 2.7 3 41 180 214 178 214 0.95 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 4 8 1.3e-12 7.8e-09 35.3 11.4 2 41 221 260 220 260 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 5 8 8.8e-10 5.2e-06 26.3 2.8 3 41 334 369 333 369 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 6 8 2.9e-10 1.7e-06 27.8 0.8 2 41 375 410 374 410 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 7 8 1.1e-05 0.063 13.2 8.1 3 41 422 456 420 456 0.72 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-203 - 1197 9.3e-49 163.1 84.8 8 8 2.6e-07 0.0016 18.3 0.7 4 39 464 495 462 497 0.93 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-FCS PF06467.14 41 ZMYM4-205 - 148 2.6e-08 33.6 9.6 1 2 9e-12 2.7e-08 33.6 1.7 2 41 76 112 75 112 0.96 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 ZMYM4-205 - 148 2.6e-08 33.6 9.6 2 2 0.01 31 4.6 1.2 2 12 124 134 123 143 0.84 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF160-201 - 147 1.1e-26 92.2 0.1 1 1 8.8e-31 1.6e-26 91.7 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 1 21 0.00042 0.23 11.9 0.9 13 25 255 267 229 268 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 2 21 4.6e-11 2.6e-08 33.9 1.0 1 25 271 295 271 295 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 3 21 1.3e-08 7.3e-06 26.2 2.1 1 26 299 324 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 4 21 4.9e-10 2.8e-07 30.7 1.0 2 24 328 350 327 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 5 21 3.7e-09 2.1e-06 27.9 0.4 1 25 355 379 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 6 21 3e-09 1.7e-06 28.2 0.7 2 25 384 407 383 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 7 21 1.2e-08 6.8e-06 26.3 0.4 4 25 414 435 411 436 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 8 21 8.4e-11 4.7e-08 33.1 1.0 4 25 442 463 439 463 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 9 21 5.1e-08 2.9e-05 24.3 0.4 1 25 467 491 467 492 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 10 21 1.9e-10 1.1e-07 32.0 0.4 2 25 496 519 495 519 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 11 21 7.4e-10 4.1e-07 30.1 0.2 1 25 523 547 523 548 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 12 21 1.1e-09 6.1e-07 29.6 0.8 1 25 551 575 551 576 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 13 21 3.6e-09 2e-06 28.0 0.1 2 25 580 603 579 604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 14 21 3.1e-09 1.7e-06 28.2 3.4 1 26 607 632 607 632 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 15 21 2.9e-10 1.6e-07 31.4 0.8 2 25 636 659 635 659 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 16 21 1.6e-09 8.9e-07 29.1 0.6 1 25 663 687 663 688 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 17 21 2.6e-10 1.4e-07 31.6 1.4 1 25 691 715 691 715 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 18 21 4.1e-10 2.3e-07 30.9 0.6 1 25 719 743 719 744 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 19 21 5.8e-10 3.3e-07 30.4 1.6 1 24 747 770 747 771 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 20 21 5.5e-10 3.1e-07 30.5 0.4 1 25 775 799 775 800 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-202 - 818 6.3e-152 487.9 148.0 21 21 0.00067 0.38 11.3 0.9 1 16 803 818 803 818 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 1 20 8.5e-10 4.7e-07 29.9 1.0 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 2 20 7e-08 3.9e-05 23.9 0.5 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 3 20 5e-08 2.8e-05 24.3 4.8 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 4 20 9.4e-08 5.3e-05 23.5 1.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 5 20 6.8e-08 3.8e-05 23.9 1.4 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 6 20 3.1e-07 0.00017 21.8 0.2 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 7 20 6e-08 3.3e-05 24.1 1.6 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 8 20 2.7e-07 0.00015 22.0 0.8 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 9 20 1.7e-08 9.8e-06 25.8 1.1 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 10 20 6.8e-08 3.8e-05 23.9 0.3 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 11 20 1e-06 0.00058 20.2 2.2 1 23 537 559 537 559 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 12 20 8e-09 4.5e-06 26.8 0.2 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 13 20 7.2e-07 0.0004 20.7 0.5 1 23 593 615 593 615 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 14 20 5e-08 2.8e-05 24.3 4.8 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 15 20 7.7e-07 0.00043 20.6 1.7 1 23 649 671 649 671 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 16 20 1.4e-09 7.6e-07 29.2 2.7 1 23 677 699 677 699 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 17 20 8.3e-08 4.6e-05 23.6 0.3 1 23 705 727 705 727 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 18 20 7.6e-09 4.2e-06 26.9 1.1 1 23 733 755 733 755 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 19 20 3.7e-08 2.1e-05 24.7 0.5 1 23 761 783 761 783 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-202 - 818 4.9e-121 388.9 157.2 20 20 3.3e-09 1.8e-06 28.0 2.5 1 23 789 811 789 811 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 1 20 5.6e-05 0.032 15.1 0.6 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 2 20 0.0003 0.17 12.8 0.4 1 23 285 307 285 308 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 3 20 0.0008 0.45 11.5 3.4 1 23 313 335 313 336 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 4 20 0.0003 0.17 12.8 0.8 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 5 20 3.9e-05 0.022 15.6 1.4 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 6 20 0.0009 0.51 11.3 0.2 1 23 397 419 397 420 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 7 20 3.6e-05 0.02 15.7 1.0 1 23 425 447 425 448 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 8 20 0.00061 0.34 11.9 0.7 1 23 453 475 453 476 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 9 20 2.1e-05 0.012 16.4 0.8 1 23 481 503 481 504 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 10 20 0.0001 0.056 14.3 0.4 1 23 509 531 509 532 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 11 20 4.5e-05 0.025 15.4 1.7 1 23 537 559 537 560 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 12 20 3.1e-06 0.0018 19.0 0.4 1 23 565 587 565 588 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 13 20 0.0001 0.058 14.2 0.3 1 23 593 615 593 616 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 14 20 0.0008 0.45 11.5 3.4 1 23 621 643 621 644 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 15 20 0.00068 0.38 11.7 1.1 1 23 649 671 649 672 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 16 20 2.7e-06 0.0015 19.2 1.8 1 23 677 699 677 700 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 17 20 0.00021 0.12 13.3 0.3 1 23 705 727 705 728 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 18 20 2.5e-05 0.014 16.2 0.7 1 23 733 755 733 756 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 19 20 2.8e-05 0.016 16.0 0.4 1 23 761 783 761 784 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-202 - 818 2.5e-59 192.7 146.1 20 20 7e-05 0.039 14.8 1.9 1 23 789 811 789 812 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 1 20 7.9e-05 0.044 13.8 0.8 2 25 257 280 257 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 2 20 0.00099 0.56 10.3 0.8 2 11 285 294 285 297 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 3 20 0.0011 0.63 10.1 1.6 2 12 313 323 313 336 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 4 20 0.0013 0.7 10.0 0.5 2 20 341 359 341 362 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 5 20 0.021 12 6.1 2.7 2 12 369 379 369 390 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 6 20 0.0053 3 8.0 0.7 2 12 397 407 397 408 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 7 20 2.6e-05 0.015 15.3 0.9 2 24 425 447 425 450 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 8 20 0.00034 0.19 11.8 0.8 2 20 453 471 453 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 9 20 0.0012 0.66 10.1 0.5 2 12 481 491 481 503 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 10 20 0.00049 0.27 11.3 0.6 2 24 509 531 509 534 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 11 20 0.16 91 3.2 4.3 2 13 537 548 537 558 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 12 20 0.0017 0.93 9.6 0.6 2 11 565 574 565 576 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 13 20 0.44 2.4e+02 1.9 0.2 2 12 593 603 593 613 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 14 20 0.0011 0.63 10.1 1.6 2 12 621 631 621 644 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 15 20 1.4e-05 0.0076 16.2 1.6 2 21 649 668 649 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 16 20 0.011 6.4 6.9 3.4 2 12 677 687 677 700 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 17 20 0.00067 0.37 10.8 0.3 2 22 705 725 705 729 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 18 20 0.0076 4.2 7.5 3.7 2 12 733 743 733 754 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 19 20 2.9e-05 0.016 15.2 0.2 2 24 761 783 761 786 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-202 - 818 6.2e-32 109.0 155.0 20 20 0.00022 0.12 12.4 1.3 1 22 788 809 788 813 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 1 20 0.00016 0.089 12.9 4.2 6 35 257 293 256 297 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 2 20 0.00023 0.13 12.4 4.4 6 34 285 320 283 320 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 3 20 7e-05 0.039 14.1 3.8 6 36 313 350 312 354 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 4 20 0.001 0.57 10.3 3.7 6 34 341 376 340 382 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 5 20 0.051 29 4.9 0.3 6 16 369 379 368 389 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 6 20 3.6e-05 0.02 15.0 3.0 6 34 397 432 396 435 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 7 20 0.00017 0.094 12.8 4.0 6 34 425 460 424 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 8 20 0.014 7.8 6.7 4.5 6 33 453 487 451 492 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 9 20 0.0018 1 9.5 3.9 6 34 481 516 480 521 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 10 20 9.8e-05 0.055 13.6 2.8 6 35 509 545 508 549 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 11 20 0.0036 2 8.6 4.4 6 34 537 572 535 576 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 12 20 0.0059 3.3 7.9 0.4 6 16 565 575 563 584 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 13 20 0.00022 0.12 12.5 4.0 6 34 593 628 592 632 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 14 20 0.00015 0.087 13.0 4.3 6 34 621 656 620 660 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 15 20 0.01 5.7 7.1 0.3 6 16 649 659 648 669 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 16 20 4.3e-05 0.024 14.7 3.6 6 34 677 712 676 717 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 17 20 0.00086 0.48 10.6 0.2 6 21 705 720 704 728 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 18 20 5.2e-05 0.029 14.5 4.1 6 36 733 770 732 773 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 19 20 0.0017 0.93 9.7 0.3 6 20 761 775 760 781 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-202 - 818 3.2e-28 97.6 103.9 20 20 0.0025 1.4 9.1 0.1 6 17 789 800 788 813 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 1 20 0.00096 0.54 10.1 0.1 5 26 257 278 255 279 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 2 20 0.013 7.3 6.5 0.1 5 24 285 304 282 307 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 3 20 0.1 57 3.6 0.4 5 26 313 334 310 335 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 4 20 0.19 1e+02 2.8 0.1 5 23 341 359 338 363 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 5 20 0.04 22 4.9 0.1 5 26 369 390 366 391 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 6 20 0.0025 1.4 8.7 0.1 5 26 397 418 394 419 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 7 20 0.016 8.8 6.2 0.1 5 26 425 446 422 447 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 8 20 0.01 5.8 6.8 0.1 5 26 453 474 450 475 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 9 20 0.044 25 4.7 0.2 5 26 481 502 479 503 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 10 20 0.0011 0.6 9.9 0.1 5 26 509 530 506 531 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 11 20 0.0012 0.68 9.7 0.6 5 26 537 558 534 559 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 12 20 0.0018 1 9.2 0.0 5 25 565 585 562 587 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 13 20 0.0023 1.3 8.9 0.1 5 25 593 613 590 615 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 14 20 0.1 57 3.6 0.4 5 26 621 642 618 643 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 15 20 0.01 5.6 6.8 0.1 5 26 649 670 646 671 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 16 20 0.035 19 5.1 0.2 5 23 677 695 674 698 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 17 20 0.00083 0.47 10.3 0.1 5 26 705 726 702 727 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 18 20 0.00099 0.55 10.0 0.1 5 26 733 754 731 755 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 19 20 0.00046 0.26 11.1 0.1 5 26 761 782 758 783 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-202 - 818 4.1e-26 90.4 84.1 20 20 0.48 2.7e+02 1.5 0.7 5 22 789 806 787 811 0.72 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF160-202 - 818 1.1e-25 89.0 0.1 1 1 3.4e-28 1.9e-25 88.2 0.1 2 42 8 48 7 48 0.98 KRAB box XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 1 20 0.019 11 6.2 0.1 3 12 258 267 256 274 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 2 20 0.032 18 5.5 0.1 3 12 286 295 284 296 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 3 20 0.012 6.5 6.9 0.0 3 18 314 330 312 331 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 4 20 0.036 20 5.3 0.1 3 11 342 350 340 358 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 5 20 0.042 23 5.1 0.1 3 13 370 380 368 390 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 6 20 0.036 20 5.3 0.1 3 12 398 407 396 408 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 7 20 0.053 30 4.8 0.0 3 16 426 440 424 443 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 8 20 0.027 15 5.7 0.1 3 12 454 463 452 471 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 9 20 0.12 66 3.7 0.2 3 13 482 492 480 499 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 10 20 0.03 17 5.5 0.0 3 12 510 519 508 526 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 11 20 0.014 8.1 6.6 0.1 3 13 538 548 536 555 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 12 20 0.019 11 6.2 0.0 3 17 566 581 564 587 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 13 20 0.11 60 3.8 0.1 3 13 594 604 592 606 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 14 20 0.012 6.5 6.9 0.0 3 18 622 638 620 639 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 15 20 0.027 15 5.7 0.1 3 12 650 659 648 667 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 16 20 0.3 1.7e+02 2.4 0.0 3 12 678 687 676 695 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 17 20 0.051 29 4.8 0.0 3 12 706 715 704 722 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 18 20 0.091 51 4.0 0.1 3 12 734 743 732 748 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 19 20 0.069 39 4.4 0.0 3 11 762 770 760 778 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-202 - 818 1.5e-21 76.1 60.7 20 20 0.028 16 5.7 0.1 3 14 790 801 788 804 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 1 20 0.013 7.2 6.3 0.1 3 20 257 275 255 276 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 2 20 0.0065 3.6 7.3 0.1 3 14 285 296 283 304 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 3 20 0.048 27 4.5 0.2 3 15 313 325 311 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 4 20 0.032 18 5.0 0.1 3 21 341 360 339 360 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 5 20 0.099 55 3.5 0.2 3 15 369 381 367 387 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 6 20 0.023 13 5.5 0.1 3 15 397 409 395 416 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 7 20 0.12 66 3.2 0.2 3 12 425 434 423 438 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 8 20 0.0014 0.76 9.4 0.2 3 21 453 472 451 472 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 9 20 0.097 54 3.5 0.1 3 20 481 499 479 500 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 10 20 0.0046 2.6 7.7 0.1 3 21 509 528 507 528 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 11 20 0.1 59 3.4 0.3 3 15 537 549 535 556 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 12 20 0.0079 4.4 7.0 0.1 3 18 565 581 563 583 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 13 20 0.15 83 2.9 0.1 3 15 593 605 591 612 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 14 20 0.048 27 4.5 0.2 3 15 621 633 619 640 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 15 20 0.0022 1.3 8.7 0.2 3 20 649 667 647 668 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 16 20 0.032 18 5.0 0.2 3 16 677 691 675 696 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 17 20 0.0069 3.9 7.2 0.1 3 21 705 724 703 724 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 18 20 0.032 18 5.1 0.1 3 15 733 745 731 752 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 19 20 0.031 17 5.1 0.0 3 20 761 779 759 780 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-202 - 818 7.4e-18 63.8 79.8 20 20 0.0066 3.7 7.2 0.2 2 20 788 807 787 808 0.88 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 1 18 0.0032 1.8 8.5 1.0 9 37 254 293 247 297 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 2 18 0.0027 1.5 8.8 1.4 9 38 282 322 274 326 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 3 18 0.019 11 6.0 3.0 1 36 303 348 303 350 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 4 18 0.018 10 6.1 2.9 9 36 338 376 330 378 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 5 18 0.0041 2.3 8.2 3.2 1 36 359 404 359 406 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 6 18 0.00019 0.1 12.5 1.0 2 37 387 433 386 437 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 7 18 0.0021 1.2 9.1 0.9 4 36 418 460 414 462 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 8 18 0.0023 1.3 9.0 1.6 4 37 446 489 443 493 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 9 18 0.016 9.2 6.2 2.3 1 37 471 517 471 521 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 10 18 0.015 8.1 6.4 1.9 9 37 506 545 498 549 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 11 18 0.015 8.7 6.3 2.0 9 37 534 573 527 576 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 12 18 0.00078 0.44 10.5 0.4 9 38 562 602 554 605 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 13 18 0.00023 0.13 12.2 0.7 2 38 583 630 582 634 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 14 18 0.014 8 6.4 2.2 5 36 615 656 611 662 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 15 18 0.0055 3.1 7.8 2.1 9 37 646 685 638 689 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 16 18 0.0034 1.9 8.4 4.3 9 37 674 713 667 747 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 17 18 0.0012 0.67 9.9 0.6 4 37 726 769 723 773 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-202 - 818 6.6e-15 54.7 76.4 18 18 0.0017 0.93 9.4 0.3 9 37 758 797 747 801 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 1 15 0.0061 3.4 8.5 3.6 36 76 255 295 225 300 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 2 15 0.0047 2.6 8.8 1.2 34 76 309 351 300 359 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 3 15 0.0015 0.86 10.4 0.8 35 75 366 406 359 412 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 4 15 0.002 1.1 10.0 1.2 33 76 420 463 412 471 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 5 15 0.0025 1.4 9.7 2.3 35 75 478 518 468 524 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 6 15 0.007 3.9 8.3 1.8 32 78 503 549 499 552 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 7 15 0.029 16 6.3 1.9 35 77 534 576 525 583 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 8 15 0.00085 0.48 11.2 0.7 35 77 562 604 556 608 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 9 15 0.0004 0.22 12.3 0.7 29 78 584 633 579 639 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 10 15 0.0045 2.5 8.9 1.4 34 76 617 659 608 667 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 11 15 0.0015 0.83 10.4 2.0 32 78 643 689 635 692 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 12 15 0.00032 0.18 12.6 2.1 34 75 673 714 663 720 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 13 15 0.0058 3.2 8.5 2.4 35 78 702 745 694 751 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 14 15 0.0014 0.81 10.5 1.5 33 75 728 770 719 779 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-202 - 818 1.4e-11 44.9 83.7 15 15 0.0022 1.2 9.9 1.5 33 79 756 802 752 807 0.86 zinc-ribbon family HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 1 13 0.15 82 3.2 0.1 32 50 257 277 254 279 0.66 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 2 13 0.001 0.59 10.1 0.3 1 42 283 323 283 334 0.82 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 3 13 0.011 6.4 6.8 0.6 1 50 339 389 339 391 0.76 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 4 13 0.0094 5.3 7.0 0.3 1 41 395 434 395 446 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 5 13 0.0041 2.3 8.2 0.1 1 42 451 491 451 503 0.83 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 6 13 0.057 32 4.5 0.3 2 40 480 517 479 531 0.72 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 7 13 0.11 61 3.6 0.7 2 40 508 545 507 558 0.67 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 8 13 0.0039 2.2 8.3 1.0 1 45 535 578 535 587 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 9 13 0.11 63 3.6 1.0 2 41 592 630 591 642 0.69 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 10 13 0.00018 0.099 12.6 0.3 1 50 647 697 647 699 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 11 13 0.0099 5.6 7.0 0.8 1 42 703 743 703 755 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 12 13 0.011 6.1 6.8 0.8 2 40 732 769 731 782 0.75 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-202 - 818 3.1e-11 43.0 60.4 13 13 0.0015 0.84 9.6 0.9 1 50 759 809 759 811 0.75 Halobacterial output domain 2 C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 1 15 0.1 57 4.1 0.2 19 48 250 279 240 282 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 2 15 5.2e-05 0.029 14.6 1.2 1 49 258 308 258 310 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 3 15 0.23 1.3e+02 2.9 2.7 2 48 315 363 314 366 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 4 15 0.098 55 4.1 2.0 1 44 342 387 342 394 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 5 15 0.0009 0.51 10.6 1.2 2 49 371 420 370 422 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 6 15 0.029 16 5.8 2.3 20 49 447 476 426 480 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 7 15 0.001 0.56 10.5 1.5 1 49 482 532 482 534 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 8 15 0.011 6 7.2 1.1 1 35 538 574 538 588 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 9 15 1 5.9e+02 0.8 0.2 23 37 590 604 574 617 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 10 15 0.45 2.5e+02 2.0 2.9 2 36 595 631 594 645 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 11 15 0.015 8.4 6.7 3.2 2 49 623 672 622 674 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 12 15 0.00057 0.32 11.3 1.6 2 49 679 728 678 731 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 13 15 0.16 92 3.4 0.3 20 48 727 755 719 758 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 14 15 0.012 6.7 7.0 1.5 2 48 735 783 734 786 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-202 - 818 8.9e-09 35.5 86.8 15 15 0.0076 4.3 7.7 2.3 2 48 763 811 762 813 0.75 TFIIH C1-like domain HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 1 9 0.049 28 4.8 5.0 64 94 474 516 442 522 0.57 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 2 9 0.26 1.5e+02 2.5 9.0 49 95 488 545 480 579 0.67 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 3 9 0.0068 3.8 7.6 0.7 64 95 558 601 544 606 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 4 9 0.012 6.8 6.8 3.1 64 94 614 656 574 663 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 5 9 0.0025 1.4 9.0 1.2 64 95 642 685 628 691 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 6 9 0.0029 1.6 8.7 1.3 64 95 670 713 659 721 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 7 9 0.0045 2.5 8.1 1.2 67 95 701 741 685 748 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 8 9 0.0032 1.8 8.6 0.9 64 95 726 769 716 778 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-202 - 818 5.2e-08 32.9 72.3 9 9 0.064 36 4.4 0.1 60 83 778 801 772 810 0.82 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 1 12 0.61 3.4e+02 -0.1 0.0 67 101 265 297 244 304 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 2 12 0.037 21 4.0 0.1 73 106 299 330 260 340 0.72 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 3 12 0.74 4.2e+02 -0.3 0.0 76 103 328 355 320 361 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 4 12 0.018 9.9 5.0 0.1 81 103 361 383 348 399 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 5 12 0.18 99 1.7 0.0 72 101 406 437 399 441 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 6 12 0.26 1.5e+02 1.2 0.0 79 107 443 471 433 506 0.65 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 7 12 1.1 5.9e+02 -0.8 0.0 75 103 495 523 484 539 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 8 12 0.088 49 2.7 0.0 78 103 554 579 526 595 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 9 12 0.046 26 3.7 0.0 80 106 612 638 590 645 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 10 12 0.073 41 3.0 0.1 79 103 667 691 651 704 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 11 12 0.23 1.3e+02 1.4 0.0 72 103 714 747 693 757 0.74 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-202 - 818 9.7e-07 28.1 15.2 12 12 0.16 89 1.9 0.0 79 102 779 802 751 812 0.77 Family of unknown function, FAM178 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 1 10 0.065 36 4.3 0.0 15 40 292 322 291 342 0.80 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 2 10 6.9 3.9e+03 -2.2 0.0 21 37 354 370 352 395 0.76 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 3 10 1.8 1e+03 -0.3 0.0 18 40 407 434 404 453 0.74 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 4 10 0.27 1.5e+02 2.3 0.0 17 37 462 482 460 509 0.81 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 5 10 0.22 1.2e+02 2.6 0.0 17 38 518 539 516 544 0.84 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 6 10 0.076 43 4.1 0.0 17 39 546 573 542 594 0.79 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 7 10 1.2 7e+02 0.2 0.0 22 40 607 630 605 649 0.75 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 8 10 1.2 6.7e+02 0.2 0.0 17 39 658 685 656 706 0.72 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 9 10 0.13 73 3.3 0.0 17 40 714 742 712 763 0.77 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-202 - 818 3.4e-06 26.8 6.2 10 10 4.9 2.7e+03 -1.7 0.0 19 40 772 798 768 814 0.75 Rad4 beta-hairpin domain 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 1 21 0.00042 0.23 11.9 0.9 13 25 255 267 229 268 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 2 21 4.6e-11 2.6e-08 33.9 1.0 1 25 271 295 271 295 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 3 21 1.3e-08 7.3e-06 26.2 2.1 1 26 299 324 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 4 21 4.9e-10 2.8e-07 30.7 1.0 2 24 328 350 327 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 5 21 3.7e-09 2.1e-06 27.9 0.4 1 25 355 379 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 6 21 3e-09 1.7e-06 28.2 0.7 2 25 384 407 383 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 7 21 1.2e-08 6.8e-06 26.3 0.4 4 25 414 435 411 436 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 8 21 8.4e-11 4.7e-08 33.1 1.0 4 25 442 463 439 463 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 9 21 5.1e-08 2.9e-05 24.3 0.4 1 25 467 491 467 492 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 10 21 1.9e-10 1.1e-07 32.0 0.4 2 25 496 519 495 519 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 11 21 7.4e-10 4.1e-07 30.1 0.2 1 25 523 547 523 548 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 12 21 1.1e-09 6.1e-07 29.6 0.8 1 25 551 575 551 576 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 13 21 3.6e-09 2e-06 28.0 0.1 2 25 580 603 579 604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 14 21 3.1e-09 1.7e-06 28.2 3.4 1 26 607 632 607 632 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 15 21 2.9e-10 1.6e-07 31.4 0.8 2 25 636 659 635 659 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 16 21 1.6e-09 8.9e-07 29.1 0.6 1 25 663 687 663 688 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 17 21 2.6e-10 1.4e-07 31.6 1.4 1 25 691 715 691 715 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 18 21 4.1e-10 2.3e-07 30.9 0.6 1 25 719 743 719 744 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 19 21 5.8e-10 3.3e-07 30.4 1.6 1 24 747 770 747 771 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 20 21 5.5e-10 3.1e-07 30.5 0.4 1 25 775 799 775 800 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-203 - 818 6.3e-152 487.9 148.0 21 21 0.00067 0.38 11.3 0.9 1 16 803 818 803 818 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 1 20 8.5e-10 4.7e-07 29.9 1.0 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 2 20 7e-08 3.9e-05 23.9 0.5 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 3 20 5e-08 2.8e-05 24.3 4.8 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 4 20 9.4e-08 5.3e-05 23.5 1.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 5 20 6.8e-08 3.8e-05 23.9 1.4 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 6 20 3.1e-07 0.00017 21.8 0.2 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 7 20 6e-08 3.3e-05 24.1 1.6 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 8 20 2.7e-07 0.00015 22.0 0.8 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 9 20 1.7e-08 9.8e-06 25.8 1.1 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 10 20 6.8e-08 3.8e-05 23.9 0.3 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 11 20 1e-06 0.00058 20.2 2.2 1 23 537 559 537 559 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 12 20 8e-09 4.5e-06 26.8 0.2 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 13 20 7.2e-07 0.0004 20.7 0.5 1 23 593 615 593 615 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 14 20 5e-08 2.8e-05 24.3 4.8 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 15 20 7.7e-07 0.00043 20.6 1.7 1 23 649 671 649 671 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 16 20 1.4e-09 7.6e-07 29.2 2.7 1 23 677 699 677 699 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 17 20 8.3e-08 4.6e-05 23.6 0.3 1 23 705 727 705 727 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 18 20 7.6e-09 4.2e-06 26.9 1.1 1 23 733 755 733 755 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 19 20 3.7e-08 2.1e-05 24.7 0.5 1 23 761 783 761 783 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-203 - 818 4.9e-121 388.9 157.2 20 20 3.3e-09 1.8e-06 28.0 2.5 1 23 789 811 789 811 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 1 20 5.6e-05 0.032 15.1 0.6 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 2 20 0.0003 0.17 12.8 0.4 1 23 285 307 285 308 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 3 20 0.0008 0.45 11.5 3.4 1 23 313 335 313 336 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 4 20 0.0003 0.17 12.8 0.8 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 5 20 3.9e-05 0.022 15.6 1.4 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 6 20 0.0009 0.51 11.3 0.2 1 23 397 419 397 420 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 7 20 3.6e-05 0.02 15.7 1.0 1 23 425 447 425 448 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 8 20 0.00061 0.34 11.9 0.7 1 23 453 475 453 476 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 9 20 2.1e-05 0.012 16.4 0.8 1 23 481 503 481 504 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 10 20 0.0001 0.056 14.3 0.4 1 23 509 531 509 532 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 11 20 4.5e-05 0.025 15.4 1.7 1 23 537 559 537 560 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 12 20 3.1e-06 0.0018 19.0 0.4 1 23 565 587 565 588 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 13 20 0.0001 0.058 14.2 0.3 1 23 593 615 593 616 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 14 20 0.0008 0.45 11.5 3.4 1 23 621 643 621 644 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 15 20 0.00068 0.38 11.7 1.1 1 23 649 671 649 672 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 16 20 2.7e-06 0.0015 19.2 1.8 1 23 677 699 677 700 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 17 20 0.00021 0.12 13.3 0.3 1 23 705 727 705 728 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 18 20 2.5e-05 0.014 16.2 0.7 1 23 733 755 733 756 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 19 20 2.8e-05 0.016 16.0 0.4 1 23 761 783 761 784 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-203 - 818 2.5e-59 192.7 146.1 20 20 7e-05 0.039 14.8 1.9 1 23 789 811 789 812 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 1 20 7.9e-05 0.044 13.8 0.8 2 25 257 280 257 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 2 20 0.00099 0.56 10.3 0.8 2 11 285 294 285 297 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 3 20 0.0011 0.63 10.1 1.6 2 12 313 323 313 336 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 4 20 0.0013 0.7 10.0 0.5 2 20 341 359 341 362 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 5 20 0.021 12 6.1 2.7 2 12 369 379 369 390 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 6 20 0.0053 3 8.0 0.7 2 12 397 407 397 408 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 7 20 2.6e-05 0.015 15.3 0.9 2 24 425 447 425 450 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 8 20 0.00034 0.19 11.8 0.8 2 20 453 471 453 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 9 20 0.0012 0.66 10.1 0.5 2 12 481 491 481 503 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 10 20 0.00049 0.27 11.3 0.6 2 24 509 531 509 534 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 11 20 0.16 91 3.2 4.3 2 13 537 548 537 558 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 12 20 0.0017 0.93 9.6 0.6 2 11 565 574 565 576 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 13 20 0.44 2.4e+02 1.9 0.2 2 12 593 603 593 613 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 14 20 0.0011 0.63 10.1 1.6 2 12 621 631 621 644 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 15 20 1.4e-05 0.0076 16.2 1.6 2 21 649 668 649 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 16 20 0.011 6.4 6.9 3.4 2 12 677 687 677 700 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 17 20 0.00067 0.37 10.8 0.3 2 22 705 725 705 729 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 18 20 0.0076 4.2 7.5 3.7 2 12 733 743 733 754 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 19 20 2.9e-05 0.016 15.2 0.2 2 24 761 783 761 786 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-203 - 818 6.2e-32 109.0 155.0 20 20 0.00022 0.12 12.4 1.3 1 22 788 809 788 813 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 1 20 0.00016 0.089 12.9 4.2 6 35 257 293 256 297 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 2 20 0.00023 0.13 12.4 4.4 6 34 285 320 283 320 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 3 20 7e-05 0.039 14.1 3.8 6 36 313 350 312 354 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 4 20 0.001 0.57 10.3 3.7 6 34 341 376 340 382 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 5 20 0.051 29 4.9 0.3 6 16 369 379 368 389 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 6 20 3.6e-05 0.02 15.0 3.0 6 34 397 432 396 435 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 7 20 0.00017 0.094 12.8 4.0 6 34 425 460 424 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 8 20 0.014 7.8 6.7 4.5 6 33 453 487 451 492 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 9 20 0.0018 1 9.5 3.9 6 34 481 516 480 521 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 10 20 9.8e-05 0.055 13.6 2.8 6 35 509 545 508 549 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 11 20 0.0036 2 8.6 4.4 6 34 537 572 535 576 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 12 20 0.0059 3.3 7.9 0.4 6 16 565 575 563 584 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 13 20 0.00022 0.12 12.5 4.0 6 34 593 628 592 632 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 14 20 0.00015 0.087 13.0 4.3 6 34 621 656 620 660 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 15 20 0.01 5.7 7.1 0.3 6 16 649 659 648 669 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 16 20 4.3e-05 0.024 14.7 3.6 6 34 677 712 676 717 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 17 20 0.00086 0.48 10.6 0.2 6 21 705 720 704 728 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 18 20 5.2e-05 0.029 14.5 4.1 6 36 733 770 732 773 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 19 20 0.0017 0.93 9.7 0.3 6 20 761 775 760 781 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-203 - 818 3.2e-28 97.6 103.9 20 20 0.0025 1.4 9.1 0.1 6 17 789 800 788 813 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 1 20 0.00096 0.54 10.1 0.1 5 26 257 278 255 279 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 2 20 0.013 7.3 6.5 0.1 5 24 285 304 282 307 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 3 20 0.1 57 3.6 0.4 5 26 313 334 310 335 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 4 20 0.19 1e+02 2.8 0.1 5 23 341 359 338 363 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 5 20 0.04 22 4.9 0.1 5 26 369 390 366 391 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 6 20 0.0025 1.4 8.7 0.1 5 26 397 418 394 419 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 7 20 0.016 8.8 6.2 0.1 5 26 425 446 422 447 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 8 20 0.01 5.8 6.8 0.1 5 26 453 474 450 475 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 9 20 0.044 25 4.7 0.2 5 26 481 502 479 503 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 10 20 0.0011 0.6 9.9 0.1 5 26 509 530 506 531 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 11 20 0.0012 0.68 9.7 0.6 5 26 537 558 534 559 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 12 20 0.0018 1 9.2 0.0 5 25 565 585 562 587 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 13 20 0.0023 1.3 8.9 0.1 5 25 593 613 590 615 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 14 20 0.1 57 3.6 0.4 5 26 621 642 618 643 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 15 20 0.01 5.6 6.8 0.1 5 26 649 670 646 671 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 16 20 0.035 19 5.1 0.2 5 23 677 695 674 698 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 17 20 0.00083 0.47 10.3 0.1 5 26 705 726 702 727 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 18 20 0.00099 0.55 10.0 0.1 5 26 733 754 731 755 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 19 20 0.00046 0.26 11.1 0.1 5 26 761 782 758 783 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-203 - 818 4.1e-26 90.4 84.1 20 20 0.48 2.7e+02 1.5 0.7 5 22 789 806 787 811 0.72 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF160-203 - 818 1.1e-25 89.0 0.1 1 1 3.4e-28 1.9e-25 88.2 0.1 2 42 8 48 7 48 0.98 KRAB box XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 1 20 0.019 11 6.2 0.1 3 12 258 267 256 274 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 2 20 0.032 18 5.5 0.1 3 12 286 295 284 296 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 3 20 0.012 6.5 6.9 0.0 3 18 314 330 312 331 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 4 20 0.036 20 5.3 0.1 3 11 342 350 340 358 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 5 20 0.042 23 5.1 0.1 3 13 370 380 368 390 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 6 20 0.036 20 5.3 0.1 3 12 398 407 396 408 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 7 20 0.053 30 4.8 0.0 3 16 426 440 424 443 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 8 20 0.027 15 5.7 0.1 3 12 454 463 452 471 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 9 20 0.12 66 3.7 0.2 3 13 482 492 480 499 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 10 20 0.03 17 5.5 0.0 3 12 510 519 508 526 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 11 20 0.014 8.1 6.6 0.1 3 13 538 548 536 555 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 12 20 0.019 11 6.2 0.0 3 17 566 581 564 587 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 13 20 0.11 60 3.8 0.1 3 13 594 604 592 606 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 14 20 0.012 6.5 6.9 0.0 3 18 622 638 620 639 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 15 20 0.027 15 5.7 0.1 3 12 650 659 648 667 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 16 20 0.3 1.7e+02 2.4 0.0 3 12 678 687 676 695 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 17 20 0.051 29 4.8 0.0 3 12 706 715 704 722 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 18 20 0.091 51 4.0 0.1 3 12 734 743 732 748 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 19 20 0.069 39 4.4 0.0 3 11 762 770 760 778 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-203 - 818 1.5e-21 76.1 60.7 20 20 0.028 16 5.7 0.1 3 14 790 801 788 804 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 1 20 0.013 7.2 6.3 0.1 3 20 257 275 255 276 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 2 20 0.0065 3.6 7.3 0.1 3 14 285 296 283 304 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 3 20 0.048 27 4.5 0.2 3 15 313 325 311 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 4 20 0.032 18 5.0 0.1 3 21 341 360 339 360 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 5 20 0.099 55 3.5 0.2 3 15 369 381 367 387 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 6 20 0.023 13 5.5 0.1 3 15 397 409 395 416 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 7 20 0.12 66 3.2 0.2 3 12 425 434 423 438 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 8 20 0.0014 0.76 9.4 0.2 3 21 453 472 451 472 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 9 20 0.097 54 3.5 0.1 3 20 481 499 479 500 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 10 20 0.0046 2.6 7.7 0.1 3 21 509 528 507 528 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 11 20 0.1 59 3.4 0.3 3 15 537 549 535 556 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 12 20 0.0079 4.4 7.0 0.1 3 18 565 581 563 583 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 13 20 0.15 83 2.9 0.1 3 15 593 605 591 612 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 14 20 0.048 27 4.5 0.2 3 15 621 633 619 640 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 15 20 0.0022 1.3 8.7 0.2 3 20 649 667 647 668 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 16 20 0.032 18 5.0 0.2 3 16 677 691 675 696 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 17 20 0.0069 3.9 7.2 0.1 3 21 705 724 703 724 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 18 20 0.032 18 5.1 0.1 3 15 733 745 731 752 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 19 20 0.031 17 5.1 0.0 3 20 761 779 759 780 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-203 - 818 7.4e-18 63.8 79.8 20 20 0.0066 3.7 7.2 0.2 2 20 788 807 787 808 0.88 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 1 18 0.0032 1.8 8.5 1.0 9 37 254 293 247 297 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 2 18 0.0027 1.5 8.8 1.4 9 38 282 322 274 326 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 3 18 0.019 11 6.0 3.0 1 36 303 348 303 350 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 4 18 0.018 10 6.1 2.9 9 36 338 376 330 378 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 5 18 0.0041 2.3 8.2 3.2 1 36 359 404 359 406 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 6 18 0.00019 0.1 12.5 1.0 2 37 387 433 386 437 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 7 18 0.0021 1.2 9.1 0.9 4 36 418 460 414 462 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 8 18 0.0023 1.3 9.0 1.6 4 37 446 489 443 493 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 9 18 0.016 9.2 6.2 2.3 1 37 471 517 471 521 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 10 18 0.015 8.1 6.4 1.9 9 37 506 545 498 549 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 11 18 0.015 8.7 6.3 2.0 9 37 534 573 527 576 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 12 18 0.00078 0.44 10.5 0.4 9 38 562 602 554 605 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 13 18 0.00023 0.13 12.2 0.7 2 38 583 630 582 634 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 14 18 0.014 8 6.4 2.2 5 36 615 656 611 662 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 15 18 0.0055 3.1 7.8 2.1 9 37 646 685 638 689 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 16 18 0.0034 1.9 8.4 4.3 9 37 674 713 667 747 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 17 18 0.0012 0.67 9.9 0.6 4 37 726 769 723 773 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-203 - 818 6.6e-15 54.7 76.4 18 18 0.0017 0.93 9.4 0.3 9 37 758 797 747 801 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 1 15 0.0061 3.4 8.5 3.6 36 76 255 295 225 300 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 2 15 0.0047 2.6 8.8 1.2 34 76 309 351 300 359 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 3 15 0.0015 0.86 10.4 0.8 35 75 366 406 359 412 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 4 15 0.002 1.1 10.0 1.2 33 76 420 463 412 471 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 5 15 0.0025 1.4 9.7 2.3 35 75 478 518 468 524 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 6 15 0.007 3.9 8.3 1.8 32 78 503 549 499 552 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 7 15 0.029 16 6.3 1.9 35 77 534 576 525 583 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 8 15 0.00085 0.48 11.2 0.7 35 77 562 604 556 608 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 9 15 0.0004 0.22 12.3 0.7 29 78 584 633 579 639 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 10 15 0.0045 2.5 8.9 1.4 34 76 617 659 608 667 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 11 15 0.0015 0.83 10.4 2.0 32 78 643 689 635 692 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 12 15 0.00032 0.18 12.6 2.1 34 75 673 714 663 720 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 13 15 0.0058 3.2 8.5 2.4 35 78 702 745 694 751 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 14 15 0.0014 0.81 10.5 1.5 33 75 728 770 719 779 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-203 - 818 1.4e-11 44.9 83.7 15 15 0.0022 1.2 9.9 1.5 33 79 756 802 752 807 0.86 zinc-ribbon family HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 1 13 0.15 82 3.2 0.1 32 50 257 277 254 279 0.66 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 2 13 0.001 0.59 10.1 0.3 1 42 283 323 283 334 0.82 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 3 13 0.011 6.4 6.8 0.6 1 50 339 389 339 391 0.76 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 4 13 0.0094 5.3 7.0 0.3 1 41 395 434 395 446 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 5 13 0.0041 2.3 8.2 0.1 1 42 451 491 451 503 0.83 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 6 13 0.057 32 4.5 0.3 2 40 480 517 479 531 0.72 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 7 13 0.11 61 3.6 0.7 2 40 508 545 507 558 0.67 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 8 13 0.0039 2.2 8.3 1.0 1 45 535 578 535 587 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 9 13 0.11 63 3.6 1.0 2 41 592 630 591 642 0.69 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 10 13 0.00018 0.099 12.6 0.3 1 50 647 697 647 699 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 11 13 0.0099 5.6 7.0 0.8 1 42 703 743 703 755 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 12 13 0.011 6.1 6.8 0.8 2 40 732 769 731 782 0.75 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-203 - 818 3.1e-11 43.0 60.4 13 13 0.0015 0.84 9.6 0.9 1 50 759 809 759 811 0.75 Halobacterial output domain 2 C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 1 15 0.1 57 4.1 0.2 19 48 250 279 240 282 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 2 15 5.2e-05 0.029 14.6 1.2 1 49 258 308 258 310 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 3 15 0.23 1.3e+02 2.9 2.7 2 48 315 363 314 366 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 4 15 0.098 55 4.1 2.0 1 44 342 387 342 394 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 5 15 0.0009 0.51 10.6 1.2 2 49 371 420 370 422 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 6 15 0.029 16 5.8 2.3 20 49 447 476 426 480 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 7 15 0.001 0.56 10.5 1.5 1 49 482 532 482 534 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 8 15 0.011 6 7.2 1.1 1 35 538 574 538 588 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 9 15 1 5.9e+02 0.8 0.2 23 37 590 604 574 617 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 10 15 0.45 2.5e+02 2.0 2.9 2 36 595 631 594 645 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 11 15 0.015 8.4 6.7 3.2 2 49 623 672 622 674 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 12 15 0.00057 0.32 11.3 1.6 2 49 679 728 678 731 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 13 15 0.16 92 3.4 0.3 20 48 727 755 719 758 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 14 15 0.012 6.7 7.0 1.5 2 48 735 783 734 786 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-203 - 818 8.9e-09 35.5 86.8 15 15 0.0076 4.3 7.7 2.3 2 48 763 811 762 813 0.75 TFIIH C1-like domain HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 1 9 0.049 28 4.8 5.0 64 94 474 516 442 522 0.57 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 2 9 0.26 1.5e+02 2.5 9.0 49 95 488 545 480 579 0.67 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 3 9 0.0068 3.8 7.6 0.7 64 95 558 601 544 606 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 4 9 0.012 6.8 6.8 3.1 64 94 614 656 574 663 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 5 9 0.0025 1.4 9.0 1.2 64 95 642 685 628 691 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 6 9 0.0029 1.6 8.7 1.3 64 95 670 713 659 721 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 7 9 0.0045 2.5 8.1 1.2 67 95 701 741 685 748 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 8 9 0.0032 1.8 8.6 0.9 64 95 726 769 716 778 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-203 - 818 5.2e-08 32.9 72.3 9 9 0.064 36 4.4 0.1 60 83 778 801 772 810 0.82 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 1 12 0.61 3.4e+02 -0.1 0.0 67 101 265 297 244 304 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 2 12 0.037 21 4.0 0.1 73 106 299 330 260 340 0.72 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 3 12 0.74 4.2e+02 -0.3 0.0 76 103 328 355 320 361 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 4 12 0.018 9.9 5.0 0.1 81 103 361 383 348 399 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 5 12 0.18 99 1.7 0.0 72 101 406 437 399 441 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 6 12 0.26 1.5e+02 1.2 0.0 79 107 443 471 433 506 0.65 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 7 12 1.1 5.9e+02 -0.8 0.0 75 103 495 523 484 539 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 8 12 0.088 49 2.7 0.0 78 103 554 579 526 595 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 9 12 0.046 26 3.7 0.0 80 106 612 638 590 645 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 10 12 0.073 41 3.0 0.1 79 103 667 691 651 704 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 11 12 0.23 1.3e+02 1.4 0.0 72 103 714 747 693 757 0.74 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-203 - 818 9.7e-07 28.1 15.2 12 12 0.16 89 1.9 0.0 79 102 779 802 751 812 0.77 Family of unknown function, FAM178 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 1 10 0.065 36 4.3 0.0 15 40 292 322 291 342 0.80 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 2 10 6.9 3.9e+03 -2.2 0.0 21 37 354 370 352 395 0.76 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 3 10 1.8 1e+03 -0.3 0.0 18 40 407 434 404 453 0.74 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 4 10 0.27 1.5e+02 2.3 0.0 17 37 462 482 460 509 0.81 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 5 10 0.22 1.2e+02 2.6 0.0 17 38 518 539 516 544 0.84 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 6 10 0.076 43 4.1 0.0 17 39 546 573 542 594 0.79 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 7 10 1.2 7e+02 0.2 0.0 22 40 607 630 605 649 0.75 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 8 10 1.2 6.7e+02 0.2 0.0 17 39 658 685 656 706 0.72 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 9 10 0.13 73 3.3 0.0 17 40 714 742 712 763 0.77 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-203 - 818 3.4e-06 26.8 6.2 10 10 4.9 2.7e+03 -1.7 0.0 19 40 772 798 768 814 0.75 Rad4 beta-hairpin domain 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 1 21 0.00042 0.23 11.9 0.9 13 25 255 267 229 268 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 2 21 4.6e-11 2.6e-08 33.9 1.0 1 25 271 295 271 295 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 3 21 1.3e-08 7.3e-06 26.2 2.1 1 26 299 324 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 4 21 4.9e-10 2.8e-07 30.7 1.0 2 24 328 350 327 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 5 21 3.7e-09 2.1e-06 27.9 0.4 1 25 355 379 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 6 21 3e-09 1.7e-06 28.2 0.7 2 25 384 407 383 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 7 21 1.2e-08 6.8e-06 26.3 0.4 4 25 414 435 411 436 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 8 21 8.4e-11 4.7e-08 33.1 1.0 4 25 442 463 439 463 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 9 21 5.1e-08 2.9e-05 24.3 0.4 1 25 467 491 467 492 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 10 21 1.9e-10 1.1e-07 32.0 0.4 2 25 496 519 495 519 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 11 21 7.4e-10 4.1e-07 30.1 0.2 1 25 523 547 523 548 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 12 21 1.1e-09 6.1e-07 29.6 0.8 1 25 551 575 551 576 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 13 21 3.6e-09 2e-06 28.0 0.1 2 25 580 603 579 604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 14 21 3.1e-09 1.7e-06 28.2 3.4 1 26 607 632 607 632 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 15 21 2.9e-10 1.6e-07 31.4 0.8 2 25 636 659 635 659 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 16 21 1.6e-09 8.9e-07 29.1 0.6 1 25 663 687 663 688 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 17 21 2.6e-10 1.4e-07 31.6 1.4 1 25 691 715 691 715 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 18 21 4.1e-10 2.3e-07 30.9 0.6 1 25 719 743 719 744 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 19 21 5.8e-10 3.3e-07 30.4 1.6 1 24 747 770 747 771 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 20 21 5.5e-10 3.1e-07 30.5 0.4 1 25 775 799 775 800 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-208 - 818 6.3e-152 487.9 148.0 21 21 0.00067 0.38 11.3 0.9 1 16 803 818 803 818 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 1 20 8.5e-10 4.7e-07 29.9 1.0 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 2 20 7e-08 3.9e-05 23.9 0.5 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 3 20 5e-08 2.8e-05 24.3 4.8 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 4 20 9.4e-08 5.3e-05 23.5 1.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 5 20 6.8e-08 3.8e-05 23.9 1.4 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 6 20 3.1e-07 0.00017 21.8 0.2 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 7 20 6e-08 3.3e-05 24.1 1.6 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 8 20 2.7e-07 0.00015 22.0 0.8 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 9 20 1.7e-08 9.8e-06 25.8 1.1 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 10 20 6.8e-08 3.8e-05 23.9 0.3 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 11 20 1e-06 0.00058 20.2 2.2 1 23 537 559 537 559 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 12 20 8e-09 4.5e-06 26.8 0.2 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 13 20 7.2e-07 0.0004 20.7 0.5 1 23 593 615 593 615 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 14 20 5e-08 2.8e-05 24.3 4.8 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 15 20 7.7e-07 0.00043 20.6 1.7 1 23 649 671 649 671 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 16 20 1.4e-09 7.6e-07 29.2 2.7 1 23 677 699 677 699 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 17 20 8.3e-08 4.6e-05 23.6 0.3 1 23 705 727 705 727 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 18 20 7.6e-09 4.2e-06 26.9 1.1 1 23 733 755 733 755 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 19 20 3.7e-08 2.1e-05 24.7 0.5 1 23 761 783 761 783 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-208 - 818 4.9e-121 388.9 157.2 20 20 3.3e-09 1.8e-06 28.0 2.5 1 23 789 811 789 811 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 1 20 5.6e-05 0.032 15.1 0.6 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 2 20 0.0003 0.17 12.8 0.4 1 23 285 307 285 308 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 3 20 0.0008 0.45 11.5 3.4 1 23 313 335 313 336 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 4 20 0.0003 0.17 12.8 0.8 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 5 20 3.9e-05 0.022 15.6 1.4 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 6 20 0.0009 0.51 11.3 0.2 1 23 397 419 397 420 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 7 20 3.6e-05 0.02 15.7 1.0 1 23 425 447 425 448 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 8 20 0.00061 0.34 11.9 0.7 1 23 453 475 453 476 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 9 20 2.1e-05 0.012 16.4 0.8 1 23 481 503 481 504 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 10 20 0.0001 0.056 14.3 0.4 1 23 509 531 509 532 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 11 20 4.5e-05 0.025 15.4 1.7 1 23 537 559 537 560 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 12 20 3.1e-06 0.0018 19.0 0.4 1 23 565 587 565 588 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 13 20 0.0001 0.058 14.2 0.3 1 23 593 615 593 616 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 14 20 0.0008 0.45 11.5 3.4 1 23 621 643 621 644 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 15 20 0.00068 0.38 11.7 1.1 1 23 649 671 649 672 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 16 20 2.7e-06 0.0015 19.2 1.8 1 23 677 699 677 700 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 17 20 0.00021 0.12 13.3 0.3 1 23 705 727 705 728 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 18 20 2.5e-05 0.014 16.2 0.7 1 23 733 755 733 756 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 19 20 2.8e-05 0.016 16.0 0.4 1 23 761 783 761 784 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-208 - 818 2.5e-59 192.7 146.1 20 20 7e-05 0.039 14.8 1.9 1 23 789 811 789 812 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 1 20 7.9e-05 0.044 13.8 0.8 2 25 257 280 257 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 2 20 0.00099 0.56 10.3 0.8 2 11 285 294 285 297 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 3 20 0.0011 0.63 10.1 1.6 2 12 313 323 313 336 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 4 20 0.0013 0.7 10.0 0.5 2 20 341 359 341 362 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 5 20 0.021 12 6.1 2.7 2 12 369 379 369 390 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 6 20 0.0053 3 8.0 0.7 2 12 397 407 397 408 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 7 20 2.6e-05 0.015 15.3 0.9 2 24 425 447 425 450 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 8 20 0.00034 0.19 11.8 0.8 2 20 453 471 453 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 9 20 0.0012 0.66 10.1 0.5 2 12 481 491 481 503 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 10 20 0.00049 0.27 11.3 0.6 2 24 509 531 509 534 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 11 20 0.16 91 3.2 4.3 2 13 537 548 537 558 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 12 20 0.0017 0.93 9.6 0.6 2 11 565 574 565 576 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 13 20 0.44 2.4e+02 1.9 0.2 2 12 593 603 593 613 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 14 20 0.0011 0.63 10.1 1.6 2 12 621 631 621 644 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 15 20 1.4e-05 0.0076 16.2 1.6 2 21 649 668 649 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 16 20 0.011 6.4 6.9 3.4 2 12 677 687 677 700 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 17 20 0.00067 0.37 10.8 0.3 2 22 705 725 705 729 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 18 20 0.0076 4.2 7.5 3.7 2 12 733 743 733 754 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 19 20 2.9e-05 0.016 15.2 0.2 2 24 761 783 761 786 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-208 - 818 6.2e-32 109.0 155.0 20 20 0.00022 0.12 12.4 1.3 1 22 788 809 788 813 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 1 20 0.00016 0.089 12.9 4.2 6 35 257 293 256 297 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 2 20 0.00023 0.13 12.4 4.4 6 34 285 320 283 320 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 3 20 7e-05 0.039 14.1 3.8 6 36 313 350 312 354 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 4 20 0.001 0.57 10.3 3.7 6 34 341 376 340 382 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 5 20 0.051 29 4.9 0.3 6 16 369 379 368 389 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 6 20 3.6e-05 0.02 15.0 3.0 6 34 397 432 396 435 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 7 20 0.00017 0.094 12.8 4.0 6 34 425 460 424 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 8 20 0.014 7.8 6.7 4.5 6 33 453 487 451 492 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 9 20 0.0018 1 9.5 3.9 6 34 481 516 480 521 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 10 20 9.8e-05 0.055 13.6 2.8 6 35 509 545 508 549 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 11 20 0.0036 2 8.6 4.4 6 34 537 572 535 576 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 12 20 0.0059 3.3 7.9 0.4 6 16 565 575 563 584 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 13 20 0.00022 0.12 12.5 4.0 6 34 593 628 592 632 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 14 20 0.00015 0.087 13.0 4.3 6 34 621 656 620 660 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 15 20 0.01 5.7 7.1 0.3 6 16 649 659 648 669 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 16 20 4.3e-05 0.024 14.7 3.6 6 34 677 712 676 717 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 17 20 0.00086 0.48 10.6 0.2 6 21 705 720 704 728 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 18 20 5.2e-05 0.029 14.5 4.1 6 36 733 770 732 773 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 19 20 0.0017 0.93 9.7 0.3 6 20 761 775 760 781 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-208 - 818 3.2e-28 97.6 103.9 20 20 0.0025 1.4 9.1 0.1 6 17 789 800 788 813 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 1 20 0.00096 0.54 10.1 0.1 5 26 257 278 255 279 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 2 20 0.013 7.3 6.5 0.1 5 24 285 304 282 307 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 3 20 0.1 57 3.6 0.4 5 26 313 334 310 335 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 4 20 0.19 1e+02 2.8 0.1 5 23 341 359 338 363 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 5 20 0.04 22 4.9 0.1 5 26 369 390 366 391 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 6 20 0.0025 1.4 8.7 0.1 5 26 397 418 394 419 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 7 20 0.016 8.8 6.2 0.1 5 26 425 446 422 447 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 8 20 0.01 5.8 6.8 0.1 5 26 453 474 450 475 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 9 20 0.044 25 4.7 0.2 5 26 481 502 479 503 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 10 20 0.0011 0.6 9.9 0.1 5 26 509 530 506 531 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 11 20 0.0012 0.68 9.7 0.6 5 26 537 558 534 559 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 12 20 0.0018 1 9.2 0.0 5 25 565 585 562 587 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 13 20 0.0023 1.3 8.9 0.1 5 25 593 613 590 615 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 14 20 0.1 57 3.6 0.4 5 26 621 642 618 643 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 15 20 0.01 5.6 6.8 0.1 5 26 649 670 646 671 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 16 20 0.035 19 5.1 0.2 5 23 677 695 674 698 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 17 20 0.00083 0.47 10.3 0.1 5 26 705 726 702 727 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 18 20 0.00099 0.55 10.0 0.1 5 26 733 754 731 755 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 19 20 0.00046 0.26 11.1 0.1 5 26 761 782 758 783 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-208 - 818 4.1e-26 90.4 84.1 20 20 0.48 2.7e+02 1.5 0.7 5 22 789 806 787 811 0.72 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF160-208 - 818 1.1e-25 89.0 0.1 1 1 3.4e-28 1.9e-25 88.2 0.1 2 42 8 48 7 48 0.98 KRAB box XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 1 20 0.019 11 6.2 0.1 3 12 258 267 256 274 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 2 20 0.032 18 5.5 0.1 3 12 286 295 284 296 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 3 20 0.012 6.5 6.9 0.0 3 18 314 330 312 331 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 4 20 0.036 20 5.3 0.1 3 11 342 350 340 358 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 5 20 0.042 23 5.1 0.1 3 13 370 380 368 390 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 6 20 0.036 20 5.3 0.1 3 12 398 407 396 408 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 7 20 0.053 30 4.8 0.0 3 16 426 440 424 443 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 8 20 0.027 15 5.7 0.1 3 12 454 463 452 471 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 9 20 0.12 66 3.7 0.2 3 13 482 492 480 499 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 10 20 0.03 17 5.5 0.0 3 12 510 519 508 526 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 11 20 0.014 8.1 6.6 0.1 3 13 538 548 536 555 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 12 20 0.019 11 6.2 0.0 3 17 566 581 564 587 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 13 20 0.11 60 3.8 0.1 3 13 594 604 592 606 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 14 20 0.012 6.5 6.9 0.0 3 18 622 638 620 639 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 15 20 0.027 15 5.7 0.1 3 12 650 659 648 667 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 16 20 0.3 1.7e+02 2.4 0.0 3 12 678 687 676 695 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 17 20 0.051 29 4.8 0.0 3 12 706 715 704 722 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 18 20 0.091 51 4.0 0.1 3 12 734 743 732 748 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 19 20 0.069 39 4.4 0.0 3 11 762 770 760 778 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-208 - 818 1.5e-21 76.1 60.7 20 20 0.028 16 5.7 0.1 3 14 790 801 788 804 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 1 20 0.013 7.2 6.3 0.1 3 20 257 275 255 276 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 2 20 0.0065 3.6 7.3 0.1 3 14 285 296 283 304 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 3 20 0.048 27 4.5 0.2 3 15 313 325 311 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 4 20 0.032 18 5.0 0.1 3 21 341 360 339 360 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 5 20 0.099 55 3.5 0.2 3 15 369 381 367 387 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 6 20 0.023 13 5.5 0.1 3 15 397 409 395 416 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 7 20 0.12 66 3.2 0.2 3 12 425 434 423 438 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 8 20 0.0014 0.76 9.4 0.2 3 21 453 472 451 472 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 9 20 0.097 54 3.5 0.1 3 20 481 499 479 500 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 10 20 0.0046 2.6 7.7 0.1 3 21 509 528 507 528 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 11 20 0.1 59 3.4 0.3 3 15 537 549 535 556 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 12 20 0.0079 4.4 7.0 0.1 3 18 565 581 563 583 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 13 20 0.15 83 2.9 0.1 3 15 593 605 591 612 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 14 20 0.048 27 4.5 0.2 3 15 621 633 619 640 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 15 20 0.0022 1.3 8.7 0.2 3 20 649 667 647 668 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 16 20 0.032 18 5.0 0.2 3 16 677 691 675 696 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 17 20 0.0069 3.9 7.2 0.1 3 21 705 724 703 724 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 18 20 0.032 18 5.1 0.1 3 15 733 745 731 752 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 19 20 0.031 17 5.1 0.0 3 20 761 779 759 780 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-208 - 818 7.4e-18 63.8 79.8 20 20 0.0066 3.7 7.2 0.2 2 20 788 807 787 808 0.88 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 1 18 0.0032 1.8 8.5 1.0 9 37 254 293 247 297 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 2 18 0.0027 1.5 8.8 1.4 9 38 282 322 274 326 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 3 18 0.019 11 6.0 3.0 1 36 303 348 303 350 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 4 18 0.018 10 6.1 2.9 9 36 338 376 330 378 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 5 18 0.0041 2.3 8.2 3.2 1 36 359 404 359 406 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 6 18 0.00019 0.1 12.5 1.0 2 37 387 433 386 437 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 7 18 0.0021 1.2 9.1 0.9 4 36 418 460 414 462 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 8 18 0.0023 1.3 9.0 1.6 4 37 446 489 443 493 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 9 18 0.016 9.2 6.2 2.3 1 37 471 517 471 521 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 10 18 0.015 8.1 6.4 1.9 9 37 506 545 498 549 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 11 18 0.015 8.7 6.3 2.0 9 37 534 573 527 576 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 12 18 0.00078 0.44 10.5 0.4 9 38 562 602 554 605 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 13 18 0.00023 0.13 12.2 0.7 2 38 583 630 582 634 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 14 18 0.014 8 6.4 2.2 5 36 615 656 611 662 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 15 18 0.0055 3.1 7.8 2.1 9 37 646 685 638 689 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 16 18 0.0034 1.9 8.4 4.3 9 37 674 713 667 747 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 17 18 0.0012 0.67 9.9 0.6 4 37 726 769 723 773 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-208 - 818 6.6e-15 54.7 76.4 18 18 0.0017 0.93 9.4 0.3 9 37 758 797 747 801 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 1 15 0.0061 3.4 8.5 3.6 36 76 255 295 225 300 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 2 15 0.0047 2.6 8.8 1.2 34 76 309 351 300 359 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 3 15 0.0015 0.86 10.4 0.8 35 75 366 406 359 412 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 4 15 0.002 1.1 10.0 1.2 33 76 420 463 412 471 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 5 15 0.0025 1.4 9.7 2.3 35 75 478 518 468 524 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 6 15 0.007 3.9 8.3 1.8 32 78 503 549 499 552 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 7 15 0.029 16 6.3 1.9 35 77 534 576 525 583 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 8 15 0.00085 0.48 11.2 0.7 35 77 562 604 556 608 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 9 15 0.0004 0.22 12.3 0.7 29 78 584 633 579 639 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 10 15 0.0045 2.5 8.9 1.4 34 76 617 659 608 667 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 11 15 0.0015 0.83 10.4 2.0 32 78 643 689 635 692 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 12 15 0.00032 0.18 12.6 2.1 34 75 673 714 663 720 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 13 15 0.0058 3.2 8.5 2.4 35 78 702 745 694 751 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 14 15 0.0014 0.81 10.5 1.5 33 75 728 770 719 779 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-208 - 818 1.4e-11 44.9 83.7 15 15 0.0022 1.2 9.9 1.5 33 79 756 802 752 807 0.86 zinc-ribbon family HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 1 13 0.15 82 3.2 0.1 32 50 257 277 254 279 0.66 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 2 13 0.001 0.59 10.1 0.3 1 42 283 323 283 334 0.82 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 3 13 0.011 6.4 6.8 0.6 1 50 339 389 339 391 0.76 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 4 13 0.0094 5.3 7.0 0.3 1 41 395 434 395 446 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 5 13 0.0041 2.3 8.2 0.1 1 42 451 491 451 503 0.83 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 6 13 0.057 32 4.5 0.3 2 40 480 517 479 531 0.72 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 7 13 0.11 61 3.6 0.7 2 40 508 545 507 558 0.67 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 8 13 0.0039 2.2 8.3 1.0 1 45 535 578 535 587 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 9 13 0.11 63 3.6 1.0 2 41 592 630 591 642 0.69 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 10 13 0.00018 0.099 12.6 0.3 1 50 647 697 647 699 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 11 13 0.0099 5.6 7.0 0.8 1 42 703 743 703 755 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 12 13 0.011 6.1 6.8 0.8 2 40 732 769 731 782 0.75 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-208 - 818 3.1e-11 43.0 60.4 13 13 0.0015 0.84 9.6 0.9 1 50 759 809 759 811 0.75 Halobacterial output domain 2 C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 1 15 0.1 57 4.1 0.2 19 48 250 279 240 282 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 2 15 5.2e-05 0.029 14.6 1.2 1 49 258 308 258 310 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 3 15 0.23 1.3e+02 2.9 2.7 2 48 315 363 314 366 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 4 15 0.098 55 4.1 2.0 1 44 342 387 342 394 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 5 15 0.0009 0.51 10.6 1.2 2 49 371 420 370 422 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 6 15 0.029 16 5.8 2.3 20 49 447 476 426 480 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 7 15 0.001 0.56 10.5 1.5 1 49 482 532 482 534 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 8 15 0.011 6 7.2 1.1 1 35 538 574 538 588 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 9 15 1 5.9e+02 0.8 0.2 23 37 590 604 574 617 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 10 15 0.45 2.5e+02 2.0 2.9 2 36 595 631 594 645 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 11 15 0.015 8.4 6.7 3.2 2 49 623 672 622 674 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 12 15 0.00057 0.32 11.3 1.6 2 49 679 728 678 731 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 13 15 0.16 92 3.4 0.3 20 48 727 755 719 758 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 14 15 0.012 6.7 7.0 1.5 2 48 735 783 734 786 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-208 - 818 8.9e-09 35.5 86.8 15 15 0.0076 4.3 7.7 2.3 2 48 763 811 762 813 0.75 TFIIH C1-like domain HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 1 9 0.049 28 4.8 5.0 64 94 474 516 442 522 0.57 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 2 9 0.26 1.5e+02 2.5 9.0 49 95 488 545 480 579 0.67 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 3 9 0.0068 3.8 7.6 0.7 64 95 558 601 544 606 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 4 9 0.012 6.8 6.8 3.1 64 94 614 656 574 663 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 5 9 0.0025 1.4 9.0 1.2 64 95 642 685 628 691 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 6 9 0.0029 1.6 8.7 1.3 64 95 670 713 659 721 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 7 9 0.0045 2.5 8.1 1.2 67 95 701 741 685 748 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 8 9 0.0032 1.8 8.6 0.9 64 95 726 769 716 778 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-208 - 818 5.2e-08 32.9 72.3 9 9 0.064 36 4.4 0.1 60 83 778 801 772 810 0.82 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 1 12 0.61 3.4e+02 -0.1 0.0 67 101 265 297 244 304 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 2 12 0.037 21 4.0 0.1 73 106 299 330 260 340 0.72 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 3 12 0.74 4.2e+02 -0.3 0.0 76 103 328 355 320 361 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 4 12 0.018 9.9 5.0 0.1 81 103 361 383 348 399 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 5 12 0.18 99 1.7 0.0 72 101 406 437 399 441 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 6 12 0.26 1.5e+02 1.2 0.0 79 107 443 471 433 506 0.65 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 7 12 1.1 5.9e+02 -0.8 0.0 75 103 495 523 484 539 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 8 12 0.088 49 2.7 0.0 78 103 554 579 526 595 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 9 12 0.046 26 3.7 0.0 80 106 612 638 590 645 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 10 12 0.073 41 3.0 0.1 79 103 667 691 651 704 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 11 12 0.23 1.3e+02 1.4 0.0 72 103 714 747 693 757 0.74 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-208 - 818 9.7e-07 28.1 15.2 12 12 0.16 89 1.9 0.0 79 102 779 802 751 812 0.77 Family of unknown function, FAM178 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 1 10 0.065 36 4.3 0.0 15 40 292 322 291 342 0.80 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 2 10 6.9 3.9e+03 -2.2 0.0 21 37 354 370 352 395 0.76 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 3 10 1.8 1e+03 -0.3 0.0 18 40 407 434 404 453 0.74 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 4 10 0.27 1.5e+02 2.3 0.0 17 37 462 482 460 509 0.81 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 5 10 0.22 1.2e+02 2.6 0.0 17 38 518 539 516 544 0.84 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 6 10 0.076 43 4.1 0.0 17 39 546 573 542 594 0.79 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 7 10 1.2 7e+02 0.2 0.0 22 40 607 630 605 649 0.75 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 8 10 1.2 6.7e+02 0.2 0.0 17 39 658 685 656 706 0.72 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 9 10 0.13 73 3.3 0.0 17 40 714 742 712 763 0.77 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-208 - 818 3.4e-06 26.8 6.2 10 10 4.9 2.7e+03 -1.7 0.0 19 40 772 798 768 814 0.75 Rad4 beta-hairpin domain 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 1 21 0.00042 0.22 12.0 0.9 13 25 219 231 193 232 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 2 21 4.7e-11 2.5e-08 34.0 1.0 1 25 235 259 235 259 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 3 21 1.3e-08 6.9e-06 26.3 2.1 1 26 263 288 263 288 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 4 21 5e-10 2.6e-07 30.7 1.0 2 24 292 314 291 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 5 21 3.8e-09 2e-06 28.0 0.4 1 25 319 343 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 6 21 3.1e-09 1.6e-06 28.3 0.7 2 25 348 371 347 371 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 7 21 1.2e-08 6.4e-06 26.4 0.4 4 25 378 399 375 400 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 8 21 8.5e-11 4.5e-08 33.2 1.0 4 25 406 427 403 427 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 9 21 5.2e-08 2.7e-05 24.4 0.4 1 25 431 455 431 456 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 10 21 1.9e-10 1e-07 32.1 0.4 2 25 460 483 459 483 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 11 21 7.5e-10 3.9e-07 30.2 0.2 1 25 487 511 487 512 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 12 21 1.1e-09 5.8e-07 29.6 0.8 1 25 515 539 515 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 13 21 3.6e-09 1.9e-06 28.0 0.1 2 25 544 567 543 568 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 14 21 3.1e-09 1.6e-06 28.2 3.4 1 26 571 596 571 596 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 15 21 2.9e-10 1.5e-07 31.5 0.8 2 25 600 623 599 623 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 16 21 1.6e-09 8.5e-07 29.1 0.6 1 25 627 651 627 652 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 17 21 2.6e-10 1.4e-07 31.6 1.4 1 25 655 679 655 679 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 18 21 4.2e-10 2.2e-07 31.0 0.6 1 25 683 707 683 708 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 19 21 5.9e-10 3.1e-07 30.5 1.6 1 24 711 734 711 735 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 20 21 5.6e-10 2.9e-07 30.6 0.4 1 25 739 763 739 764 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF160-214 - 782 2.1e-152 489.4 148.0 21 21 0.00068 0.36 11.3 0.9 1 16 767 782 767 782 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 1 20 8.5e-10 4.5e-07 30.0 1.0 1 23 221 243 221 243 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 2 20 7.1e-08 3.7e-05 23.9 0.5 1 23 249 271 249 271 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 3 20 5e-08 2.7e-05 24.4 4.8 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 4 20 9.5e-08 5e-05 23.5 1.2 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 5 20 6.8e-08 3.6e-05 24.0 1.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 6 20 3.1e-07 0.00017 21.9 0.2 1 23 361 383 361 383 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 7 20 6e-08 3.2e-05 24.1 1.6 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 8 20 2.7e-07 0.00014 22.1 0.8 1 23 417 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 9 20 1.8e-08 9.3e-06 25.8 1.1 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 10 20 6.9e-08 3.6e-05 24.0 0.3 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 11 20 1e-06 0.00055 20.3 2.2 1 23 501 523 501 523 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 12 20 8.1e-09 4.3e-06 26.9 0.2 1 23 529 551 529 551 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 13 20 7.3e-07 0.00038 20.7 0.5 1 23 557 579 557 579 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 14 20 5e-08 2.7e-05 24.4 4.8 1 23 585 607 585 607 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 15 20 7.8e-07 0.00041 20.6 1.7 1 23 613 635 613 635 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 16 20 1.4e-09 7.2e-07 29.3 2.7 1 23 641 663 641 663 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 17 20 8.3e-08 4.4e-05 23.7 0.3 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 18 20 7.6e-09 4e-06 27.0 1.1 1 23 697 719 697 719 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 19 20 3.7e-08 2e-05 24.8 0.5 1 23 725 747 725 747 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF160-214 - 782 1.7e-121 390.3 157.2 20 20 3.3e-09 1.8e-06 28.1 2.5 1 23 753 775 753 775 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 1 20 5.7e-05 0.03 15.1 0.6 1 23 221 243 221 244 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 2 20 0.0003 0.16 12.9 0.4 1 23 249 271 249 272 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 3 20 0.00081 0.43 11.6 3.4 1 23 277 299 277 300 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 4 20 0.0003 0.16 12.9 0.8 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 5 20 3.9e-05 0.02 15.7 1.4 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 6 20 0.00091 0.48 11.4 0.2 1 23 361 383 361 384 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 7 20 3.6e-05 0.019 15.8 1.0 1 23 389 411 389 412 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 8 20 0.00062 0.33 11.9 0.7 1 23 417 439 417 440 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 9 20 2.1e-05 0.011 16.5 0.8 1 23 445 467 445 468 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 10 20 0.0001 0.053 14.4 0.4 1 23 473 495 473 496 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 11 20 4.6e-05 0.024 15.4 1.7 1 23 501 523 501 524 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 12 20 3.2e-06 0.0017 19.1 0.4 1 23 529 551 529 552 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 13 20 0.00011 0.055 14.3 0.3 1 23 557 579 557 580 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 14 20 0.00081 0.43 11.6 3.4 1 23 585 607 585 608 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 15 20 0.00069 0.36 11.8 1.1 1 23 613 635 613 636 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 16 20 2.8e-06 0.0015 19.2 1.8 1 23 641 663 641 664 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 17 20 0.00021 0.11 13.4 0.3 1 23 669 691 669 692 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 18 20 2.5e-05 0.013 16.3 0.7 1 23 697 719 697 720 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 19 20 2.9e-05 0.015 16.1 0.4 1 23 725 747 725 748 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF160-214 - 782 9.1e-60 194.1 146.2 20 20 7.1e-05 0.037 14.8 1.9 1 23 753 775 753 776 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 1 20 8e-05 0.042 13.9 0.8 2 25 221 244 221 246 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 2 20 0.001 0.53 10.4 0.8 2 11 249 258 249 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 3 20 0.0011 0.6 10.2 1.6 2 12 277 287 277 300 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 4 20 0.0013 0.67 10.0 0.5 2 20 305 323 305 326 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 5 20 0.02 11 6.2 2.7 2 12 333 343 333 354 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 6 20 0.0054 2.8 8.0 0.7 2 12 361 371 361 372 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 7 20 2.7e-05 0.014 15.4 0.9 2 24 389 411 389 414 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 8 20 0.00035 0.18 11.8 0.8 2 20 417 435 417 439 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 9 20 0.0012 0.62 10.1 0.5 2 12 445 455 445 467 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 10 20 0.00049 0.26 11.3 0.6 2 24 473 495 473 498 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 11 20 0.16 85 3.3 4.3 2 13 501 512 501 522 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 12 20 0.0017 0.88 9.6 0.6 2 11 529 538 529 540 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 13 20 0.44 2.3e+02 1.9 0.2 2 12 557 567 557 577 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 14 20 0.0011 0.6 10.2 1.6 2 12 585 595 585 608 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 15 20 1.4e-05 0.0072 16.3 1.6 2 21 613 632 613 635 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 16 20 0.011 6 7.0 3.4 2 12 641 651 641 664 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 17 20 0.00067 0.35 10.9 0.3 2 22 669 689 669 693 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 18 20 0.0078 4.1 7.5 3.7 2 12 697 707 697 718 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 19 20 3e-05 0.016 15.2 0.2 2 24 725 747 725 750 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF160-214 - 782 2e-32 110.6 154.9 20 20 0.00022 0.12 12.5 1.3 1 22 752 773 752 777 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 1 20 0.00019 0.099 12.8 4.5 6 35 221 257 220 261 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 2 20 0.0017 0.88 9.7 0.3 6 19 249 262 248 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 3 20 7.3e-05 0.038 14.1 3.8 6 36 277 314 276 318 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 4 20 0.00091 0.48 10.6 3.6 6 34 305 340 304 345 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 5 20 0.053 28 4.9 0.3 6 16 333 343 332 352 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 6 20 3.6e-05 0.019 15.1 3.0 6 34 361 396 360 399 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 7 20 0.00023 0.12 12.5 4.4 6 34 389 424 388 427 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 8 20 0.015 7.8 6.7 4.5 6 33 417 451 416 456 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 9 20 0.0039 2 8.6 4.3 6 34 445 480 444 482 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 10 20 9.9e-05 0.052 13.7 2.9 6 36 473 510 472 514 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 11 20 0.0075 4 7.7 4.7 6 34 501 536 500 536 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 12 20 0.0061 3.2 7.9 0.4 6 16 529 539 527 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 13 20 0.00023 0.12 12.5 4.1 6 34 557 592 556 596 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 14 20 0.00017 0.087 13.0 4.4 6 34 585 620 584 624 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 15 20 0.01 5.5 7.2 0.4 6 16 613 623 612 633 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 16 20 0.00015 0.081 13.1 4.0 6 34 641 676 640 676 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 17 20 0.00088 0.47 10.6 0.2 6 21 669 684 668 692 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 18 20 4.6e-05 0.024 14.7 4.0 6 36 697 734 696 738 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 19 20 0.0017 0.88 9.7 0.3 6 20 725 739 723 745 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF160-214 - 782 3.1e-28 97.6 105.1 20 20 0.0025 1.3 9.2 0.1 6 17 753 764 752 777 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 1 20 0.00097 0.51 10.1 0.1 5 26 221 242 219 243 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 2 20 0.013 6.9 6.5 0.1 5 24 249 268 246 271 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 3 20 0.1 54 3.7 0.4 5 26 277 298 274 299 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 4 20 0.19 99 2.8 0.1 5 23 305 323 302 327 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 5 20 0.04 21 5.0 0.1 5 26 333 354 330 355 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 6 20 0.0025 1.3 8.8 0.1 5 26 361 382 358 383 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 7 20 0.016 8.4 6.3 0.1 5 26 389 410 386 411 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 8 20 0.01 5.5 6.8 0.1 5 26 417 438 414 439 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 9 20 0.045 24 4.8 0.2 5 26 445 466 443 467 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 10 20 0.0011 0.57 10.0 0.1 5 26 473 494 470 495 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 11 20 0.0012 0.65 9.8 0.6 5 26 501 522 498 523 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 12 20 0.0018 0.96 9.3 0.0 5 25 529 549 526 551 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 13 20 0.0023 1.2 8.9 0.1 5 25 557 577 554 579 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 14 20 0.1 54 3.7 0.4 5 26 585 606 582 607 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 15 20 0.01 5.4 6.9 0.1 5 26 613 634 610 635 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 16 20 0.035 18 5.2 0.2 5 23 641 659 638 662 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 17 20 0.00084 0.44 10.3 0.1 5 26 669 690 666 691 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 18 20 0.001 0.53 10.1 0.1 5 26 697 718 695 719 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 19 20 0.00046 0.25 11.2 0.1 5 26 725 746 722 747 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF160-214 - 782 1.5e-26 91.8 84.1 20 20 0.48 2.5e+02 1.5 0.7 5 22 753 770 751 775 0.72 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 1 20 0.019 10 6.3 0.1 3 12 222 231 220 238 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 2 20 0.032 17 5.5 0.1 3 12 250 259 248 260 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 3 20 0.012 6.1 7.0 0.0 3 18 278 294 276 295 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 4 20 0.037 19 5.4 0.1 3 11 306 314 304 322 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 5 20 0.042 22 5.2 0.1 3 13 334 344 332 354 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 6 20 0.037 19 5.4 0.1 3 12 362 371 360 372 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 7 20 0.054 28 4.8 0.0 3 16 390 404 388 407 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 8 20 0.028 15 5.8 0.1 3 12 418 427 416 435 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 9 20 0.12 63 3.7 0.2 3 13 446 456 444 463 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 10 20 0.031 16 5.6 0.0 3 12 474 483 472 490 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 11 20 0.015 7.7 6.7 0.1 3 13 502 512 500 519 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 12 20 0.019 10 6.3 0.0 3 17 530 545 528 551 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 13 20 0.11 57 3.9 0.1 3 13 558 568 556 570 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 14 20 0.012 6.1 7.0 0.0 3 18 586 602 584 603 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 15 20 0.027 14 5.8 0.1 3 12 614 623 612 631 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 16 20 0.31 1.6e+02 2.4 0.0 3 12 642 651 640 659 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 17 20 0.052 27 4.9 0.0 3 12 670 679 668 686 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 18 20 0.092 49 4.1 0.1 3 12 698 707 696 712 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 19 20 0.07 37 4.5 0.0 3 11 726 734 724 742 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF160-214 - 782 5.8e-22 77.4 60.7 20 20 0.029 15 5.7 0.1 3 14 754 765 752 768 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 1 20 0.013 6.9 6.4 0.1 3 20 221 239 219 240 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 2 20 0.0065 3.5 7.3 0.1 3 14 249 260 247 268 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 3 20 0.048 26 4.5 0.2 3 15 277 289 275 296 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 4 20 0.033 17 5.1 0.1 3 21 305 324 303 324 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 5 20 0.1 53 3.5 0.2 3 15 333 345 331 351 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 6 20 0.023 12 5.6 0.1 3 15 361 373 359 380 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 7 20 0.12 63 3.3 0.2 3 12 389 398 387 402 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 8 20 0.0014 0.72 9.5 0.2 3 21 417 436 415 436 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 9 20 0.098 52 3.6 0.1 3 20 445 463 443 464 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 10 20 0.0047 2.5 7.8 0.1 3 21 473 492 471 492 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 11 20 0.11 56 3.5 0.3 3 15 501 513 499 520 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 12 20 0.008 4.2 7.0 0.1 3 18 529 545 527 547 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 13 20 0.15 79 3.0 0.1 3 15 557 569 555 576 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 14 20 0.048 26 4.5 0.2 3 15 585 597 583 604 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 15 20 0.0023 1.2 8.8 0.2 3 20 613 631 611 632 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 16 20 0.032 17 5.1 0.2 3 16 641 655 639 660 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 17 20 0.007 3.7 7.2 0.1 3 21 669 688 667 688 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 18 20 0.032 17 5.1 0.1 3 15 697 709 695 716 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 19 20 0.031 16 5.1 0.0 3 20 725 743 723 744 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF160-214 - 782 2.8e-18 65.2 79.8 20 20 0.0066 3.5 7.3 0.2 2 20 752 771 751 772 0.88 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 1 19 0.0032 1.7 8.6 1.0 9 37 218 257 211 261 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 2 19 0.0025 1.3 9.0 1.4 9 38 246 286 238 297 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 3 19 0.024 13 5.8 3.3 1 36 267 312 267 314 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 4 19 0.02 11 6.0 3.0 9 36 302 340 295 342 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 5 19 0.041 22 5.1 0.4 1 22 323 343 323 350 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 6 19 0.00018 0.094 12.6 0.9 2 37 351 397 350 401 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 7 19 0.0019 1 9.3 0.9 4 36 382 424 379 429 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 8 19 0.0026 1.4 8.9 1.8 4 37 410 453 406 457 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 9 19 0.015 7.8 6.5 2.1 1 37 435 481 435 485 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 10 19 0.012 6.6 6.7 1.7 9 37 470 509 462 513 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 11 19 0.015 7.9 6.5 2.0 9 37 498 537 491 541 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 12 19 0.00078 0.41 10.6 0.5 9 38 526 566 515 569 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 13 19 0.00024 0.13 12.2 0.8 2 38 547 594 546 598 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 14 19 0.018 9.4 6.2 2.6 5 37 579 621 575 627 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 15 19 0.0086 4.5 7.2 2.3 9 37 610 649 603 650 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 16 19 0.00055 0.29 11.0 0.9 3 37 633 677 631 681 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 17 19 0.00078 0.41 10.6 0.7 6 38 664 706 658 711 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 18 19 0.0018 0.95 9.4 0.9 4 36 690 732 687 734 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF160-214 - 782 7.7e-15 54.5 77.6 19 19 0.0018 0.97 9.4 0.3 9 37 722 761 715 765 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 1 14 0.0067 3.5 8.4 3.8 36 76 219 259 189 266 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 2 14 0.0046 2.4 8.9 1.3 34 76 273 315 263 323 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 3 14 0.0015 0.78 10.5 0.7 35 75 330 370 324 377 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 4 14 0.002 1 10.1 1.2 33 76 384 427 375 435 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 5 14 0.0025 1.3 9.8 2.4 35 76 442 483 432 491 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 6 14 0.0086 4.5 8.1 2.2 32 78 467 513 462 519 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 7 14 0.031 16 6.3 1.9 35 77 498 540 490 546 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 8 14 0.00079 0.41 11.4 0.6 35 77 526 568 521 574 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 9 14 0.0004 0.21 12.3 0.5 29 78 548 597 544 600 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 10 14 0.0042 2.2 9.1 1.4 34 76 581 623 570 631 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 11 14 0.0015 0.81 10.5 2.2 32 79 607 654 598 659 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 12 14 0.00034 0.18 12.6 2.3 34 76 637 679 627 687 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 13 14 0.0054 2.8 8.7 2.3 35 78 666 709 658 715 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF160-214 - 782 6.7e-12 46.0 83.4 14 14 0.018 9.3 7.1 6.0 39 75 698 734 688 771 0.52 zinc-ribbon family HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 1 13 0.15 78 3.3 0.1 32 50 221 241 218 243 0.66 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 2 13 0.00098 0.52 10.3 0.3 1 42 247 287 247 299 0.81 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 3 13 0.012 6.4 6.8 0.7 1 50 303 353 303 355 0.76 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 4 13 0.0097 5.1 7.1 0.3 1 41 359 398 359 410 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 5 13 0.0042 2.2 8.2 0.2 1 42 415 455 415 467 0.83 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 6 13 0.059 31 4.6 0.4 2 40 444 481 443 495 0.72 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 7 13 0.11 59 3.7 0.8 2 40 472 509 471 523 0.67 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 8 13 0.0039 2 8.4 0.9 1 45 499 542 499 551 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 9 13 0.12 62 3.6 1.0 2 41 556 594 555 606 0.69 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 10 13 0.00018 0.094 12.6 0.3 1 50 611 661 611 663 0.86 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 11 13 0.01 5.5 7.0 0.8 1 42 667 707 667 719 0.73 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 12 13 0.012 6.3 6.8 0.9 2 40 696 733 695 745 0.75 Halobacterial output domain 2 HalOD2 PF18547.1 52 ZNF160-214 - 782 2.5e-11 43.3 61.0 13 13 0.0014 0.75 9.8 0.8 1 50 723 773 723 775 0.75 Halobacterial output domain 2 C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 1 16 0.095 50 4.2 0.1 19 48 214 243 203 246 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 2 16 4.8e-05 0.025 14.8 1.1 1 49 222 272 222 275 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 3 16 0.24 1.3e+02 3.0 2.7 2 48 279 327 278 330 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 4 16 0.1 53 4.2 2.0 1 44 306 351 306 358 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 5 16 0.00091 0.48 10.7 1.2 2 49 335 384 334 387 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 6 16 0.1 53 4.2 2.2 2 49 363 384 362 412 0.57 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 7 16 0.034 18 5.7 2.5 20 49 411 440 390 443 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 8 16 0.00096 0.51 10.6 1.5 1 49 446 496 446 498 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 9 16 0.01 5.5 7.3 1.1 1 35 502 538 502 552 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 10 16 1 5.3e+02 1.0 0.1 23 46 554 577 539 582 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 11 16 0.63 3.3e+02 1.6 3.3 2 35 559 594 558 608 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 12 16 0.014 7.4 6.9 3.2 2 49 587 636 586 640 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 13 16 0.00065 0.34 11.2 1.8 2 49 643 692 642 695 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 14 16 0.014 7.5 6.9 1.8 2 48 671 719 670 722 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 15 16 0.014 7.1 6.9 1.6 2 48 699 747 697 749 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF160-214 - 782 4.8e-09 36.3 86.9 16 16 0.009 4.8 7.5 2.5 2 48 727 775 726 777 0.75 TFIIH C1-like domain HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 1 13 0.011 5.8 7.0 1.7 71 95 221 257 202 266 0.81 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 2 13 0.034 18 5.4 5.3 51 94 230 284 216 296 0.64 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 3 13 0.09 47 4.0 6.8 72 94 306 340 260 373 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 4 13 0.011 5.7 7.0 3.0 70 95 360 397 348 431 0.62 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 5 13 0.034 18 5.4 4.5 64 94 438 480 405 487 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 6 13 0.009 4.8 7.2 3.0 50 95 453 509 449 515 0.72 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 7 13 0.012 6.2 6.9 0.8 64 95 494 537 482 544 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 8 13 0.0064 3.4 7.7 0.6 64 95 522 565 508 571 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 9 13 0.012 6.1 6.9 2.9 64 94 578 620 538 626 0.53 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 10 13 0.0025 1.3 9.0 1.2 64 95 606 649 592 655 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 11 13 0.0033 1.8 8.6 1.3 65 95 635 677 626 687 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 12 13 0.012 6.2 6.9 4.0 63 93 689 731 649 740 0.55 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF160-214 - 782 2.8e-08 33.8 72.1 13 13 0.067 35 4.5 0.1 60 83 742 765 736 773 0.82 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 1 12 0.52 2.7e+02 0.3 0.0 67 102 229 262 208 270 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 2 12 0.067 35 3.2 0.1 80 107 268 295 256 304 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 3 12 1.4 7.4e+02 -1.1 0.0 80 103 296 319 291 325 0.84 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 4 12 0.018 9.4 5.1 0.1 81 103 325 347 312 363 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 5 12 0.16 85 2.0 0.0 71 101 369 401 361 407 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 6 12 0.24 1.2e+02 1.4 0.0 79 107 407 435 397 479 0.66 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 7 12 1.2 6.1e+02 -0.9 0.0 75 102 459 486 448 499 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 8 12 0.12 63 2.4 0.0 79 103 519 543 508 559 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 9 12 0.045 24 3.8 0.0 80 106 576 602 554 610 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 10 12 0.056 30 3.4 0.1 78 103 630 655 601 673 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 11 12 0.3 1.6e+02 1.0 0.0 76 103 684 711 672 722 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF160-214 - 782 5.4e-07 28.9 15.1 12 12 0.16 83 2.0 0.0 79 102 743 766 715 777 0.77 Family of unknown function, FAM178 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 1 10 0.065 34 4.4 0.0 15 40 256 286 255 306 0.80 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 2 10 7 3.7e+03 -2.1 0.0 21 37 318 334 316 359 0.76 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 3 10 1.8 9.5e+02 -0.3 0.0 18 40 371 398 368 417 0.74 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 4 10 0.31 1.6e+02 2.2 0.0 17 37 426 446 424 458 0.78 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 5 10 0.22 1.2e+02 2.7 0.0 17 38 482 503 480 508 0.84 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 6 10 0.077 40 4.1 0.0 17 39 510 537 506 558 0.79 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 7 10 1.3 6.6e+02 0.2 0.0 22 40 571 594 569 613 0.75 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 8 10 1.2 6.4e+02 0.3 0.0 17 39 622 649 620 670 0.72 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 9 10 0.13 70 3.4 0.0 17 40 678 706 676 727 0.77 Rad4 beta-hairpin domain 1 BHD_1 PF10403.9 51 ZNF160-214 - 782 2.6e-06 27.2 6.4 10 10 4.9 2.6e+03 -1.6 0.0 19 40 736 762 732 778 0.75 Rad4 beta-hairpin domain 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:45 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 1 9 1.4e-05 0.012 16.0 0.2 1 23 57 79 57 79 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 2 9 8.6e-06 0.0077 16.6 2.3 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 3 9 0.00023 0.21 12.1 2.1 1 23 163 186 163 186 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 4 9 0.025 22 5.7 0.3 2 23 190 212 189 212 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 5 9 2.5e-07 0.00022 21.5 1.2 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 6 9 1.1e-06 0.001 19.4 2.3 1 23 302 324 302 324 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 7 9 1e-07 9.4e-05 22.7 3.3 3 23 500 520 499 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 8 9 9e-06 0.008 16.6 3.4 1 23 526 548 526 549 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-201 - 722 6e-27 92.6 69.9 9 9 0.091 82 4.0 0.5 1 23 646 668 646 669 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 1 9 2.2e-05 0.02 15.7 0.2 1 23 57 79 57 80 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 2 9 0.00018 0.16 12.9 1.9 1 23 85 107 85 108 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 3 9 0.00086 0.77 10.8 1.7 1 24 163 186 163 186 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 4 9 0.0038 3.4 8.8 0.6 1 24 189 212 189 212 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 5 9 3.5e-06 0.0031 18.2 1.7 1 23 274 296 274 297 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 6 9 5.4e-06 0.0049 17.6 2.3 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 7 9 5.2e-06 0.0047 17.7 3.0 3 23 500 520 499 521 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 8 9 8.6e-05 0.077 13.9 2.5 1 24 526 549 526 549 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-201 - 722 3.1e-22 77.3 71.0 9 9 0.043 39 5.5 1.1 1 24 646 669 646 669 0.89 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 1 12 0.00032 0.29 11.6 0.2 11 24 53 66 51 67 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 2 12 0.00098 0.87 10.1 0.2 4 22 74 92 72 96 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 3 12 0.043 39 4.9 0.8 2 14 100 112 100 113 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 4 12 0.03 26 5.4 0.6 14 25 162 173 155 174 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 5 12 0.66 5.9e+02 1.2 0.2 13 22 187 196 179 200 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 6 12 0.056 51 4.6 0.2 14 25 272 284 266 285 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 7 12 3.4e-05 0.03 14.7 3.9 2 25 289 312 289 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 8 12 0.71 6.4e+02 1.1 0.1 2 10 317 325 317 330 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 9 12 0.013 12 6.6 0.8 17 25 500 508 496 509 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 10 12 6.3e-11 5.7e-08 32.9 2.3 1 25 512 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 11 12 0.13 1.1e+02 3.4 0.4 1 12 540 551 540 558 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-201 - 722 1.3e-12 47.5 78.2 12 12 2.6 2.3e+03 -0.7 0.1 15 24 646 655 641 656 0.82 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 1 8 9.5e-06 0.0085 15.8 0.3 1 25 85 108 85 109 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 2 8 0.56 5e+02 0.6 1.2 1 6 163 168 163 171 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 3 8 0.0059 5.2 6.9 0.0 2 24 190 212 189 213 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 4 8 0.096 86 3.0 0.1 16 25 289 297 274 298 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 5 8 0.13 1.2e+02 2.6 0.2 16 24 317 324 316 325 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 6 8 0.069 62 3.5 1.4 7 26 506 522 500 522 0.70 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 7 8 4.2e-09 3.7e-06 26.6 3.3 1 24 526 549 526 551 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-201 - 722 1.6e-12 46.9 41.2 8 8 0.00051 0.45 10.3 0.0 1 25 646 669 646 670 0.95 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 1 7 0.0069 6.2 7.2 0.0 2 18 56 72 55 82 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 2 7 9.7e-05 0.087 13.1 0.3 1 26 83 108 83 114 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 3 7 0.0067 6 7.2 4.2 2 53 162 212 161 213 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 4 7 0.00011 0.097 13.0 3.6 2 50 273 322 272 326 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 5 7 0.0053 4.7 7.6 1.0 5 27 500 522 498 526 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 6 7 2.7e-05 0.025 14.9 1.0 3 29 526 553 524 556 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-201 - 722 1e-09 38.6 46.6 7 7 0.86 7.7e+02 0.5 0.3 5 28 648 672 646 675 0.61 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:45 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 1 9 1.4e-05 0.012 16.0 0.2 1 23 57 79 57 79 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 2 9 8.6e-06 0.0077 16.6 2.3 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 3 9 0.00023 0.21 12.1 2.1 1 23 163 186 163 186 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 4 9 0.025 22 5.7 0.3 2 23 190 212 189 212 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 5 9 2.5e-07 0.00022 21.5 1.2 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 6 9 1.1e-06 0.001 19.4 2.3 1 23 302 324 302 324 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 7 9 1e-07 9.4e-05 22.7 3.3 3 23 500 520 499 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 8 9 9e-06 0.008 16.6 3.4 1 23 526 548 526 549 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-202 - 722 6e-27 92.6 69.9 9 9 0.091 82 4.0 0.5 1 23 646 668 646 669 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 1 9 2.2e-05 0.02 15.7 0.2 1 23 57 79 57 80 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 2 9 0.00018 0.16 12.9 1.9 1 23 85 107 85 108 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 3 9 0.00086 0.77 10.8 1.7 1 24 163 186 163 186 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 4 9 0.0038 3.4 8.8 0.6 1 24 189 212 189 212 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 5 9 3.5e-06 0.0031 18.2 1.7 1 23 274 296 274 297 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 6 9 5.4e-06 0.0049 17.6 2.3 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 7 9 5.2e-06 0.0047 17.7 3.0 3 23 500 520 499 521 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 8 9 8.6e-05 0.077 13.9 2.5 1 24 526 549 526 549 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-202 - 722 3.1e-22 77.3 71.0 9 9 0.043 39 5.5 1.1 1 24 646 669 646 669 0.89 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 1 12 0.00032 0.29 11.6 0.2 11 24 53 66 51 67 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 2 12 0.00098 0.87 10.1 0.2 4 22 74 92 72 96 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 3 12 0.043 39 4.9 0.8 2 14 100 112 100 113 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 4 12 0.03 26 5.4 0.6 14 25 162 173 155 174 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 5 12 0.66 5.9e+02 1.2 0.2 13 22 187 196 179 200 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 6 12 0.056 51 4.6 0.2 14 25 272 284 266 285 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 7 12 3.4e-05 0.03 14.7 3.9 2 25 289 312 289 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 8 12 0.71 6.4e+02 1.1 0.1 2 10 317 325 317 330 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 9 12 0.013 12 6.6 0.8 17 25 500 508 496 509 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 10 12 6.3e-11 5.7e-08 32.9 2.3 1 25 512 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 11 12 0.13 1.1e+02 3.4 0.4 1 12 540 551 540 558 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-202 - 722 1.3e-12 47.5 78.2 12 12 2.6 2.3e+03 -0.7 0.1 15 24 646 655 641 656 0.82 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 1 8 9.5e-06 0.0085 15.8 0.3 1 25 85 108 85 109 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 2 8 0.56 5e+02 0.6 1.2 1 6 163 168 163 171 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 3 8 0.0059 5.2 6.9 0.0 2 24 190 212 189 213 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 4 8 0.096 86 3.0 0.1 16 25 289 297 274 298 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 5 8 0.13 1.2e+02 2.6 0.2 16 24 317 324 316 325 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 6 8 0.069 62 3.5 1.4 7 26 506 522 500 522 0.70 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 7 8 4.2e-09 3.7e-06 26.6 3.3 1 24 526 549 526 551 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-202 - 722 1.6e-12 46.9 41.2 8 8 0.00051 0.45 10.3 0.0 1 25 646 669 646 670 0.95 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 1 7 0.0069 6.2 7.2 0.0 2 18 56 72 55 82 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 2 7 9.7e-05 0.087 13.1 0.3 1 26 83 108 83 114 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 3 7 0.0067 6 7.2 4.2 2 53 162 212 161 213 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 4 7 0.00011 0.097 13.0 3.6 2 50 273 322 272 326 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 5 7 0.0053 4.7 7.6 1.0 5 27 500 522 498 526 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 6 7 2.7e-05 0.025 14.9 1.0 3 29 526 553 524 556 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-202 - 722 1e-09 38.6 46.6 7 7 0.86 7.7e+02 0.5 0.3 5 28 648 672 646 675 0.61 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 1 9 1.4e-05 0.012 16.0 0.2 1 23 57 79 57 79 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 2 9 8.6e-06 0.0077 16.6 2.3 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 3 9 0.00023 0.21 12.1 2.1 1 23 163 186 163 186 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 4 9 0.025 22 5.7 0.3 2 23 190 212 189 212 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 5 9 2.5e-07 0.00022 21.5 1.2 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 6 9 1.1e-06 0.001 19.4 2.3 1 23 302 324 302 324 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 7 9 1e-07 9.4e-05 22.7 3.3 3 23 500 520 499 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 8 9 9e-06 0.008 16.6 3.4 1 23 526 548 526 549 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF219-203 - 722 6e-27 92.6 69.9 9 9 0.091 82 4.0 0.5 1 23 646 668 646 669 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 1 9 2.2e-05 0.02 15.7 0.2 1 23 57 79 57 80 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 2 9 0.00018 0.16 12.9 1.9 1 23 85 107 85 108 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 3 9 0.00086 0.77 10.8 1.7 1 24 163 186 163 186 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 4 9 0.0038 3.4 8.8 0.6 1 24 189 212 189 212 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 5 9 3.5e-06 0.0031 18.2 1.7 1 23 274 296 274 297 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 6 9 5.4e-06 0.0049 17.6 2.3 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 7 9 5.2e-06 0.0047 17.7 3.0 3 23 500 520 499 521 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 8 9 8.6e-05 0.077 13.9 2.5 1 24 526 549 526 549 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF219-203 - 722 3.1e-22 77.3 71.0 9 9 0.043 39 5.5 1.1 1 24 646 669 646 669 0.89 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 1 12 0.00032 0.29 11.6 0.2 11 24 53 66 51 67 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 2 12 0.00098 0.87 10.1 0.2 4 22 74 92 72 96 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 3 12 0.043 39 4.9 0.8 2 14 100 112 100 113 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 4 12 0.03 26 5.4 0.6 14 25 162 173 155 174 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 5 12 0.66 5.9e+02 1.2 0.2 13 22 187 196 179 200 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 6 12 0.056 51 4.6 0.2 14 25 272 284 266 285 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 7 12 3.4e-05 0.03 14.7 3.9 2 25 289 312 289 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 8 12 0.71 6.4e+02 1.1 0.1 2 10 317 325 317 330 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 9 12 0.013 12 6.6 0.8 17 25 500 508 496 509 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 10 12 6.3e-11 5.7e-08 32.9 2.3 1 25 512 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 11 12 0.13 1.1e+02 3.4 0.4 1 12 540 551 540 558 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF219-203 - 722 1.3e-12 47.5 78.2 12 12 2.6 2.3e+03 -0.7 0.1 15 24 646 655 641 656 0.82 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 1 8 9.5e-06 0.0085 15.8 0.3 1 25 85 108 85 109 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 2 8 0.56 5e+02 0.6 1.2 1 6 163 168 163 171 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 3 8 0.0059 5.2 6.9 0.0 2 24 190 212 189 213 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 4 8 0.096 86 3.0 0.1 16 25 289 297 274 298 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 5 8 0.13 1.2e+02 2.6 0.2 16 24 317 324 316 325 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 6 8 0.069 62 3.5 1.4 7 26 506 522 500 522 0.70 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 7 8 4.2e-09 3.7e-06 26.6 3.3 1 24 526 549 526 551 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF219-203 - 722 1.6e-12 46.9 41.2 8 8 0.00051 0.45 10.3 0.0 1 25 646 669 646 670 0.95 C2H2-type zinc-finger domain zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 1 7 0.0069 6.2 7.2 0.0 2 18 56 72 55 82 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 2 7 9.7e-05 0.087 13.1 0.3 1 26 83 108 83 114 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 3 7 0.0067 6 7.2 4.2 2 53 162 212 161 213 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 4 7 0.00011 0.097 13.0 3.6 2 50 273 322 272 326 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 5 7 0.0053 4.7 7.6 1.0 5 27 500 522 498 526 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 6 7 2.7e-05 0.025 14.9 1.0 3 29 526 553 524 556 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF219-203 - 722 1e-09 38.6 46.6 7 7 0.86 7.7e+02 0.5 0.3 5 28 648 672 646 675 0.61 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:51 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:51 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 1 16 0.00021 0.27 11.7 0.2 8 25 163 180 161 181 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 2 16 4e-06 0.0052 17.2 1.0 5 24 188 207 185 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 3 16 3.6e-07 0.00046 20.5 1.7 5 25 216 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 4 16 5.4e-10 6.9e-07 29.4 2.4 1 24 240 263 240 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 5 16 4.4e-11 5.6e-08 32.9 1.9 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 6 16 4.5e-11 5.8e-08 32.8 0.3 2 24 297 319 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 7 16 1.7e-10 2.2e-07 31.0 0.6 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 8 16 4.3e-08 5.5e-05 23.4 0.5 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 9 16 5.1e-09 6.6e-06 26.3 2.6 4 24 383 403 383 404 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 10 16 3.8e-07 0.00049 20.4 0.3 4 24 411 431 409 433 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 11 16 1.9e-09 2.4e-06 27.7 1.3 3 26 438 461 437 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 12 16 4.2e-11 5.4e-08 32.9 0.4 1 24 464 487 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 13 16 2.8e-10 3.5e-07 30.3 1.2 2 25 493 516 493 517 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 14 16 4.3e-06 0.0055 17.1 3.9 4 25 523 544 521 545 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 15 16 9.1e-10 1.2e-06 28.7 0.1 1 24 548 571 548 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-201 - 617 2.9e-98 318.3 114.1 16 16 0.0029 3.7 8.1 0.1 2 16 577 591 577 593 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 1 15 0.00013 0.16 12.5 0.9 1 23 170 192 170 192 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 2 15 2.7e-06 0.0034 17.7 4.0 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 3 15 1.9e-09 2.4e-06 27.7 2.0 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 4 15 5.4e-05 0.07 13.6 3.4 1 23 254 276 254 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 5 15 1.4e-07 0.00018 21.8 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 6 15 4.1e-07 0.00053 20.3 1.3 1 23 310 332 310 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 7 15 3e-07 0.00039 20.7 1.1 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 8 15 0.0016 2 9.0 5.3 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 9 15 1.4e-05 0.018 15.5 2.3 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 10 15 7.9e-06 0.01 16.3 2.0 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 11 15 2.7e-05 0.035 14.6 0.6 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 12 15 7.9e-06 0.01 16.3 1.4 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 13 15 3e-06 0.0039 17.6 5.1 1 20 506 525 506 528 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 14 15 5.1e-06 0.0065 16.9 1.0 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-201 - 617 1.9e-53 176.0 134.1 15 15 7.9e-06 0.01 16.3 1.4 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 1 15 0.0013 1.6 9.7 1.0 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 2 15 0.0015 1.9 9.6 3.7 1 23 198 220 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 3 15 2.3e-06 0.0029 18.3 1.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 4 15 6.4e-06 0.0082 16.9 3.3 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 5 15 0.0008 1 10.4 0.4 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 6 15 4.8e-06 0.0061 17.3 0.8 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 7 15 0.00012 0.16 12.9 0.4 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 8 15 0.00021 0.27 12.2 4.6 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 9 15 0.00041 0.53 11.3 2.6 1 23 394 416 394 417 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 10 15 0.00045 0.57 11.2 1.4 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 11 15 0.00037 0.47 11.4 0.4 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 12 15 0.00081 1 10.4 2.0 1 23 478 500 478 501 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 13 15 0.00062 0.79 10.7 5.3 1 20 506 525 506 528 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 14 15 6.8e-05 0.087 13.7 0.4 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-201 - 617 3.9e-32 108.2 129.5 15 15 0.00081 1 10.4 2.0 1 23 562 584 562 585 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF221-201 - 617 5e-23 80.5 0.1 1 2 3.9e-26 5e-23 80.5 0.1 2 42 30 70 29 70 0.98 KRAB box KRAB PF01352.27 42 ZNF221-201 - 617 5e-23 80.5 0.1 2 2 7.4 9.4e+03 -3.6 0.3 14 18 118 122 117 125 0.84 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 1 15 0.006 7.7 6.9 2.8 2 24 170 192 169 198 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 2 15 1.8 2.3e+03 -1.0 0.1 2 11 198 207 197 207 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 3 15 0.0017 2.1 8.7 3.1 2 22 226 246 225 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 4 15 0.00042 0.54 10.6 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 5 15 4.4e-06 0.0056 16.9 0.4 2 22 282 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 6 15 0.031 40 4.7 0.1 2 11 310 319 309 328 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 7 15 0.0094 12 6.3 0.1 2 20 338 356 337 356 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 8 15 1.5 1.9e+03 -0.7 4.0 2 12 366 376 365 384 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 9 15 0.018 23 5.4 0.7 2 12 394 404 393 414 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 10 15 0.00085 1.1 9.6 1.6 2 24 422 444 421 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 11 15 0.002 2.6 8.4 0.2 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 12 15 0.058 74 3.8 0.5 2 11 478 487 477 497 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 13 15 0.0009 1.2 9.6 0.3 2 21 506 525 505 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 14 15 0.00087 1.1 9.6 1.2 2 22 534 554 533 554 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-201 - 617 1.6e-11 44.2 96.8 15 15 0.058 74 3.8 0.5 2 11 562 571 561 581 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 1 12 0.00023 0.3 11.3 2.7 6 34 170 205 169 207 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 2 12 0.00075 0.96 9.6 4.0 6 34 226 261 225 264 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 3 12 0.0023 3 8.1 5.2 6 34 254 289 253 291 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 4 12 0.0024 3 8.0 3.9 6 35 282 318 281 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 5 12 0.00076 0.97 9.6 2.3 6 38 310 349 309 350 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 6 12 0.00092 1.2 9.3 4.6 6 34 338 373 337 375 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 7 12 0.0025 3.2 7.9 9.2 6 36 366 403 364 405 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 8 12 5.7e-06 0.0073 16.4 3.1 6 39 422 462 421 463 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 9 12 0.0055 7 6.9 7.3 6 36 478 515 477 517 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 10 12 0.1 1.3e+02 2.8 9.5 6 22 506 528 505 539 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 11 12 0.028 36 4.6 5.9 6 34 534 569 532 572 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-201 - 617 2.4e-09 37.1 92.2 12 12 0.03 39 4.5 0.6 6 15 562 571 561 577 0.92 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 1 15 0.014 18 5.4 1.6 2 12 170 180 170 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 2 15 0.022 29 4.8 2.6 2 24 198 220 197 223 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 3 15 0.00063 0.8 9.8 2.8 2 12 226 236 225 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 4 15 0.0088 11 6.1 4.5 2 21 254 273 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 5 15 0.025 32 4.7 0.7 2 11 282 291 282 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 6 15 0.00018 0.23 11.5 0.5 2 12 310 320 310 321 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 7 15 0.00013 0.17 11.9 0.4 2 21 338 357 338 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 8 15 0.055 71 3.6 0.8 2 11 366 375 366 375 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 9 15 0.00037 0.48 10.5 1.1 2 12 394 404 394 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 10 15 0.025 32 4.7 1.2 2 11 422 431 421 433 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 11 15 0.047 60 3.8 0.3 2 12 450 460 450 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 12 15 0.00025 0.33 11.0 0.8 2 12 478 488 478 488 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 13 15 0.038 49 4.1 5.8 2 24 506 528 506 531 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 14 15 0.01 13 5.9 0.8 2 22 534 554 533 557 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-201 - 617 5.2e-09 35.9 121.3 15 15 0.00025 0.33 11.0 0.8 2 12 562 572 562 572 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 1 15 0.024 31 4.3 0.1 3 14 170 181 168 188 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 2 15 0.074 94 2.7 1.5 2 12 197 207 196 209 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 3 15 0.0034 4.3 7.0 2.0 2 21 225 245 224 245 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 4 15 0.078 99 2.7 0.1 3 14 254 265 252 272 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 5 15 1.1e-05 0.014 15.0 1.0 3 21 282 301 280 301 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 6 15 0.015 19 4.9 0.1 3 15 310 322 308 329 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 7 15 0.0056 7.1 6.3 0.0 3 20 338 356 336 357 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 8 15 0.092 1.2e+02 2.4 3.0 3 12 366 375 364 385 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 9 15 0.016 21 4.8 0.2 3 12 394 403 392 407 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 10 15 0.0012 1.5 8.4 0.2 2 21 421 441 420 441 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 11 15 0.021 28 4.4 0.2 3 11 450 458 448 469 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 12 15 0.02 26 4.5 0.2 3 12 478 487 476 488 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 13 15 0.00022 0.28 10.8 1.0 3 21 506 525 504 525 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 14 15 0.097 1.2e+02 2.3 0.2 3 11 534 542 532 553 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-201 - 617 8.6e-09 34.8 82.5 15 15 0.02 26 4.5 0.2 3 12 562 571 560 572 0.90 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 1 16 0.00021 0.27 11.7 0.2 8 25 163 180 161 181 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 2 16 4e-06 0.0052 17.2 1.0 5 24 188 207 185 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 3 16 3.6e-07 0.00046 20.5 1.7 5 25 216 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 4 16 5.4e-10 6.9e-07 29.4 2.4 1 24 240 263 240 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 5 16 4.4e-11 5.6e-08 32.9 1.9 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 6 16 4.5e-11 5.8e-08 32.8 0.3 2 24 297 319 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 7 16 1.7e-10 2.2e-07 31.0 0.6 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 8 16 4.3e-08 5.5e-05 23.4 0.5 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 9 16 5.1e-09 6.6e-06 26.3 2.6 4 24 383 403 383 404 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 10 16 3.8e-07 0.00049 20.4 0.3 4 24 411 431 409 433 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 11 16 1.9e-09 2.4e-06 27.7 1.3 3 26 438 461 437 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 12 16 4.2e-11 5.4e-08 32.9 0.4 1 24 464 487 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 13 16 2.8e-10 3.5e-07 30.3 1.2 2 25 493 516 493 517 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 14 16 4.3e-06 0.0055 17.1 3.9 4 25 523 544 521 545 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 15 16 9.1e-10 1.2e-06 28.7 0.1 1 24 548 571 548 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-202 - 617 2.9e-98 318.3 114.1 16 16 0.0029 3.7 8.1 0.1 2 16 577 591 577 593 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 1 15 0.00013 0.16 12.5 0.9 1 23 170 192 170 192 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 2 15 2.7e-06 0.0034 17.7 4.0 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 3 15 1.9e-09 2.4e-06 27.7 2.0 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 4 15 5.4e-05 0.07 13.6 3.4 1 23 254 276 254 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 5 15 1.4e-07 0.00018 21.8 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 6 15 4.1e-07 0.00053 20.3 1.3 1 23 310 332 310 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 7 15 3e-07 0.00039 20.7 1.1 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 8 15 0.0016 2 9.0 5.3 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 9 15 1.4e-05 0.018 15.5 2.3 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 10 15 7.9e-06 0.01 16.3 2.0 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 11 15 2.7e-05 0.035 14.6 0.6 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 12 15 7.9e-06 0.01 16.3 1.4 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 13 15 3e-06 0.0039 17.6 5.1 1 20 506 525 506 528 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 14 15 5.1e-06 0.0065 16.9 1.0 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-202 - 617 1.9e-53 176.0 134.1 15 15 7.9e-06 0.01 16.3 1.4 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 1 15 0.0013 1.6 9.7 1.0 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 2 15 0.0015 1.9 9.6 3.7 1 23 198 220 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 3 15 2.3e-06 0.0029 18.3 1.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 4 15 6.4e-06 0.0082 16.9 3.3 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 5 15 0.0008 1 10.4 0.4 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 6 15 4.8e-06 0.0061 17.3 0.8 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 7 15 0.00012 0.16 12.9 0.4 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 8 15 0.00021 0.27 12.2 4.6 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 9 15 0.00041 0.53 11.3 2.6 1 23 394 416 394 417 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 10 15 0.00045 0.57 11.2 1.4 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 11 15 0.00037 0.47 11.4 0.4 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 12 15 0.00081 1 10.4 2.0 1 23 478 500 478 501 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 13 15 0.00062 0.79 10.7 5.3 1 20 506 525 506 528 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 14 15 6.8e-05 0.087 13.7 0.4 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-202 - 617 3.9e-32 108.2 129.5 15 15 0.00081 1 10.4 2.0 1 23 562 584 562 585 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF221-202 - 617 5e-23 80.5 0.1 1 2 3.9e-26 5e-23 80.5 0.1 2 42 30 70 29 70 0.98 KRAB box KRAB PF01352.27 42 ZNF221-202 - 617 5e-23 80.5 0.1 2 2 7.4 9.4e+03 -3.6 0.3 14 18 118 122 117 125 0.84 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 1 15 0.006 7.7 6.9 2.8 2 24 170 192 169 198 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 2 15 1.8 2.3e+03 -1.0 0.1 2 11 198 207 197 207 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 3 15 0.0017 2.1 8.7 3.1 2 22 226 246 225 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 4 15 0.00042 0.54 10.6 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 5 15 4.4e-06 0.0056 16.9 0.4 2 22 282 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 6 15 0.031 40 4.7 0.1 2 11 310 319 309 328 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 7 15 0.0094 12 6.3 0.1 2 20 338 356 337 356 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 8 15 1.5 1.9e+03 -0.7 4.0 2 12 366 376 365 384 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 9 15 0.018 23 5.4 0.7 2 12 394 404 393 414 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 10 15 0.00085 1.1 9.6 1.6 2 24 422 444 421 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 11 15 0.002 2.6 8.4 0.2 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 12 15 0.058 74 3.8 0.5 2 11 478 487 477 497 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 13 15 0.0009 1.2 9.6 0.3 2 21 506 525 505 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 14 15 0.00087 1.1 9.6 1.2 2 22 534 554 533 554 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-202 - 617 1.6e-11 44.2 96.8 15 15 0.058 74 3.8 0.5 2 11 562 571 561 581 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 1 12 0.00023 0.3 11.3 2.7 6 34 170 205 169 207 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 2 12 0.00075 0.96 9.6 4.0 6 34 226 261 225 264 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 3 12 0.0023 3 8.1 5.2 6 34 254 289 253 291 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 4 12 0.0024 3 8.0 3.9 6 35 282 318 281 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 5 12 0.00076 0.97 9.6 2.3 6 38 310 349 309 350 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 6 12 0.00092 1.2 9.3 4.6 6 34 338 373 337 375 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 7 12 0.0025 3.2 7.9 9.2 6 36 366 403 364 405 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 8 12 5.7e-06 0.0073 16.4 3.1 6 39 422 462 421 463 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 9 12 0.0055 7 6.9 7.3 6 36 478 515 477 517 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 10 12 0.1 1.3e+02 2.8 9.5 6 22 506 528 505 539 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 11 12 0.028 36 4.6 5.9 6 34 534 569 532 572 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-202 - 617 2.4e-09 37.1 92.2 12 12 0.03 39 4.5 0.6 6 15 562 571 561 577 0.92 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 1 15 0.014 18 5.4 1.6 2 12 170 180 170 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 2 15 0.022 29 4.8 2.6 2 24 198 220 197 223 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 3 15 0.00063 0.8 9.8 2.8 2 12 226 236 225 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 4 15 0.0088 11 6.1 4.5 2 21 254 273 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 5 15 0.025 32 4.7 0.7 2 11 282 291 282 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 6 15 0.00018 0.23 11.5 0.5 2 12 310 320 310 321 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 7 15 0.00013 0.17 11.9 0.4 2 21 338 357 338 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 8 15 0.055 71 3.6 0.8 2 11 366 375 366 375 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 9 15 0.00037 0.48 10.5 1.1 2 12 394 404 394 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 10 15 0.025 32 4.7 1.2 2 11 422 431 421 433 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 11 15 0.047 60 3.8 0.3 2 12 450 460 450 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 12 15 0.00025 0.33 11.0 0.8 2 12 478 488 478 488 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 13 15 0.038 49 4.1 5.8 2 24 506 528 506 531 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 14 15 0.01 13 5.9 0.8 2 22 534 554 533 557 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-202 - 617 5.2e-09 35.9 121.3 15 15 0.00025 0.33 11.0 0.8 2 12 562 572 562 572 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 1 15 0.024 31 4.3 0.1 3 14 170 181 168 188 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 2 15 0.074 94 2.7 1.5 2 12 197 207 196 209 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 3 15 0.0034 4.3 7.0 2.0 2 21 225 245 224 245 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 4 15 0.078 99 2.7 0.1 3 14 254 265 252 272 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 5 15 1.1e-05 0.014 15.0 1.0 3 21 282 301 280 301 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 6 15 0.015 19 4.9 0.1 3 15 310 322 308 329 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 7 15 0.0056 7.1 6.3 0.0 3 20 338 356 336 357 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 8 15 0.092 1.2e+02 2.4 3.0 3 12 366 375 364 385 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 9 15 0.016 21 4.8 0.2 3 12 394 403 392 407 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 10 15 0.0012 1.5 8.4 0.2 2 21 421 441 420 441 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 11 15 0.021 28 4.4 0.2 3 11 450 458 448 469 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 12 15 0.02 26 4.5 0.2 3 12 478 487 476 488 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 13 15 0.00022 0.28 10.8 1.0 3 21 506 525 504 525 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 14 15 0.097 1.2e+02 2.3 0.2 3 11 534 542 532 553 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-202 - 617 8.6e-09 34.8 82.5 15 15 0.02 26 4.5 0.2 3 12 562 571 560 572 0.90 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 1 16 0.00021 0.27 11.7 0.2 8 25 163 180 161 181 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 2 16 4e-06 0.0052 17.2 1.0 5 24 188 207 185 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 3 16 3.6e-07 0.00046 20.5 1.7 5 25 216 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 4 16 5.4e-10 6.9e-07 29.4 2.4 1 24 240 263 240 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 5 16 4.4e-11 5.6e-08 32.9 1.9 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 6 16 4.5e-11 5.8e-08 32.8 0.3 2 24 297 319 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 7 16 1.7e-10 2.2e-07 31.0 0.6 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 8 16 4.3e-08 5.5e-05 23.4 0.5 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 9 16 5.1e-09 6.6e-06 26.3 2.6 4 24 383 403 383 404 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 10 16 3.8e-07 0.00049 20.4 0.3 4 24 411 431 409 433 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 11 16 1.9e-09 2.4e-06 27.7 1.3 3 26 438 461 437 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 12 16 4.2e-11 5.4e-08 32.9 0.4 1 24 464 487 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 13 16 2.8e-10 3.5e-07 30.3 1.2 2 25 493 516 493 517 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 14 16 4.3e-06 0.0055 17.1 3.9 4 25 523 544 521 545 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 15 16 9.1e-10 1.2e-06 28.7 0.1 1 24 548 571 548 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-204 - 617 2.9e-98 318.3 114.1 16 16 0.0029 3.7 8.1 0.1 2 16 577 591 577 593 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 1 15 0.00013 0.16 12.5 0.9 1 23 170 192 170 192 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 2 15 2.7e-06 0.0034 17.7 4.0 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 3 15 1.9e-09 2.4e-06 27.7 2.0 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 4 15 5.4e-05 0.07 13.6 3.4 1 23 254 276 254 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 5 15 1.4e-07 0.00018 21.8 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 6 15 4.1e-07 0.00053 20.3 1.3 1 23 310 332 310 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 7 15 3e-07 0.00039 20.7 1.1 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 8 15 0.0016 2 9.0 5.3 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 9 15 1.4e-05 0.018 15.5 2.3 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 10 15 7.9e-06 0.01 16.3 2.0 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 11 15 2.7e-05 0.035 14.6 0.6 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 12 15 7.9e-06 0.01 16.3 1.4 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 13 15 3e-06 0.0039 17.6 5.1 1 20 506 525 506 528 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 14 15 5.1e-06 0.0065 16.9 1.0 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-204 - 617 1.9e-53 176.0 134.1 15 15 7.9e-06 0.01 16.3 1.4 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 1 15 0.0013 1.6 9.7 1.0 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 2 15 0.0015 1.9 9.6 3.7 1 23 198 220 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 3 15 2.3e-06 0.0029 18.3 1.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 4 15 6.4e-06 0.0082 16.9 3.3 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 5 15 0.0008 1 10.4 0.4 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 6 15 4.8e-06 0.0061 17.3 0.8 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 7 15 0.00012 0.16 12.9 0.4 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 8 15 0.00021 0.27 12.2 4.6 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 9 15 0.00041 0.53 11.3 2.6 1 23 394 416 394 417 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 10 15 0.00045 0.57 11.2 1.4 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 11 15 0.00037 0.47 11.4 0.4 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 12 15 0.00081 1 10.4 2.0 1 23 478 500 478 501 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 13 15 0.00062 0.79 10.7 5.3 1 20 506 525 506 528 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 14 15 6.8e-05 0.087 13.7 0.4 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-204 - 617 3.9e-32 108.2 129.5 15 15 0.00081 1 10.4 2.0 1 23 562 584 562 585 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF221-204 - 617 5e-23 80.5 0.1 1 2 3.9e-26 5e-23 80.5 0.1 2 42 30 70 29 70 0.98 KRAB box KRAB PF01352.27 42 ZNF221-204 - 617 5e-23 80.5 0.1 2 2 7.4 9.4e+03 -3.6 0.3 14 18 118 122 117 125 0.84 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 1 15 0.006 7.7 6.9 2.8 2 24 170 192 169 198 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 2 15 1.8 2.3e+03 -1.0 0.1 2 11 198 207 197 207 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 3 15 0.0017 2.1 8.7 3.1 2 22 226 246 225 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 4 15 0.00042 0.54 10.6 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 5 15 4.4e-06 0.0056 16.9 0.4 2 22 282 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 6 15 0.031 40 4.7 0.1 2 11 310 319 309 328 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 7 15 0.0094 12 6.3 0.1 2 20 338 356 337 356 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 8 15 1.5 1.9e+03 -0.7 4.0 2 12 366 376 365 384 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 9 15 0.018 23 5.4 0.7 2 12 394 404 393 414 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 10 15 0.00085 1.1 9.6 1.6 2 24 422 444 421 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 11 15 0.002 2.6 8.4 0.2 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 12 15 0.058 74 3.8 0.5 2 11 478 487 477 497 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 13 15 0.0009 1.2 9.6 0.3 2 21 506 525 505 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 14 15 0.00087 1.1 9.6 1.2 2 22 534 554 533 554 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-204 - 617 1.6e-11 44.2 96.8 15 15 0.058 74 3.8 0.5 2 11 562 571 561 581 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 1 12 0.00023 0.3 11.3 2.7 6 34 170 205 169 207 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 2 12 0.00075 0.96 9.6 4.0 6 34 226 261 225 264 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 3 12 0.0023 3 8.1 5.2 6 34 254 289 253 291 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 4 12 0.0024 3 8.0 3.9 6 35 282 318 281 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 5 12 0.00076 0.97 9.6 2.3 6 38 310 349 309 350 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 6 12 0.00092 1.2 9.3 4.6 6 34 338 373 337 375 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 7 12 0.0025 3.2 7.9 9.2 6 36 366 403 364 405 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 8 12 5.7e-06 0.0073 16.4 3.1 6 39 422 462 421 463 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 9 12 0.0055 7 6.9 7.3 6 36 478 515 477 517 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 10 12 0.1 1.3e+02 2.8 9.5 6 22 506 528 505 539 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 11 12 0.028 36 4.6 5.9 6 34 534 569 532 572 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-204 - 617 2.4e-09 37.1 92.2 12 12 0.03 39 4.5 0.6 6 15 562 571 561 577 0.92 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 1 15 0.014 18 5.4 1.6 2 12 170 180 170 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 2 15 0.022 29 4.8 2.6 2 24 198 220 197 223 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 3 15 0.00063 0.8 9.8 2.8 2 12 226 236 225 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 4 15 0.0088 11 6.1 4.5 2 21 254 273 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 5 15 0.025 32 4.7 0.7 2 11 282 291 282 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 6 15 0.00018 0.23 11.5 0.5 2 12 310 320 310 321 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 7 15 0.00013 0.17 11.9 0.4 2 21 338 357 338 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 8 15 0.055 71 3.6 0.8 2 11 366 375 366 375 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 9 15 0.00037 0.48 10.5 1.1 2 12 394 404 394 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 10 15 0.025 32 4.7 1.2 2 11 422 431 421 433 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 11 15 0.047 60 3.8 0.3 2 12 450 460 450 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 12 15 0.00025 0.33 11.0 0.8 2 12 478 488 478 488 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 13 15 0.038 49 4.1 5.8 2 24 506 528 506 531 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 14 15 0.01 13 5.9 0.8 2 22 534 554 533 557 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-204 - 617 5.2e-09 35.9 121.3 15 15 0.00025 0.33 11.0 0.8 2 12 562 572 562 572 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 1 15 0.024 31 4.3 0.1 3 14 170 181 168 188 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 2 15 0.074 94 2.7 1.5 2 12 197 207 196 209 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 3 15 0.0034 4.3 7.0 2.0 2 21 225 245 224 245 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 4 15 0.078 99 2.7 0.1 3 14 254 265 252 272 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 5 15 1.1e-05 0.014 15.0 1.0 3 21 282 301 280 301 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 6 15 0.015 19 4.9 0.1 3 15 310 322 308 329 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 7 15 0.0056 7.1 6.3 0.0 3 20 338 356 336 357 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 8 15 0.092 1.2e+02 2.4 3.0 3 12 366 375 364 385 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 9 15 0.016 21 4.8 0.2 3 12 394 403 392 407 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 10 15 0.0012 1.5 8.4 0.2 2 21 421 441 420 441 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 11 15 0.021 28 4.4 0.2 3 11 450 458 448 469 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 12 15 0.02 26 4.5 0.2 3 12 478 487 476 488 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 13 15 0.00022 0.28 10.8 1.0 3 21 506 525 504 525 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 14 15 0.097 1.2e+02 2.3 0.2 3 11 534 542 532 553 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-204 - 617 8.6e-09 34.8 82.5 15 15 0.02 26 4.5 0.2 3 12 562 571 560 572 0.90 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 1 16 0.00021 0.27 11.7 0.2 8 25 163 180 161 181 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 2 16 4e-06 0.0052 17.2 1.0 5 24 188 207 185 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 3 16 3.6e-07 0.00046 20.5 1.7 5 25 216 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 4 16 5.4e-10 6.9e-07 29.4 2.4 1 24 240 263 240 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 5 16 4.4e-11 5.6e-08 32.9 1.9 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 6 16 4.5e-11 5.8e-08 32.8 0.3 2 24 297 319 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 7 16 1.7e-10 2.2e-07 31.0 0.6 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 8 16 4.3e-08 5.5e-05 23.4 0.5 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 9 16 5.1e-09 6.6e-06 26.3 2.6 4 24 383 403 383 404 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 10 16 3.8e-07 0.00049 20.4 0.3 4 24 411 431 409 433 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 11 16 1.9e-09 2.4e-06 27.7 1.3 3 26 438 461 437 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 12 16 4.2e-11 5.4e-08 32.9 0.4 1 24 464 487 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 13 16 2.8e-10 3.5e-07 30.3 1.2 2 25 493 516 493 517 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 14 16 4.3e-06 0.0055 17.1 3.9 4 25 523 544 521 545 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 15 16 9.1e-10 1.2e-06 28.7 0.1 1 24 548 571 548 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF221-205 - 617 2.9e-98 318.3 114.1 16 16 0.0029 3.7 8.1 0.1 2 16 577 591 577 593 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 1 15 0.00013 0.16 12.5 0.9 1 23 170 192 170 192 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 2 15 2.7e-06 0.0034 17.7 4.0 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 3 15 1.9e-09 2.4e-06 27.7 2.0 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 4 15 5.4e-05 0.07 13.6 3.4 1 23 254 276 254 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 5 15 1.4e-07 0.00018 21.8 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 6 15 4.1e-07 0.00053 20.3 1.3 1 23 310 332 310 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 7 15 3e-07 0.00039 20.7 1.1 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 8 15 0.0016 2 9.0 5.3 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 9 15 1.4e-05 0.018 15.5 2.3 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 10 15 7.9e-06 0.01 16.3 2.0 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 11 15 2.7e-05 0.035 14.6 0.6 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 12 15 7.9e-06 0.01 16.3 1.4 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 13 15 3e-06 0.0039 17.6 5.1 1 20 506 525 506 528 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 14 15 5.1e-06 0.0065 16.9 1.0 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF221-205 - 617 1.9e-53 176.0 134.1 15 15 7.9e-06 0.01 16.3 1.4 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 1 15 0.0013 1.6 9.7 1.0 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 2 15 0.0015 1.9 9.6 3.7 1 23 198 220 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 3 15 2.3e-06 0.0029 18.3 1.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 4 15 6.4e-06 0.0082 16.9 3.3 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 5 15 0.0008 1 10.4 0.4 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 6 15 4.8e-06 0.0061 17.3 0.8 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 7 15 0.00012 0.16 12.9 0.4 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 8 15 0.00021 0.27 12.2 4.6 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 9 15 0.00041 0.53 11.3 2.6 1 23 394 416 394 417 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 10 15 0.00045 0.57 11.2 1.4 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 11 15 0.00037 0.47 11.4 0.4 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 12 15 0.00081 1 10.4 2.0 1 23 478 500 478 501 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 13 15 0.00062 0.79 10.7 5.3 1 20 506 525 506 528 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 14 15 6.8e-05 0.087 13.7 0.4 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF221-205 - 617 3.9e-32 108.2 129.5 15 15 0.00081 1 10.4 2.0 1 23 562 584 562 585 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF221-205 - 617 5e-23 80.5 0.1 1 2 3.9e-26 5e-23 80.5 0.1 2 42 30 70 29 70 0.98 KRAB box KRAB PF01352.27 42 ZNF221-205 - 617 5e-23 80.5 0.1 2 2 7.4 9.4e+03 -3.6 0.3 14 18 118 122 117 125 0.84 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 1 15 0.006 7.7 6.9 2.8 2 24 170 192 169 198 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 2 15 1.8 2.3e+03 -1.0 0.1 2 11 198 207 197 207 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 3 15 0.0017 2.1 8.7 3.1 2 22 226 246 225 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 4 15 0.00042 0.54 10.6 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 5 15 4.4e-06 0.0056 16.9 0.4 2 22 282 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 6 15 0.031 40 4.7 0.1 2 11 310 319 309 328 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 7 15 0.0094 12 6.3 0.1 2 20 338 356 337 356 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 8 15 1.5 1.9e+03 -0.7 4.0 2 12 366 376 365 384 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 9 15 0.018 23 5.4 0.7 2 12 394 404 393 414 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 10 15 0.00085 1.1 9.6 1.6 2 24 422 444 421 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 11 15 0.002 2.6 8.4 0.2 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 12 15 0.058 74 3.8 0.5 2 11 478 487 477 497 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 13 15 0.0009 1.2 9.6 0.3 2 21 506 525 505 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 14 15 0.00087 1.1 9.6 1.2 2 22 534 554 533 554 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF221-205 - 617 1.6e-11 44.2 96.8 15 15 0.058 74 3.8 0.5 2 11 562 571 561 581 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 1 12 0.00023 0.3 11.3 2.7 6 34 170 205 169 207 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 2 12 0.00075 0.96 9.6 4.0 6 34 226 261 225 264 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 3 12 0.0023 3 8.1 5.2 6 34 254 289 253 291 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 4 12 0.0024 3 8.0 3.9 6 35 282 318 281 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 5 12 0.00076 0.97 9.6 2.3 6 38 310 349 309 350 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 6 12 0.00092 1.2 9.3 4.6 6 34 338 373 337 375 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 7 12 0.0025 3.2 7.9 9.2 6 36 366 403 364 405 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 8 12 5.7e-06 0.0073 16.4 3.1 6 39 422 462 421 463 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 9 12 0.0055 7 6.9 7.3 6 36 478 515 477 517 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 10 12 0.1 1.3e+02 2.8 9.5 6 22 506 528 505 539 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 11 12 0.028 36 4.6 5.9 6 34 534 569 532 572 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF221-205 - 617 2.4e-09 37.1 92.2 12 12 0.03 39 4.5 0.6 6 15 562 571 561 577 0.92 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 1 15 0.014 18 5.4 1.6 2 12 170 180 170 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 2 15 0.022 29 4.8 2.6 2 24 198 220 197 223 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 3 15 0.00063 0.8 9.8 2.8 2 12 226 236 225 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 4 15 0.0088 11 6.1 4.5 2 21 254 273 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 5 15 0.025 32 4.7 0.7 2 11 282 291 282 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 6 15 0.00018 0.23 11.5 0.5 2 12 310 320 310 321 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 7 15 0.00013 0.17 11.9 0.4 2 21 338 357 338 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 8 15 0.055 71 3.6 0.8 2 11 366 375 366 375 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 9 15 0.00037 0.48 10.5 1.1 2 12 394 404 394 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 10 15 0.025 32 4.7 1.2 2 11 422 431 421 433 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 11 15 0.047 60 3.8 0.3 2 12 450 460 450 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 12 15 0.00025 0.33 11.0 0.8 2 12 478 488 478 488 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 13 15 0.038 49 4.1 5.8 2 24 506 528 506 531 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 14 15 0.01 13 5.9 0.8 2 22 534 554 533 557 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF221-205 - 617 5.2e-09 35.9 121.3 15 15 0.00025 0.33 11.0 0.8 2 12 562 572 562 572 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 1 15 0.024 31 4.3 0.1 3 14 170 181 168 188 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 2 15 0.074 94 2.7 1.5 2 12 197 207 196 209 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 3 15 0.0034 4.3 7.0 2.0 2 21 225 245 224 245 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 4 15 0.078 99 2.7 0.1 3 14 254 265 252 272 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 5 15 1.1e-05 0.014 15.0 1.0 3 21 282 301 280 301 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 6 15 0.015 19 4.9 0.1 3 15 310 322 308 329 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 7 15 0.0056 7.1 6.3 0.0 3 20 338 356 336 357 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 8 15 0.092 1.2e+02 2.4 3.0 3 12 366 375 364 385 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 9 15 0.016 21 4.8 0.2 3 12 394 403 392 407 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 10 15 0.0012 1.5 8.4 0.2 2 21 421 441 420 441 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 11 15 0.021 28 4.4 0.2 3 11 450 458 448 469 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 12 15 0.02 26 4.5 0.2 3 12 478 487 476 488 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 13 15 0.00022 0.28 10.8 1.0 3 21 506 525 504 525 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 14 15 0.097 1.2e+02 2.3 0.2 3 11 534 542 532 553 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF221-205 - 617 8.6e-09 34.8 82.5 15 15 0.02 26 4.5 0.2 3 12 562 571 560 572 0.90 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 1 19 2.3e-05 0.023 15.1 0.5 8 25 141 158 138 159 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 2 19 5.4e-07 0.00053 20.3 0.6 2 24 163 185 162 185 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 3 19 5.7e-07 0.00057 20.2 1.7 5 25 194 214 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 4 19 4.6e-10 4.6e-07 30.0 1.5 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 5 19 2.1e-08 2.1e-05 24.7 2.1 2 26 247 271 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 6 19 8.7e-11 8.7e-08 32.3 2.0 1 25 274 298 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 7 19 5.4e-09 5.4e-06 26.6 5.8 1 25 302 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 8 19 3.5e-11 3.5e-08 33.5 1.2 1 24 330 353 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 9 19 4.9e-10 4.9e-07 29.9 0.4 2 24 359 381 358 383 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 10 19 4.1e-10 4.1e-07 30.1 0.6 2 24 387 409 386 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 11 19 5e-10 5e-07 29.9 1.0 1 25 414 438 414 439 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 12 19 1.2e-06 0.0012 19.2 0.4 2 25 443 466 442 467 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 13 19 1.2e-09 1.2e-06 28.6 0.2 2 25 471 494 470 495 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 14 19 6e-11 6e-08 32.8 0.8 2 25 499 522 498 523 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 15 19 4e-10 4e-07 30.2 1.8 2 25 527 550 526 551 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 16 19 1.1e-10 1.1e-07 31.9 1.7 1 25 554 578 554 578 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 17 19 1e-10 1e-07 32.0 0.6 1 25 582 606 582 607 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 18 19 4.6e-11 4.6e-08 33.1 0.2 1 25 610 634 610 635 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-201 - 700 6.9e-136 437.2 150.2 19 19 1e-11 9.9e-09 35.2 1.1 2 25 639 662 638 662 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 1 19 0.13 1.3e+02 3.3 0.2 6 23 150 170 148 170 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 2 19 3.9e-06 0.0039 17.6 4.4 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 3 19 2.1e-09 2.1e-06 27.9 2.1 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 4 19 2.3e-06 0.0023 18.3 2.8 1 23 232 254 232 254 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 5 19 3.6e-08 3.5e-05 24.0 1.1 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 6 19 3.9e-06 0.0039 17.6 3.2 1 23 288 310 288 310 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 7 19 2.4e-07 0.00024 21.4 5.2 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 8 19 1.1e-08 1e-05 25.7 1.6 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 9 19 1.1e-06 0.0011 19.2 0.2 1 23 372 394 372 394 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 10 19 7e-07 0.0007 19.9 1.8 1 23 400 422 400 422 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 11 19 2.3e-08 2.3e-05 24.6 0.5 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 12 19 1.4e-06 0.0014 18.9 0.2 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 13 19 5.8e-07 0.00057 20.2 1.2 1 23 484 506 484 506 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 14 19 4.5e-09 4.5e-06 26.8 0.8 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 15 19 1.3e-09 1.3e-06 28.5 1.4 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 16 19 3.6e-05 0.036 14.5 0.2 1 23 568 590 568 590 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 17 19 2.6e-08 2.5e-05 24.4 0.8 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 18 19 2e-09 2e-06 28.0 1.4 1 23 624 646 624 646 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-201 - 700 8.9e-95 306.2 152.3 19 19 7e-07 0.0007 19.9 1.8 1 23 652 674 652 674 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 1 19 7.9 7.9e+03 -1.7 0.2 7 23 154 170 148 171 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 2 19 0.0008 0.8 10.7 3.7 1 23 176 198 176 199 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 3 19 1.9e-06 0.0019 18.9 1.9 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 4 19 5.3e-05 0.053 14.4 2.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 5 19 0.0016 1.6 9.8 1.0 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 6 19 5.7e-05 0.057 14.3 2.2 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 7 19 4.2e-05 0.042 14.7 4.5 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 8 19 5e-05 0.05 14.5 1.7 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 9 19 0.00034 0.34 11.9 0.3 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 10 19 0.00047 0.46 11.4 1.5 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 11 19 1.9e-06 0.0019 18.9 0.7 1 23 428 450 428 451 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 12 19 6.8e-05 0.067 14.1 0.2 1 23 456 478 456 479 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 13 19 1.2e-05 0.012 16.4 1.0 1 23 484 506 484 507 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 14 19 6.3e-06 0.0063 17.3 1.1 1 23 512 534 512 535 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 15 19 1.4e-06 0.0014 19.3 1.8 1 23 540 562 540 563 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 16 19 0.015 14 6.8 0.2 1 23 568 590 568 591 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 17 19 0.00064 0.63 11.0 1.1 1 23 596 618 596 619 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 18 19 5.9e-07 0.00059 20.5 1.2 1 23 624 646 624 647 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-201 - 700 2.1e-49 161.9 152.2 19 19 4.6e-05 0.046 14.6 1.2 1 23 652 674 652 675 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 1 17 0.61 6e+02 0.9 0.1 2 11 176 185 175 185 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 2 17 0.0026 2.6 8.4 2.5 2 22 204 224 203 224 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 3 17 5e-05 0.05 13.9 0.0 2 22 232 252 231 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 4 17 0.0002 0.2 12.0 0.3 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 5 17 0.00016 0.16 12.3 0.3 2 21 288 307 287 307 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 6 17 0.0013 1.3 9.4 0.6 2 21 344 363 343 364 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 7 17 0.00036 0.36 11.2 0.1 2 21 372 391 371 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 8 17 0.021 21 5.5 0.5 2 21 400 419 399 420 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 9 17 0.0062 6.2 7.2 0.2 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 10 17 0.65 6.5e+02 0.8 0.1 2 20 456 474 455 475 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 11 17 0.00046 0.46 10.8 0.1 2 22 484 504 483 504 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 12 17 0.0013 1.3 9.4 0.1 2 22 512 532 511 532 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 13 17 1.9e-05 0.018 15.3 0.3 2 22 540 560 539 560 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 14 17 0.018 18 5.7 0.0 2 22 568 588 567 588 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 15 17 0.0012 1.2 9.5 0.1 2 21 596 615 595 616 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 16 17 5.3e-05 0.053 13.8 0.1 2 21 624 643 623 644 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-201 - 700 6e-29 99.7 84.2 17 17 0.022 22 5.5 0.1 2 20 652 670 651 670 0.77 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF234-201 - 700 1.3e-21 75.9 0.2 1 1 2.7e-24 2.7e-21 74.9 0.2 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 1 17 0.11 1.1e+02 3.0 1.3 15 34 163 183 148 187 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 2 17 0.00067 0.67 10.1 3.9 6 38 204 243 203 245 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 3 17 0.029 29 4.9 0.5 6 20 232 246 231 254 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 4 17 4.3e-05 0.043 13.9 2.6 6 39 260 300 258 301 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 5 17 0.012 11 6.2 11.7 6 34 316 351 315 355 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 6 17 0.0034 3.4 7.9 5.4 6 34 344 379 343 382 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 7 17 0.0008 0.8 9.9 1.9 6 36 372 409 371 413 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 8 17 8.6e-05 0.086 13.0 2.5 6 37 400 438 398 440 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 9 17 0.028 28 4.9 0.3 6 16 428 438 427 446 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 10 17 0.0001 0.1 12.8 4.6 6 38 456 495 455 497 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 11 17 0.00071 0.71 10.0 6.8 6 34 484 519 483 524 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 12 17 0.00016 0.16 12.1 5.1 6 38 512 551 511 553 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 13 17 0.00024 0.24 11.5 4.8 6 34 540 575 538 578 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 14 17 0.00019 0.19 11.8 2.7 6 35 568 604 567 608 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 15 17 0.00029 0.29 11.3 2.6 6 34 596 631 595 636 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 16 17 0.0016 1.6 8.9 2.9 6 34 624 659 623 660 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-201 - 700 4.4e-14 52.3 105.4 17 17 0.01 10 6.3 0.2 6 16 652 662 650 674 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 1 18 0.024 24 4.6 2.0 2 12 175 185 174 186 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 2 18 0.0019 1.9 8.2 2.1 2 21 203 223 202 223 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 3 18 0.31 3.1e+02 1.1 0.1 3 13 232 242 230 247 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 4 18 0.00072 0.72 9.5 1.1 3 21 260 279 258 279 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 5 18 0.035 35 4.1 0.1 3 12 288 297 286 306 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 6 18 0.027 27 4.5 2.4 3 15 316 328 314 335 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 7 18 0.00071 0.71 9.5 1.4 3 20 344 362 342 363 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 8 18 0.082 81 2.9 0.0 3 21 372 391 370 391 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 9 18 0.023 23 4.7 0.2 3 13 400 410 398 418 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 10 18 0.15 1.5e+02 2.1 0.1 3 14 428 439 426 443 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 11 18 0.0084 8.4 6.1 0.2 3 16 456 470 454 475 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 12 18 0.0094 9.3 5.9 0.1 3 13 484 494 482 500 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 13 18 0.00061 0.61 9.7 0.2 3 21 512 531 510 531 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 14 18 0.00034 0.34 10.5 0.5 3 21 540 559 538 559 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 15 18 0.062 61 3.3 0.1 3 13 568 578 566 587 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 16 18 0.00037 0.37 10.4 0.2 3 20 596 614 594 615 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 17 18 0.0061 6.1 6.5 0.1 3 20 624 642 622 643 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-201 - 700 1.2e-13 50.4 96.6 18 18 0.014 14 5.4 0.1 3 13 652 662 650 671 0.84 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 1 19 8.2 8.1e+03 -2.5 0.1 7 21 154 168 154 168 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 2 19 0.35 3.5e+02 1.8 2.9 2 20 177 195 176 198 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 3 19 0.0012 1.2 9.7 1.5 1 21 204 224 204 226 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 4 19 0.18 1.8e+02 2.7 0.4 1 20 232 251 232 252 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 5 19 0.0091 9 6.8 0.8 1 21 260 280 260 283 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 6 19 0.00094 0.93 10.0 0.8 1 20 288 307 288 308 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 7 19 0.02 20 5.7 3.9 1 21 316 336 316 338 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 8 19 0.0032 3.2 8.3 1.0 1 20 344 363 344 367 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 9 19 0.00047 0.47 10.9 0.1 1 19 372 390 372 392 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 10 19 0.024 24 5.5 1.2 1 20 400 419 400 422 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 11 19 0.00053 0.53 10.7 0.6 1 21 428 448 428 450 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 12 19 1.5 1.5e+03 -0.2 0.1 1 19 456 474 456 476 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 13 19 0.00032 0.32 11.5 0.4 1 22 484 505 484 507 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 14 19 0.0074 7.3 7.1 1.0 1 21 512 532 512 534 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 15 19 0.00025 0.25 11.8 1.2 1 20 540 559 540 562 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 16 19 1.6 1.6e+03 -0.3 0.1 1 19 568 586 568 590 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 17 19 0.11 1.1e+02 3.4 1.0 1 19 596 614 596 618 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 18 19 0.00015 0.15 12.5 0.5 1 19 624 642 624 646 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-201 - 700 1.6e-10 41.0 131.6 19 19 0.0065 6.5 7.3 1.2 1 19 652 670 652 674 0.87 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 1 18 0.0094 9.3 6.4 1.5 3 12 177 186 175 187 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 2 18 0.0054 5.4 7.2 0.3 3 15 205 217 204 223 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 3 18 0.033 32 4.7 0.2 3 12 233 242 231 244 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 4 18 0.01 10 6.2 0.1 3 12 261 270 259 278 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 5 18 0.056 56 3.9 0.1 3 11 289 297 287 303 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 6 18 0.45 4.5e+02 1.0 3.6 3 14 317 328 315 331 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 7 18 0.1 1e+02 3.1 2.1 3 11 345 353 343 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 8 18 0.42 4.2e+02 1.1 0.0 3 13 373 383 371 385 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 9 18 0.029 29 4.8 0.2 3 11 401 409 399 411 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 10 18 0.002 2 8.5 0.1 3 18 429 444 427 447 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 11 18 0.0035 3.5 7.7 0.3 3 14 457 468 455 472 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 12 18 0.0094 9.4 6.4 0.3 3 12 485 494 483 495 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 13 18 0.0061 6.1 7.0 0.1 3 13 513 523 511 531 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 14 18 0.0017 1.7 8.8 0.3 3 14 541 552 539 557 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 15 18 0.025 25 5.0 0.1 3 14 569 580 567 584 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 16 18 0.05 50 4.1 0.1 3 13 597 607 595 610 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 17 18 0.11 1.1e+02 2.9 0.1 3 14 625 636 623 640 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-201 - 700 2.1e-10 40.4 88.3 18 18 0.24 2.4e+02 1.9 0.0 3 11 653 661 651 668 0.90 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 1 18 10 9.9e+03 -3.3 0.3 2 11 148 157 148 158 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 2 18 6.7e-05 0.067 13.2 3.1 2 26 176 200 175 201 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 3 18 0.0012 1.2 9.2 3.1 2 12 204 214 203 226 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 4 18 0.039 39 4.4 0.4 2 12 232 242 232 250 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 5 18 0.097 97 3.1 0.2 2 11 260 269 260 270 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 6 18 0.00028 0.28 11.2 0.9 2 20 288 306 288 307 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 7 18 3 3e+03 -1.6 5.1 2 11 344 353 344 353 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 8 18 0.008 7.9 6.6 0.6 2 11 372 381 372 388 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 9 18 0.00019 0.18 11.8 0.4 2 12 400 410 400 411 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 10 18 0.0071 7 6.8 0.7 2 12 428 438 428 451 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 11 18 0.38 3.8e+02 1.2 0.6 2 12 456 466 456 467 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 12 18 0.0073 7.3 6.7 0.1 2 12 484 494 484 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 13 18 0.0017 1.7 8.7 0.6 2 12 512 522 512 536 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 14 18 0.0015 1.5 8.9 1.8 2 17 540 555 540 564 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 15 18 0.032 32 4.7 0.2 2 12 568 578 568 590 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 16 18 0.17 1.7e+02 2.4 0.4 2 12 596 606 596 616 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 17 18 5.8e-05 0.058 13.4 0.7 2 21 624 643 624 648 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-201 - 700 3.4e-07 30.1 138.1 18 18 0.0032 3.2 7.9 0.6 2 12 652 662 652 674 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF234-203 - 53 1.8e-23 81.9 0.2 1 1 1.2e-27 2.1e-23 81.7 0.2 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 1 19 2.3e-05 0.023 15.1 0.5 8 25 141 158 138 159 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 2 19 5.4e-07 0.00053 20.3 0.6 2 24 163 185 162 185 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 3 19 5.7e-07 0.00057 20.2 1.7 5 25 194 214 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 4 19 4.6e-10 4.6e-07 30.0 1.5 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 5 19 2.1e-08 2.1e-05 24.7 2.1 2 26 247 271 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 6 19 8.7e-11 8.7e-08 32.3 2.0 1 25 274 298 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 7 19 5.4e-09 5.4e-06 26.6 5.8 1 25 302 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 8 19 3.5e-11 3.5e-08 33.5 1.2 1 24 330 353 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 9 19 4.9e-10 4.9e-07 29.9 0.4 2 24 359 381 358 383 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 10 19 4.1e-10 4.1e-07 30.1 0.6 2 24 387 409 386 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 11 19 5e-10 5e-07 29.9 1.0 1 25 414 438 414 439 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 12 19 1.2e-06 0.0012 19.2 0.4 2 25 443 466 442 467 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 13 19 1.2e-09 1.2e-06 28.6 0.2 2 25 471 494 470 495 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 14 19 6e-11 6e-08 32.8 0.8 2 25 499 522 498 523 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 15 19 4e-10 4e-07 30.2 1.8 2 25 527 550 526 551 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 16 19 1.1e-10 1.1e-07 31.9 1.7 1 25 554 578 554 578 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 17 19 1e-10 1e-07 32.0 0.6 1 25 582 606 582 607 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 18 19 4.6e-11 4.6e-08 33.1 0.2 1 25 610 634 610 635 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF234-204 - 700 6.9e-136 437.2 150.2 19 19 1e-11 9.9e-09 35.2 1.1 2 25 639 662 638 662 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 1 19 0.13 1.3e+02 3.3 0.2 6 23 150 170 148 170 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 2 19 3.9e-06 0.0039 17.6 4.4 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 3 19 2.1e-09 2.1e-06 27.9 2.1 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 4 19 2.3e-06 0.0023 18.3 2.8 1 23 232 254 232 254 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 5 19 3.6e-08 3.5e-05 24.0 1.1 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 6 19 3.9e-06 0.0039 17.6 3.2 1 23 288 310 288 310 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 7 19 2.4e-07 0.00024 21.4 5.2 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 8 19 1.1e-08 1e-05 25.7 1.6 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 9 19 1.1e-06 0.0011 19.2 0.2 1 23 372 394 372 394 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 10 19 7e-07 0.0007 19.9 1.8 1 23 400 422 400 422 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 11 19 2.3e-08 2.3e-05 24.6 0.5 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 12 19 1.4e-06 0.0014 18.9 0.2 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 13 19 5.8e-07 0.00057 20.2 1.2 1 23 484 506 484 506 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 14 19 4.5e-09 4.5e-06 26.8 0.8 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 15 19 1.3e-09 1.3e-06 28.5 1.4 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 16 19 3.6e-05 0.036 14.5 0.2 1 23 568 590 568 590 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 17 19 2.6e-08 2.5e-05 24.4 0.8 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 18 19 2e-09 2e-06 28.0 1.4 1 23 624 646 624 646 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF234-204 - 700 8.9e-95 306.2 152.3 19 19 7e-07 0.0007 19.9 1.8 1 23 652 674 652 674 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 1 19 7.9 7.9e+03 -1.7 0.2 7 23 154 170 148 171 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 2 19 0.0008 0.8 10.7 3.7 1 23 176 198 176 199 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 3 19 1.9e-06 0.0019 18.9 1.9 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 4 19 5.3e-05 0.053 14.4 2.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 5 19 0.0016 1.6 9.8 1.0 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 6 19 5.7e-05 0.057 14.3 2.2 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 7 19 4.2e-05 0.042 14.7 4.5 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 8 19 5e-05 0.05 14.5 1.7 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 9 19 0.00034 0.34 11.9 0.3 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 10 19 0.00047 0.46 11.4 1.5 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 11 19 1.9e-06 0.0019 18.9 0.7 1 23 428 450 428 451 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 12 19 6.8e-05 0.067 14.1 0.2 1 23 456 478 456 479 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 13 19 1.2e-05 0.012 16.4 1.0 1 23 484 506 484 507 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 14 19 6.3e-06 0.0063 17.3 1.1 1 23 512 534 512 535 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 15 19 1.4e-06 0.0014 19.3 1.8 1 23 540 562 540 563 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 16 19 0.015 14 6.8 0.2 1 23 568 590 568 591 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 17 19 0.00064 0.63 11.0 1.1 1 23 596 618 596 619 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 18 19 5.9e-07 0.00059 20.5 1.2 1 23 624 646 624 647 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF234-204 - 700 2.1e-49 161.9 152.2 19 19 4.6e-05 0.046 14.6 1.2 1 23 652 674 652 675 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 1 17 0.61 6e+02 0.9 0.1 2 11 176 185 175 185 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 2 17 0.0026 2.6 8.4 2.5 2 22 204 224 203 224 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 3 17 5e-05 0.05 13.9 0.0 2 22 232 252 231 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 4 17 0.0002 0.2 12.0 0.3 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 5 17 0.00016 0.16 12.3 0.3 2 21 288 307 287 307 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 6 17 0.0013 1.3 9.4 0.6 2 21 344 363 343 364 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 7 17 0.00036 0.36 11.2 0.1 2 21 372 391 371 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 8 17 0.021 21 5.5 0.5 2 21 400 419 399 420 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 9 17 0.0062 6.2 7.2 0.2 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 10 17 0.65 6.5e+02 0.8 0.1 2 20 456 474 455 475 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 11 17 0.00046 0.46 10.8 0.1 2 22 484 504 483 504 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 12 17 0.0013 1.3 9.4 0.1 2 22 512 532 511 532 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 13 17 1.9e-05 0.018 15.3 0.3 2 22 540 560 539 560 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 14 17 0.018 18 5.7 0.0 2 22 568 588 567 588 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 15 17 0.0012 1.2 9.5 0.1 2 21 596 615 595 616 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 16 17 5.3e-05 0.053 13.8 0.1 2 21 624 643 623 644 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF234-204 - 700 6e-29 99.7 84.2 17 17 0.022 22 5.5 0.1 2 20 652 670 651 670 0.77 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF234-204 - 700 1.3e-21 75.9 0.2 1 1 2.7e-24 2.7e-21 74.9 0.2 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 1 17 0.11 1.1e+02 3.0 1.3 15 34 163 183 148 187 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 2 17 0.00067 0.67 10.1 3.9 6 38 204 243 203 245 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 3 17 0.029 29 4.9 0.5 6 20 232 246 231 254 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 4 17 4.3e-05 0.043 13.9 2.6 6 39 260 300 258 301 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 5 17 0.012 11 6.2 11.7 6 34 316 351 315 355 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 6 17 0.0034 3.4 7.9 5.4 6 34 344 379 343 382 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 7 17 0.0008 0.8 9.9 1.9 6 36 372 409 371 413 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 8 17 8.6e-05 0.086 13.0 2.5 6 37 400 438 398 440 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 9 17 0.028 28 4.9 0.3 6 16 428 438 427 446 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 10 17 0.0001 0.1 12.8 4.6 6 38 456 495 455 497 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 11 17 0.00071 0.71 10.0 6.8 6 34 484 519 483 524 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 12 17 0.00016 0.16 12.1 5.1 6 38 512 551 511 553 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 13 17 0.00024 0.24 11.5 4.8 6 34 540 575 538 578 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 14 17 0.00019 0.19 11.8 2.7 6 35 568 604 567 608 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 15 17 0.00029 0.29 11.3 2.6 6 34 596 631 595 636 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 16 17 0.0016 1.6 8.9 2.9 6 34 624 659 623 660 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF234-204 - 700 4.4e-14 52.3 105.4 17 17 0.01 10 6.3 0.2 6 16 652 662 650 674 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 1 18 0.024 24 4.6 2.0 2 12 175 185 174 186 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 2 18 0.0019 1.9 8.2 2.1 2 21 203 223 202 223 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 3 18 0.31 3.1e+02 1.1 0.1 3 13 232 242 230 247 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 4 18 0.00072 0.72 9.5 1.1 3 21 260 279 258 279 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 5 18 0.035 35 4.1 0.1 3 12 288 297 286 306 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 6 18 0.027 27 4.5 2.4 3 15 316 328 314 335 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 7 18 0.00071 0.71 9.5 1.4 3 20 344 362 342 363 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 8 18 0.082 81 2.9 0.0 3 21 372 391 370 391 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 9 18 0.023 23 4.7 0.2 3 13 400 410 398 418 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 10 18 0.15 1.5e+02 2.1 0.1 3 14 428 439 426 443 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 11 18 0.0084 8.4 6.1 0.2 3 16 456 470 454 475 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 12 18 0.0094 9.3 5.9 0.1 3 13 484 494 482 500 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 13 18 0.00061 0.61 9.7 0.2 3 21 512 531 510 531 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 14 18 0.00034 0.34 10.5 0.5 3 21 540 559 538 559 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 15 18 0.062 61 3.3 0.1 3 13 568 578 566 587 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 16 18 0.00037 0.37 10.4 0.2 3 20 596 614 594 615 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 17 18 0.0061 6.1 6.5 0.1 3 20 624 642 622 643 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF234-204 - 700 1.2e-13 50.4 96.6 18 18 0.014 14 5.4 0.1 3 13 652 662 650 671 0.84 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 1 19 8.2 8.1e+03 -2.5 0.1 7 21 154 168 154 168 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 2 19 0.35 3.5e+02 1.8 2.9 2 20 177 195 176 198 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 3 19 0.0012 1.2 9.7 1.5 1 21 204 224 204 226 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 4 19 0.18 1.8e+02 2.7 0.4 1 20 232 251 232 252 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 5 19 0.0091 9 6.8 0.8 1 21 260 280 260 283 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 6 19 0.00094 0.93 10.0 0.8 1 20 288 307 288 308 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 7 19 0.02 20 5.7 3.9 1 21 316 336 316 338 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 8 19 0.0032 3.2 8.3 1.0 1 20 344 363 344 367 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 9 19 0.00047 0.47 10.9 0.1 1 19 372 390 372 392 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 10 19 0.024 24 5.5 1.2 1 20 400 419 400 422 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 11 19 0.00053 0.53 10.7 0.6 1 21 428 448 428 450 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 12 19 1.5 1.5e+03 -0.2 0.1 1 19 456 474 456 476 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 13 19 0.00032 0.32 11.5 0.4 1 22 484 505 484 507 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 14 19 0.0074 7.3 7.1 1.0 1 21 512 532 512 534 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 15 19 0.00025 0.25 11.8 1.2 1 20 540 559 540 562 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 16 19 1.6 1.6e+03 -0.3 0.1 1 19 568 586 568 590 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 17 19 0.11 1.1e+02 3.4 1.0 1 19 596 614 596 618 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 18 19 0.00015 0.15 12.5 0.5 1 19 624 642 624 646 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF234-204 - 700 1.6e-10 41.0 131.6 19 19 0.0065 6.5 7.3 1.2 1 19 652 670 652 674 0.87 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 1 18 0.0094 9.3 6.4 1.5 3 12 177 186 175 187 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 2 18 0.0054 5.4 7.2 0.3 3 15 205 217 204 223 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 3 18 0.033 32 4.7 0.2 3 12 233 242 231 244 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 4 18 0.01 10 6.2 0.1 3 12 261 270 259 278 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 5 18 0.056 56 3.9 0.1 3 11 289 297 287 303 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 6 18 0.45 4.5e+02 1.0 3.6 3 14 317 328 315 331 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 7 18 0.1 1e+02 3.1 2.1 3 11 345 353 343 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 8 18 0.42 4.2e+02 1.1 0.0 3 13 373 383 371 385 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 9 18 0.029 29 4.8 0.2 3 11 401 409 399 411 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 10 18 0.002 2 8.5 0.1 3 18 429 444 427 447 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 11 18 0.0035 3.5 7.7 0.3 3 14 457 468 455 472 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 12 18 0.0094 9.4 6.4 0.3 3 12 485 494 483 495 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 13 18 0.0061 6.1 7.0 0.1 3 13 513 523 511 531 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 14 18 0.0017 1.7 8.8 0.3 3 14 541 552 539 557 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 15 18 0.025 25 5.0 0.1 3 14 569 580 567 584 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 16 18 0.05 50 4.1 0.1 3 13 597 607 595 610 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 17 18 0.11 1.1e+02 2.9 0.1 3 14 625 636 623 640 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF234-204 - 700 2.1e-10 40.4 88.3 18 18 0.24 2.4e+02 1.9 0.0 3 11 653 661 651 668 0.90 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 1 18 10 9.9e+03 -3.3 0.3 2 11 148 157 148 158 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 2 18 6.7e-05 0.067 13.2 3.1 2 26 176 200 175 201 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 3 18 0.0012 1.2 9.2 3.1 2 12 204 214 203 226 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 4 18 0.039 39 4.4 0.4 2 12 232 242 232 250 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 5 18 0.097 97 3.1 0.2 2 11 260 269 260 270 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 6 18 0.00028 0.28 11.2 0.9 2 20 288 306 288 307 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 7 18 3 3e+03 -1.6 5.1 2 11 344 353 344 353 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 8 18 0.008 7.9 6.6 0.6 2 11 372 381 372 388 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 9 18 0.00019 0.18 11.8 0.4 2 12 400 410 400 411 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 10 18 0.0071 7 6.8 0.7 2 12 428 438 428 451 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 11 18 0.38 3.8e+02 1.2 0.6 2 12 456 466 456 467 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 12 18 0.0073 7.3 6.7 0.1 2 12 484 494 484 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 13 18 0.0017 1.7 8.7 0.6 2 12 512 522 512 536 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 14 18 0.0015 1.5 8.9 1.8 2 17 540 555 540 564 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 15 18 0.032 32 4.7 0.2 2 12 568 578 568 590 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 16 18 0.17 1.7e+02 2.4 0.4 2 12 596 606 596 616 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 17 18 5.8e-05 0.058 13.4 0.7 2 21 624 643 624 648 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF234-204 - 700 3.4e-07 30.1 138.1 18 18 0.0032 3.2 7.9 0.6 2 12 652 662 652 674 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 1 15 3.6e-05 0.027 14.9 0.7 7 26 201 220 200 220 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 2 15 3.9e-11 2.9e-08 33.8 0.9 1 26 223 248 223 248 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 3 15 8e-08 5.9e-05 23.3 2.0 1 24 251 274 251 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 4 15 4.9e-09 3.7e-06 27.1 0.7 1 25 279 303 279 304 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 5 15 1.3e-08 9.4e-06 25.8 0.1 3 25 309 331 308 332 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 6 15 2.2e-11 1.7e-08 34.5 1.9 2 25 336 359 335 360 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 7 15 1.5e-10 1.1e-07 31.9 0.5 2 25 364 387 363 388 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 8 15 2.8e-08 2.1e-05 24.7 0.6 4 24 394 414 391 415 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 9 15 1.4e-10 1e-07 32.0 0.9 1 25 419 443 419 444 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 10 15 2e-11 1.5e-08 34.7 0.2 2 25 448 471 447 472 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 11 15 1.1e-09 8.6e-07 29.1 0.1 2 25 476 499 475 500 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 12 15 0.28 2.1e+02 2.6 1.4 3 14 505 516 504 521 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 13 15 0.015 11 6.7 0.0 8 25 559 576 556 576 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 14 15 1.8e-05 0.013 15.9 0.1 8 25 587 604 585 604 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF251-201 - 671 4.3e-90 292.5 90.9 15 15 8.8e-05 0.066 13.7 0.4 4 25 611 632 609 633 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 1 13 1.3e-08 9.7e-06 25.8 2.9 1 23 209 231 209 231 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 2 13 3.1e-06 0.0023 18.3 3.9 1 23 237 259 237 259 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 3 13 5.1e-07 0.00038 20.8 1.9 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 4 13 6.8e-07 0.00051 20.4 0.1 3 23 295 315 293 315 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 5 13 2.9e-08 2.2e-05 24.7 0.5 1 23 321 343 321 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 6 13 9.7e-08 7.3e-05 23.0 2.6 1 23 349 371 349 371 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 7 13 7.9e-07 0.00059 20.2 4.5 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 8 13 1.8e-07 0.00014 22.2 0.5 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 9 13 3.3e-09 2.5e-06 27.6 0.6 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 10 13 4.1e-09 3.1e-06 27.3 0.3 1 23 461 483 461 483 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 11 13 7.5e-09 5.6e-06 26.5 0.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 12 13 4.6e-06 0.0034 17.7 0.2 1 23 594 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF251-201 - 671 2.9e-67 219.5 93.2 13 13 0.8 6e+02 1.2 0.1 6 17 624 638 621 638 0.78 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 1 12 3.7e-07 0.00028 21.5 1.8 1 23 209 231 209 232 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 2 12 0.012 9.1 7.4 2.2 1 20 237 258 237 260 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 3 12 0.00015 0.11 13.4 1.2 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 4 12 0.0002 0.15 13.0 0.1 2 23 294 315 293 316 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 5 12 2.1e-05 0.016 16.0 0.4 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 6 12 8.6e-06 0.0064 17.2 2.3 1 23 349 371 349 372 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 7 12 0.00069 0.52 11.3 3.8 1 23 377 399 377 400 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 8 12 0.00078 0.59 11.1 0.5 1 23 405 427 405 428 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 9 12 3.7e-05 0.028 15.3 0.6 1 23 433 455 433 456 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 10 12 0.00018 0.14 13.1 0.5 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 11 12 8.1e-05 0.061 14.2 0.3 3 23 491 511 489 512 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF251-201 - 671 4.5e-33 111.1 89.1 12 12 3.9e-05 0.029 15.2 0.2 1 23 594 616 594 617 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF251-201 - 671 8.2e-22 76.6 0.0 1 1 2.1e-24 1.6e-21 75.7 0.0 1 42 14 55 14 55 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 1 11 0.00011 0.085 13.2 2.5 2 24 209 231 208 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 2 11 0.036 27 5.2 0.0 2 12 265 275 264 285 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 3 11 0.025 19 5.7 0.0 4 20 295 311 292 312 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 4 11 0.1 75 3.8 0.0 2 22 321 341 320 341 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 5 11 0.00011 0.086 13.2 0.1 2 22 349 369 348 369 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 6 11 3 2.2e+03 -0.9 0.1 2 12 377 387 376 392 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 7 11 5.5 4.1e+03 -1.7 0.1 2 20 405 423 404 425 0.67 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 8 11 0.0034 2.5 8.5 0.0 2 21 433 452 432 453 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 9 11 0.0064 4.8 7.6 0.1 4 22 463 481 460 481 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 10 11 0.023 17 5.8 0.0 2 22 489 509 488 509 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF251-201 - 671 6.8e-14 51.7 33.4 11 11 0.14 1e+02 3.3 0.2 2 21 594 613 593 616 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 1 8 0.0067 5 7.3 2.3 6 35 209 245 208 249 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 2 8 0.00026 0.19 11.8 1.1 6 38 265 304 264 305 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 3 8 5.9e-06 0.0044 17.1 3.0 6 38 321 360 320 361 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 4 8 0.0027 2 8.6 3.1 7 34 378 412 376 414 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 5 8 2.5e-05 0.019 15.1 1.4 6 38 405 444 404 446 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 6 8 6.2e-05 0.046 13.8 1.5 6 38 461 500 460 502 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 7 8 0.011 8.2 6.6 0.1 6 17 489 506 488 520 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF251-201 - 671 2.8e-12 46.5 53.3 8 8 0.0058 4.4 7.5 1.0 6 17 594 609 593 626 0.68 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 1 12 2.1e-06 0.0016 18.4 0.9 1 24 208 231 208 234 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 2 12 2.9 2.2e+03 -1.2 0.1 2 11 237 246 237 247 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 3 12 0.00099 0.74 9.9 3.3 2 25 265 284 265 286 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 4 12 0.027 20 5.3 0.2 2 22 293 313 293 317 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 5 12 0.011 8.3 6.5 0.2 2 12 321 331 321 343 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 6 12 0.0015 1.1 9.3 2.2 2 22 349 369 349 373 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 7 12 0.0067 5 7.2 2.7 2 13 377 388 377 400 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 8 12 0.026 19 5.4 0.4 2 12 405 415 405 423 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 9 12 0.0013 0.95 9.5 0.3 2 22 433 453 433 457 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 10 12 0.083 62 3.7 0.2 2 12 461 471 461 480 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 11 12 1.1 8.5e+02 0.1 0.3 4 24 491 511 489 514 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF251-201 - 671 1.1e-09 38.0 75.2 12 12 0.0075 5.6 7.1 0.3 2 12 594 604 594 605 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 1 12 0.39 2.9e+02 1.6 0.2 3 12 210 219 208 224 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 2 12 0.51 3.8e+02 1.2 0.0 3 14 238 249 236 250 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 3 12 0.0038 2.8 8.0 0.2 3 12 266 275 264 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 4 12 0.057 42 4.3 0.2 4 14 295 305 294 308 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 5 12 0.015 12 6.1 0.1 3 14 322 333 320 337 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 6 12 0.03 22 5.2 0.3 3 14 350 361 348 364 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 7 12 0.0091 6.8 6.8 0.2 3 14 378 389 376 395 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 8 12 0.091 68 3.6 0.0 3 12 406 415 404 423 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 9 12 0.012 8.7 6.5 0.0 3 14 434 445 432 449 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 10 12 0.0046 3.4 7.8 0.2 3 14 462 473 460 477 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 11 12 0.23 1.7e+02 2.3 0.0 3 12 490 499 488 507 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF251-201 - 671 2.6e-09 36.9 41.9 12 12 0.036 27 4.9 0.1 3 12 595 604 593 612 0.84 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 1 12 0.15 1.1e+02 2.5 0.1 3 18 209 225 208 228 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 2 12 0.11 82 2.9 0.1 3 14 237 248 235 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 3 12 0.013 9.4 5.9 0.1 3 12 265 274 263 279 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 4 12 0.082 61 3.3 0.0 4 20 294 311 291 312 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 5 12 0.003 2.2 7.9 0.2 3 21 321 340 319 340 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 6 12 0.033 25 4.6 1.0 4 21 350 368 347 368 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 7 12 0.076 57 3.4 0.1 3 15 377 389 375 392 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 8 12 0.059 44 3.8 0.1 3 20 405 423 403 423 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 9 12 0.022 16 5.2 0.1 3 15 433 445 431 452 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 10 12 0.01 7.7 6.2 0.1 3 20 461 479 459 480 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 11 12 0.039 29 4.3 0.1 3 20 489 507 487 508 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF251-201 - 671 3e-07 29.9 44.6 12 12 0.036 27 4.5 0.1 3 14 594 605 592 613 0.75 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 1 8 0.00033 0.25 12.1 1.1 28 79 199 250 180 253 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 2 8 0.061 46 4.9 0.1 33 77 260 304 254 308 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 3 8 0.0061 4.6 8.1 5.7 39 78 322 361 305 392 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 4 8 0.002 1.5 9.6 0.7 30 75 369 414 362 420 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 5 8 0.00068 0.5 11.1 0.3 32 77 399 444 392 452 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 6 8 0.0008 0.6 10.9 1.0 30 79 425 474 419 479 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 7 8 0.02 15 6.4 1.7 31 76 454 499 448 524 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF251-201 - 671 5.1e-07 30.4 39.7 8 8 0.15 1.1e+02 3.7 0.4 59 77 587 605 553 636 0.59 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF251-202 - 46 9.9e-20 69.9 0.0 1 1 6.3e-24 1.1e-19 69.7 0.0 1 36 2 37 2 38 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF251-203 - 109 5.7e-23 80.3 0.0 1 1 4.9e-27 8.8e-23 79.7 0.0 1 42 14 55 14 55 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 1 11 0.045 30 5.3 0.1 15 24 48 57 35 58 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 2 11 4.4e-06 0.0029 18.0 0.0 2 24 63 85 63 86 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 3 11 2.7e-05 0.018 15.4 0.3 13 26 126 139 118 139 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 4 11 5.8e-09 3.9e-06 27.0 0.2 1 25 142 166 142 167 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 5 11 3.6e-08 2.4e-05 24.6 2.4 1 24 170 193 170 194 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 6 11 2.4e-07 0.00016 22.0 0.7 2 24 199 221 198 222 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 7 11 6.5e-07 0.00043 20.6 0.4 2 25 227 250 226 251 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 8 11 1e-10 6.9e-08 32.6 0.4 2 25 255 278 254 279 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 9 11 6.7e-08 4.4e-05 23.7 0.1 2 24 283 305 282 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 10 11 7.6e-10 5e-07 29.9 0.4 2 25 311 334 310 335 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-201 - 376 1.9e-58 192.4 69.0 11 11 9.3e-07 0.00062 20.1 0.6 1 26 338 363 338 363 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 1 11 4.6e-05 0.03 14.8 0.2 1 23 48 70 48 70 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 2 11 1.7e-05 0.011 16.1 0.1 2 23 77 98 76 98 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 3 11 1.4e-07 9.4e-05 22.7 0.3 1 23 128 150 128 150 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 4 11 1.9e-07 0.00012 22.3 2.6 1 23 156 178 156 178 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 5 11 0.00074 0.49 10.9 0.7 1 23 184 206 184 206 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 6 11 2e-06 0.0013 19.0 0.0 1 23 212 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 7 11 6.9e-08 4.6e-05 23.7 2.4 3 23 242 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 8 11 1.3e-07 8.8e-05 22.8 0.1 1 23 268 290 268 290 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 9 11 2e-08 1.3e-05 25.3 0.0 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 10 11 5.4e-09 3.6e-06 27.1 0.9 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-201 - 376 7.4e-57 186.8 63.9 11 11 1.4e-06 0.00093 19.5 4.0 2 22 353 373 352 375 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 1 11 0.0002 0.14 13.1 0.4 1 23 48 70 48 71 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 2 11 0.00015 0.1 13.5 0.1 2 23 77 98 76 99 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 3 11 1.4e-06 0.00093 19.8 0.4 1 23 128 150 128 151 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 4 11 7.1e-05 0.047 14.5 2.1 3 23 158 178 156 179 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 5 11 1.1e-05 0.0075 17.0 0.6 1 23 184 206 184 207 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 6 11 0.00017 0.11 13.3 0.1 3 23 214 234 212 235 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 7 11 7.8e-06 0.0052 17.5 1.6 2 23 241 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 8 11 2.5e-05 0.017 15.9 0.2 1 23 268 290 268 291 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 9 11 2.1e-05 0.014 16.2 0.1 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 10 11 2.2e-06 0.0014 19.2 0.6 1 23 324 346 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-201 - 376 5.5e-42 138.8 65.8 11 11 2.7e-06 0.0018 19.0 4.4 2 24 353 375 352 375 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 1 11 5.6 3.7e+03 -1.6 0.2 2 7 48 53 47 58 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 2 11 0.0022 1.5 9.2 0.0 2 24 76 98 75 99 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 3 11 9.2e-05 0.061 13.6 0.0 2 22 128 148 127 148 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 4 11 0.057 38 4.7 0.1 2 12 156 166 155 171 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 5 11 0.00025 0.17 12.3 0.1 2 22 184 204 183 204 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 6 11 0.028 19 5.7 0.0 2 22 212 232 211 232 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 7 11 0.0034 2.3 8.6 0.0 4 21 242 259 239 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 8 11 0.91 6.1e+02 0.9 0.0 2 20 268 286 267 287 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 9 11 0.028 18 5.7 0.0 2 21 296 315 295 316 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 10 11 0.8 5.3e+02 1.1 0.0 2 21 324 343 323 344 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-201 - 376 2.9e-21 75.2 13.1 11 11 0.00095 0.63 10.4 0.2 4 21 354 371 353 374 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 1 11 0.019 12 6.0 0.7 1 12 47 58 47 58 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 2 11 0.0069 4.6 7.4 0.1 3 24 77 98 76 100 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 3 11 0.0002 0.14 12.2 1.1 2 25 128 151 128 153 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 4 11 0.045 30 4.8 1.2 2 12 156 166 156 181 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 5 11 0.54 3.6e+02 1.3 0.3 2 21 184 203 184 207 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 6 11 0.0051 3.4 7.8 0.1 2 22 212 232 212 236 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 7 11 0.00048 0.32 11.0 1.0 2 24 240 262 240 265 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 8 11 0.042 28 4.9 0.3 2 20 268 286 268 293 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 9 11 0.0048 3.2 7.9 0.1 2 24 296 318 296 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 10 11 0.00022 0.15 12.1 0.6 2 24 324 346 324 348 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-201 - 376 6.3e-13 48.4 64.7 11 11 9e-05 0.059 13.4 2.2 3 25 353 375 353 376 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 1 9 0.0014 0.9 9.7 2.0 6 34 48 83 46 88 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 2 9 0.039 26 5.0 0.3 7 22 77 92 73 98 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 3 9 0.0028 1.8 8.7 7.1 6 34 128 163 127 166 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 4 9 0.0015 0.98 9.6 3.1 6 34 156 191 155 197 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 5 9 3.7e-07 0.00024 21.1 0.9 6 38 212 251 211 252 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 6 9 0.00063 0.42 10.8 2.1 6 36 268 305 267 307 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 7 9 0.00027 0.18 12.0 3.0 6 38 296 335 294 336 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 8 9 0.001 0.68 10.1 5.3 6 38 324 363 322 365 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-201 - 376 3.7e-12 46.2 51.1 9 9 0.022 15 5.8 0.8 7 21 353 367 349 375 0.75 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 1 11 0.065 43 3.8 0.1 2 12 47 57 46 67 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 2 11 0.0062 4.1 7.1 0.1 3 21 76 95 74 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 3 11 0.002 1.3 8.7 0.1 3 18 128 144 126 147 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 4 11 0.0099 6.5 6.4 0.1 3 15 156 168 154 171 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 5 11 0.44 2.9e+02 1.1 0.1 3 21 184 203 182 203 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 6 11 0.0039 2.6 7.7 0.0 3 21 212 231 211 231 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 7 11 0.027 18 5.0 0.1 3 20 240 258 238 259 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 8 11 0.0015 1 9.0 0.0 3 20 268 286 266 287 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 9 11 0.052 34 4.1 0.0 3 13 296 306 294 315 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 10 11 0.012 8.1 6.1 0.1 3 12 324 333 322 339 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-201 - 376 1.8e-11 43.4 37.4 11 11 0.066 44 3.8 1.0 5 21 354 371 352 371 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 1 6 0.015 9.8 6.5 0.2 36 91 48 102 23 109 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 2 6 0.0022 1.4 9.2 0.1 65 91 126 152 109 155 0.88 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 3 6 0.0013 0.87 9.9 3.9 32 88 124 177 120 185 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 4 6 3.8e-05 0.025 14.9 0.6 34 90 182 235 176 243 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 5 6 0.0012 0.79 10.1 0.5 41 90 243 291 237 296 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-201 - 376 1.6e-08 34.8 30.5 6 6 0.0064 4.3 7.7 0.7 41 90 299 347 290 356 0.81 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 1 6 0.013 8.8 7.2 0.1 37 77 47 87 42 95 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 2 6 0.0017 1.1 10.0 1.2 34 77 124 167 117 174 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 3 6 0.021 14 6.5 0.9 33 74 179 220 171 254 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 4 6 0.001 0.66 10.8 0.3 36 78 238 280 229 283 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 5 6 0.0022 1.5 9.7 1.1 31 73 261 303 241 311 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-201 - 376 7.7e-07 29.8 27.2 6 6 0.011 7.4 7.4 3.5 37 76 323 362 284 367 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 1 8 0.048 26 5.5 0.1 15 24 101 110 88 111 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 2 8 4.7e-06 0.0025 18.2 0.0 2 24 116 138 116 139 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 3 8 2.9e-05 0.016 15.7 0.3 13 26 179 192 171 192 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 4 8 6.2e-09 3.3e-06 27.3 0.2 1 25 195 219 195 220 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 5 8 3.8e-08 2e-05 24.8 2.4 1 24 223 246 223 247 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 6 8 2.5e-07 0.00013 22.2 0.7 2 24 252 274 251 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 7 8 6.9e-07 0.00036 20.8 0.4 2 25 280 303 279 304 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-202 - 329 8.5e-38 127.1 44.3 8 8 6.6e-07 0.00035 20.9 0.2 2 17 308 323 307 325 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 1 7 4.9e-05 0.026 15.0 0.2 1 23 101 123 101 123 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 2 7 1.8e-05 0.0095 16.3 0.1 2 23 130 151 129 151 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 3 7 1.5e-07 7.9e-05 22.9 0.3 1 23 181 203 181 203 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 4 7 2e-07 0.0001 22.5 2.6 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 5 7 0.00079 0.42 11.2 0.7 1 23 237 259 237 259 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 6 7 2.2e-06 0.0011 19.3 0.0 1 23 265 287 265 287 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-202 - 329 1.7e-32 110.0 37.1 7 7 7.3e-08 3.9e-05 23.9 2.4 3 23 295 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 1 7 0.00022 0.11 13.3 0.4 1 23 101 123 101 124 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 2 7 0.00016 0.086 13.7 0.1 2 23 130 151 129 152 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 3 7 1.5e-06 0.00078 20.1 0.4 1 23 181 203 181 204 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 4 7 7.6e-05 0.04 14.8 2.1 3 23 211 231 209 232 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 5 7 1.2e-05 0.0064 17.2 0.6 1 23 237 259 237 260 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 6 7 0.00018 0.096 13.6 0.1 3 23 267 287 265 288 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-202 - 329 2.3e-25 87.1 38.1 7 7 8.3e-06 0.0044 17.7 1.6 2 23 294 315 293 316 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 1 7 6.1 3.2e+03 -1.4 0.2 2 7 101 106 100 111 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 2 7 0.0024 1.3 9.4 0.0 2 24 129 151 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 3 7 9.9e-05 0.052 13.9 0.0 2 22 181 201 180 201 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 4 7 0.061 32 5.0 0.1 2 12 209 219 208 224 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 5 7 0.00027 0.14 12.5 0.1 2 22 237 257 236 257 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 6 7 0.03 16 5.9 0.0 2 22 265 285 264 285 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-202 - 329 2.3e-15 56.4 8.6 7 7 0.0037 1.9 8.8 0.0 4 21 295 312 292 313 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF275-202 - 329 1e-08 35.1 29.3 1 5 0.0013 0.71 10.0 1.9 6 34 101 136 99 141 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-202 - 329 1e-08 35.1 29.3 2 5 0.037 20 5.4 0.2 7 22 130 145 128 153 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-202 - 329 1e-08 35.1 29.3 3 5 0.0029 1.5 9.0 7.1 6 34 181 216 180 219 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-202 - 329 1e-08 35.1 29.3 4 5 0.0018 0.95 9.6 3.3 6 34 209 244 208 250 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-202 - 329 1e-08 35.1 29.3 5 5 3.8e-07 0.0002 21.4 0.9 6 38 265 304 264 305 0.93 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 1 7 0.07 37 4.0 0.1 2 12 100 110 99 120 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 2 7 0.0066 3.5 7.3 0.1 3 21 129 148 127 155 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 3 7 0.0021 1.1 8.9 0.1 3 18 181 197 179 200 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 4 7 0.011 5.6 6.6 0.1 3 15 209 221 207 224 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 5 7 0.48 2.5e+02 1.4 0.1 3 21 237 256 235 256 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 6 7 0.0041 2.2 8.0 0.0 3 21 265 284 264 284 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-202 - 329 6.7e-08 32.0 20.0 7 7 0.029 15 5.3 0.1 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 1 7 0.02 11 6.2 0.7 1 12 100 111 100 111 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 2 7 0.0073 3.9 7.6 0.1 3 24 130 151 129 153 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 3 7 0.00022 0.11 12.5 1.1 2 25 181 204 181 206 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 4 7 0.048 26 5.0 1.2 2 12 209 219 209 234 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 5 7 0.57 3e+02 1.6 0.3 2 21 237 256 237 260 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 6 7 0.0054 2.9 8.0 0.1 2 22 265 285 265 289 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-202 - 329 7.3e-07 29.0 38.0 7 7 0.00051 0.27 11.3 1.0 2 24 293 315 293 318 0.92 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 ZNF275-202 - 329 7.9e-07 29.3 16.1 1 4 0.012 6.5 7.1 0.0 36 91 101 155 68 162 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-202 - 329 7.9e-07 29.3 16.1 2 4 0.0025 1.3 9.3 0.1 65 91 179 205 168 208 0.88 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-202 - 329 7.9e-07 29.3 16.1 3 4 3.8e-05 0.02 15.2 0.5 34 90 235 288 229 296 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-202 - 329 7.9e-07 29.3 16.1 4 4 0.0084 4.4 7.7 0.1 41 88 268 314 260 320 0.84 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 1 11 0.045 30 5.3 0.1 15 24 48 57 35 58 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 2 11 4.4e-06 0.0029 18.0 0.0 2 24 63 85 63 86 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 3 11 2.7e-05 0.018 15.4 0.3 13 26 126 139 118 139 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 4 11 5.8e-09 3.9e-06 27.0 0.2 1 25 142 166 142 167 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 5 11 3.6e-08 2.4e-05 24.6 2.4 1 24 170 193 170 194 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 6 11 2.4e-07 0.00016 22.0 0.7 2 24 199 221 198 222 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 7 11 6.5e-07 0.00043 20.6 0.4 2 25 227 250 226 251 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 8 11 1e-10 6.9e-08 32.6 0.4 2 25 255 278 254 279 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 9 11 6.7e-08 4.4e-05 23.7 0.1 2 24 283 305 282 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 10 11 7.6e-10 5e-07 29.9 0.4 2 25 311 334 310 335 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-204 - 376 1.9e-58 192.4 69.0 11 11 9.3e-07 0.00062 20.1 0.6 1 26 338 363 338 363 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 1 11 4.6e-05 0.03 14.8 0.2 1 23 48 70 48 70 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 2 11 1.7e-05 0.011 16.1 0.1 2 23 77 98 76 98 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 3 11 1.4e-07 9.4e-05 22.7 0.3 1 23 128 150 128 150 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 4 11 1.9e-07 0.00012 22.3 2.6 1 23 156 178 156 178 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 5 11 0.00074 0.49 10.9 0.7 1 23 184 206 184 206 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 6 11 2e-06 0.0013 19.0 0.0 1 23 212 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 7 11 6.9e-08 4.6e-05 23.7 2.4 3 23 242 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 8 11 1.3e-07 8.8e-05 22.8 0.1 1 23 268 290 268 290 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 9 11 2e-08 1.3e-05 25.3 0.0 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 10 11 5.4e-09 3.6e-06 27.1 0.9 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-204 - 376 7.4e-57 186.8 63.9 11 11 1.4e-06 0.00093 19.5 4.0 2 22 353 373 352 375 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 1 11 0.0002 0.14 13.1 0.4 1 23 48 70 48 71 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 2 11 0.00015 0.1 13.5 0.1 2 23 77 98 76 99 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 3 11 1.4e-06 0.00093 19.8 0.4 1 23 128 150 128 151 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 4 11 7.1e-05 0.047 14.5 2.1 3 23 158 178 156 179 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 5 11 1.1e-05 0.0075 17.0 0.6 1 23 184 206 184 207 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 6 11 0.00017 0.11 13.3 0.1 3 23 214 234 212 235 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 7 11 7.8e-06 0.0052 17.5 1.6 2 23 241 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 8 11 2.5e-05 0.017 15.9 0.2 1 23 268 290 268 291 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 9 11 2.1e-05 0.014 16.2 0.1 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 10 11 2.2e-06 0.0014 19.2 0.6 1 23 324 346 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-204 - 376 5.5e-42 138.8 65.8 11 11 2.7e-06 0.0018 19.0 4.4 2 24 353 375 352 375 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 1 11 5.6 3.7e+03 -1.6 0.2 2 7 48 53 47 58 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 2 11 0.0022 1.5 9.2 0.0 2 24 76 98 75 99 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 3 11 9.2e-05 0.061 13.6 0.0 2 22 128 148 127 148 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 4 11 0.057 38 4.7 0.1 2 12 156 166 155 171 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 5 11 0.00025 0.17 12.3 0.1 2 22 184 204 183 204 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 6 11 0.028 19 5.7 0.0 2 22 212 232 211 232 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 7 11 0.0034 2.3 8.6 0.0 4 21 242 259 239 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 8 11 0.91 6.1e+02 0.9 0.0 2 20 268 286 267 287 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 9 11 0.028 18 5.7 0.0 2 21 296 315 295 316 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 10 11 0.8 5.3e+02 1.1 0.0 2 21 324 343 323 344 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-204 - 376 2.9e-21 75.2 13.1 11 11 0.00095 0.63 10.4 0.2 4 21 354 371 353 374 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 1 11 0.019 12 6.0 0.7 1 12 47 58 47 58 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 2 11 0.0069 4.6 7.4 0.1 3 24 77 98 76 100 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 3 11 0.0002 0.14 12.2 1.1 2 25 128 151 128 153 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 4 11 0.045 30 4.8 1.2 2 12 156 166 156 181 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 5 11 0.54 3.6e+02 1.3 0.3 2 21 184 203 184 207 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 6 11 0.0051 3.4 7.8 0.1 2 22 212 232 212 236 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 7 11 0.00048 0.32 11.0 1.0 2 24 240 262 240 265 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 8 11 0.042 28 4.9 0.3 2 20 268 286 268 293 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 9 11 0.0048 3.2 7.9 0.1 2 24 296 318 296 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 10 11 0.00022 0.15 12.1 0.6 2 24 324 346 324 348 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-204 - 376 6.3e-13 48.4 64.7 11 11 9e-05 0.059 13.4 2.2 3 25 353 375 353 376 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 1 9 0.0014 0.9 9.7 2.0 6 34 48 83 46 88 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 2 9 0.039 26 5.0 0.3 7 22 77 92 73 98 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 3 9 0.0028 1.8 8.7 7.1 6 34 128 163 127 166 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 4 9 0.0015 0.98 9.6 3.1 6 34 156 191 155 197 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 5 9 3.7e-07 0.00024 21.1 0.9 6 38 212 251 211 252 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 6 9 0.00063 0.42 10.8 2.1 6 36 268 305 267 307 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 7 9 0.00027 0.18 12.0 3.0 6 38 296 335 294 336 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 8 9 0.001 0.68 10.1 5.3 6 38 324 363 322 365 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-204 - 376 3.7e-12 46.2 51.1 9 9 0.022 15 5.8 0.8 7 21 353 367 349 375 0.75 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 1 11 0.065 43 3.8 0.1 2 12 47 57 46 67 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 2 11 0.0062 4.1 7.1 0.1 3 21 76 95 74 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 3 11 0.002 1.3 8.7 0.1 3 18 128 144 126 147 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 4 11 0.0099 6.5 6.4 0.1 3 15 156 168 154 171 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 5 11 0.44 2.9e+02 1.1 0.1 3 21 184 203 182 203 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 6 11 0.0039 2.6 7.7 0.0 3 21 212 231 211 231 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 7 11 0.027 18 5.0 0.1 3 20 240 258 238 259 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 8 11 0.0015 1 9.0 0.0 3 20 268 286 266 287 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 9 11 0.052 34 4.1 0.0 3 13 296 306 294 315 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 10 11 0.012 8.1 6.1 0.1 3 12 324 333 322 339 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-204 - 376 1.8e-11 43.4 37.4 11 11 0.066 44 3.8 1.0 5 21 354 371 352 371 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 1 6 0.015 9.8 6.5 0.2 36 91 48 102 23 109 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 2 6 0.0022 1.4 9.2 0.1 65 91 126 152 109 155 0.88 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 3 6 0.0013 0.87 9.9 3.9 32 88 124 177 120 185 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 4 6 3.8e-05 0.025 14.9 0.6 34 90 182 235 176 243 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 5 6 0.0012 0.79 10.1 0.5 41 90 243 291 237 296 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-204 - 376 1.6e-08 34.8 30.5 6 6 0.0064 4.3 7.7 0.7 41 90 299 347 290 356 0.81 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 1 6 0.013 8.8 7.2 0.1 37 77 47 87 42 95 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 2 6 0.0017 1.1 10.0 1.2 34 77 124 167 117 174 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 3 6 0.021 14 6.5 0.9 33 74 179 220 171 254 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 4 6 0.001 0.66 10.8 0.3 36 78 238 280 229 283 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 5 6 0.0022 1.5 9.7 1.1 31 73 261 303 241 311 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-204 - 376 7.7e-07 29.8 27.2 6 6 0.011 7.4 7.4 3.5 37 76 323 362 284 367 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 1 11 0.039 35 5.1 0.1 15 24 101 110 89 111 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 2 11 3.8e-06 0.0034 17.7 0.0 2 24 116 138 116 139 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 3 11 2.4e-05 0.021 15.2 0.3 13 26 179 192 171 192 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 4 11 5.1e-09 4.6e-06 26.8 0.2 1 25 195 219 195 220 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 5 11 3.1e-08 2.8e-05 24.3 2.4 1 24 223 246 223 247 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 6 11 2.1e-07 0.00019 21.7 0.7 2 24 252 274 251 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 7 11 5.7e-07 0.00051 20.4 0.4 2 25 280 303 279 304 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 8 11 9e-11 8.1e-08 32.4 0.4 2 25 308 331 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 9 11 5.8e-08 5.2e-05 23.5 0.1 2 24 336 358 335 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 10 11 6.6e-10 5.9e-07 29.6 0.4 2 25 364 387 363 388 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF275-205 - 429 8.1e-58 190.4 68.5 11 11 8.1e-07 0.00073 19.9 0.6 1 26 391 416 391 416 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 1 11 4e-05 0.036 14.5 0.2 1 23 101 123 101 123 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 2 11 1.5e-05 0.013 15.9 0.1 2 23 130 151 129 151 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 3 11 1.2e-07 0.00011 22.4 0.3 1 23 181 203 181 203 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 4 11 1.6e-07 0.00015 22.1 2.6 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 5 11 0.00065 0.58 10.7 0.7 1 23 237 259 237 259 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 6 11 1.8e-06 0.0016 18.8 0.0 1 23 265 287 265 287 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 7 11 6e-08 5.4e-05 23.4 2.4 3 23 295 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 8 11 1.2e-07 0.0001 22.5 0.1 1 23 321 343 321 343 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 9 11 1.8e-08 1.6e-05 25.1 0.0 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 10 11 4.7e-09 4.2e-06 26.9 0.9 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF275-205 - 429 3.6e-56 184.6 63.9 11 11 1.2e-06 0.0011 19.3 4.0 2 22 406 426 405 428 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 1 11 0.00018 0.16 12.9 0.4 1 23 101 123 101 124 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 2 11 0.00013 0.12 13.3 0.1 2 23 130 151 129 152 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 3 11 1.2e-06 0.0011 19.6 0.4 1 23 181 203 181 204 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 4 11 6.2e-05 0.056 14.3 2.1 3 23 211 231 209 232 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 5 11 9.9e-06 0.0089 16.8 0.6 1 23 237 259 237 260 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 6 11 0.00015 0.13 13.1 0.1 3 23 267 287 265 288 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 7 11 6.8e-06 0.0061 17.3 1.6 2 23 294 315 293 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 8 11 2.2e-05 0.02 15.7 0.2 1 23 321 343 321 344 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 9 11 1.8e-05 0.017 16.0 0.1 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 10 11 1.9e-06 0.0017 19.0 0.6 1 23 377 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF275-205 - 429 3.1e-41 136.5 65.8 11 11 2.3e-06 0.0021 18.7 4.4 2 24 406 428 405 428 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 1 11 5.4 4.9e+03 -2.0 0.2 2 7 101 106 100 110 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 2 11 0.0019 1.7 9.0 0.0 2 24 129 151 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 3 11 8e-05 0.072 13.4 0.0 2 22 181 201 180 201 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 4 11 0.051 45 4.5 0.1 2 12 209 219 208 223 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 5 11 0.00022 0.19 12.0 0.1 2 22 237 257 236 257 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 6 11 0.025 22 5.5 0.0 2 22 265 285 264 285 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 7 11 0.003 2.7 8.4 0.0 4 21 295 312 292 313 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 8 11 0.79 7.1e+02 0.7 0.0 2 20 321 339 320 340 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 9 11 0.024 22 5.5 0.0 2 21 349 368 348 369 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 10 11 0.7 6.2e+02 0.9 0.0 2 21 377 396 376 397 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF275-205 - 429 2.9e-20 72.0 14.1 11 11 0.00083 0.74 10.2 0.2 4 21 407 424 406 427 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 1 11 0.016 14 5.8 0.7 1 12 100 111 100 111 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 2 11 0.006 5.4 7.1 0.1 3 24 130 151 129 153 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 3 11 0.00018 0.16 12.0 1.1 2 25 181 204 181 206 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 4 11 0.039 35 4.6 1.2 2 12 209 219 209 234 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 5 11 0.46 4.2e+02 1.1 0.3 2 21 237 256 237 260 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 6 11 0.0044 3.9 7.6 0.1 2 22 265 285 265 289 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 7 11 0.00042 0.38 10.8 1.0 2 24 293 315 293 318 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 8 11 0.037 33 4.6 0.3 2 20 321 339 321 346 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 9 11 0.0042 3.7 7.6 0.1 2 24 349 371 349 373 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 10 11 0.00019 0.17 11.9 0.6 2 24 377 399 377 401 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF275-205 - 429 3.3e-12 46.1 64.7 11 11 7.8e-05 0.07 13.2 2.2 3 25 406 428 406 429 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 1 9 0.0013 1.2 9.3 2.1 6 34 101 136 99 141 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 2 9 0.032 28 4.9 0.2 7 22 130 145 128 151 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 3 9 0.0021 1.9 8.7 6.9 6 34 181 216 180 219 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 4 9 0.001 0.92 9.7 2.8 6 34 209 244 208 250 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 5 9 3.2e-07 0.00029 20.9 0.9 6 38 265 304 264 305 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 6 9 0.00044 0.39 10.9 1.8 6 36 321 358 320 360 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 7 9 0.00022 0.2 11.8 2.9 6 38 349 388 347 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 8 9 0.00085 0.76 9.9 5.2 6 38 377 416 375 418 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF275-205 - 429 6.2e-12 45.4 50.1 9 9 0.019 17 5.6 0.8 7 21 406 420 404 428 0.73 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 1 11 0.057 51 3.6 0.1 2 12 100 110 99 120 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 2 11 0.0054 4.8 6.9 0.1 3 21 129 148 127 155 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 3 11 0.0017 1.5 8.5 0.1 3 18 181 197 179 200 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 4 11 0.0085 7.6 6.2 0.1 3 15 209 221 207 224 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 5 11 0.38 3.4e+02 0.9 0.1 3 21 237 256 235 256 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 6 11 0.0033 3 7.5 0.0 3 21 265 284 264 284 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 7 11 0.023 21 4.8 0.1 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 8 11 0.0013 1.2 8.8 0.0 3 20 321 339 319 340 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 9 11 0.045 40 3.9 0.0 3 13 349 359 347 368 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 10 11 0.01 9.4 5.9 0.1 3 12 377 386 375 392 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF275-205 - 429 9.1e-11 41.2 37.4 11 11 0.058 52 3.6 1.0 5 21 407 424 405 424 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 1 6 0.013 12 6.3 0.2 36 91 101 155 75 162 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 2 6 0.00086 0.77 10.1 3.7 31 88 176 230 169 236 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 3 6 3e-05 0.027 14.7 0.5 34 90 235 288 228 296 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 4 6 0.00089 0.8 10.0 0.6 41 90 296 344 284 350 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 5 6 0.00034 0.3 11.4 0.6 36 88 321 370 298 376 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF275-205 - 429 2.9e-08 33.9 29.9 6 6 0.0063 5.6 7.3 0.8 41 90 352 400 344 410 0.81 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 1 6 0.012 11 6.9 0.1 37 77 100 140 95 148 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 2 6 0.0017 1.5 9.6 1.3 34 77 177 220 171 224 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 3 6 0.02 18 6.2 1.0 33 74 232 273 224 307 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 4 6 0.00091 0.82 10.5 0.4 36 78 291 333 282 336 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 5 6 0.0035 3.1 8.6 1.6 31 73 314 356 295 363 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF275-205 - 429 2.3e-06 28.3 27.4 6 6 0.0081 7.3 7.4 3.3 37 76 376 415 335 421 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 ZNF277-201 - 450 2e-47 159.7 24.3 1 3 7.8e-07 0.001 19.4 0.1 2 57 60 117 58 125 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF277-201 - 450 2e-47 159.7 24.3 2 3 1.9e-25 2.4e-22 79.2 6.5 2 97 175 266 172 269 0.95 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF277-201 - 450 2e-47 159.7 24.3 3 3 2.4e-22 3.1e-19 69.2 5.8 2 99 304 404 301 406 0.90 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 24 ZNF277-201 - 450 5.6e-12 45.4 21.1 1 5 0.0045 5.8 8.0 0.1 2 24 59 83 58 83 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-201 - 450 5.6e-12 45.4 21.1 2 5 0.0011 1.5 9.9 0.1 3 24 175 197 174 197 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-201 - 450 5.6e-12 45.4 21.1 3 5 9.1e-07 0.0012 19.5 0.6 2 22 225 245 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-201 - 450 5.6e-12 45.4 21.1 4 5 0.0089 11 7.1 0.1 3 24 304 325 303 325 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-201 - 450 5.6e-12 45.4 21.1 5 5 0.00027 0.35 11.8 1.8 2 21 358 377 356 379 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 ZNF277-202 - 372 2e-42 143.7 21.5 1 3 1.7 2.3e+03 -1.0 0.0 19 56 1 38 1 46 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF277-202 - 372 2e-42 143.7 21.5 2 3 1.3e-25 1.7e-22 79.6 6.5 2 97 97 188 94 191 0.95 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF277-202 - 372 2e-42 143.7 21.5 3 3 1.6e-22 2.2e-19 69.7 5.8 2 99 226 326 223 328 0.90 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 24 ZNF277-202 - 372 8.7e-11 41.7 16.5 1 4 0.00083 1.1 10.2 0.1 3 24 97 119 96 119 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-202 - 372 8.7e-11 41.7 16.5 2 4 6.6e-07 0.00092 19.9 0.6 2 22 147 167 146 169 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-202 - 372 8.7e-11 41.7 16.5 3 4 0.0065 9 7.4 0.1 3 24 226 247 225 247 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-202 - 372 8.7e-11 41.7 16.5 4 4 0.0002 0.28 12.1 1.8 2 21 280 299 278 301 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 ZNF277-206 - 290 1.8e-28 98.8 10.3 1 2 3.1e-07 0.0005 20.3 0.1 2 57 60 117 58 125 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF277-206 - 290 1.8e-28 98.8 10.3 2 2 6.8e-26 1.1e-22 80.2 6.2 2 97 175 266 172 269 0.95 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 24 ZNF277-206 - 290 3.2e-09 36.8 7.8 1 3 0.002 3.3 8.8 0.1 2 24 59 83 58 83 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-206 - 290 3.2e-09 36.8 7.8 2 3 0.00051 0.83 10.7 0.1 3 24 175 197 174 197 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF277-206 - 290 3.2e-09 36.8 7.8 3 3 4.1e-07 0.00066 20.3 0.6 2 22 225 245 224 247 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280B-201 - 543 1e-67 227.9 16.0 1 1 8.9e-71 2.3e-67 226.7 16.0 1 184 45 225 45 226 0.99 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280B-202 - 543 1e-67 227.9 16.0 1 1 8.9e-71 2.3e-67 226.7 16.0 1 184 45 225 45 226 0.99 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280B-203 - 543 1e-67 227.9 16.0 1 1 8.9e-71 2.3e-67 226.7 16.0 1 184 45 225 45 226 0.99 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 1 7 3.6 3.4e+03 -1.1 0.1 2 10 113 121 112 122 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 2 7 0.0011 1 9.9 0.1 2 23 158 180 157 180 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 3 7 1.4e-07 0.00013 22.2 1.7 2 23 232 253 232 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 4 7 2.3e-05 0.021 15.2 2.0 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 5 7 1.3e-07 0.00013 22.3 3.6 3 23 388 408 387 408 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 6 7 8.8e-06 0.0083 16.5 4.0 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-201 - 475 1.2e-18 66.5 53.1 7 7 0.00066 0.62 10.6 2.1 1 23 445 468 445 468 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 1 8 6.3 5.9e+03 -2.0 0.1 17 25 159 167 154 167 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 2 8 0.11 1.1e+02 3.5 0.3 16 23 232 239 228 242 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 3 8 7.4e-11 6.9e-08 32.6 0.6 1 24 245 268 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 4 8 0.05 47 4.7 0.2 2 11 274 283 273 290 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 5 8 0.044 41 4.8 1.0 17 26 388 397 387 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 6 8 1.1e-10 1e-07 32.0 1.3 1 24 400 423 400 425 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 7 8 6.9e-05 0.065 13.7 3.4 2 21 429 451 428 454 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-201 - 475 2.9e-17 62.2 47.9 8 8 1.3 1.2e+03 0.2 0.0 2 10 460 469 459 474 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 1 7 6 5.7e+03 -1.3 0.1 2 11 113 122 112 134 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 2 7 0.0029 2.7 9.1 0.3 2 24 158 180 157 180 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 3 7 2.1e-06 0.0019 18.8 1.0 2 23 232 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 4 7 0.00033 0.31 12.0 1.9 1 23 259 281 259 282 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 5 7 4.3e-05 0.041 14.7 2.7 3 23 388 408 387 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 6 7 0.0006 0.56 11.2 2.1 1 23 414 436 414 437 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-201 - 475 2e-13 49.9 48.9 7 7 0.0001 0.098 13.6 2.3 1 24 445 468 445 468 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 1 7 3.8 3.2e+03 -1.1 0.1 2 10 89 97 88 98 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 2 7 0.0011 0.97 10.0 0.1 2 23 134 156 133 156 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 3 7 1.5e-07 0.00013 22.3 1.7 2 23 208 229 208 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 4 7 2.3e-05 0.02 15.3 2.0 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 5 7 1.4e-07 0.00012 22.3 3.6 3 23 364 384 363 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 6 7 9.1e-06 0.0078 16.6 4.0 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF296-202 - 451 7.7e-19 67.0 53.1 7 7 0.00068 0.58 10.7 2.1 1 23 421 444 421 444 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 1 8 6.5 5.6e+03 -1.9 0.1 17 25 135 143 130 143 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 2 8 0.12 99 3.6 0.3 16 23 208 215 204 218 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 3 8 7.6e-11 6.5e-08 32.7 0.6 1 24 221 244 221 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 4 8 0.052 44 4.7 0.2 2 11 250 259 249 266 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 5 8 0.046 39 4.9 1.0 17 26 364 373 363 373 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 6 8 1.1e-10 9.6e-08 32.1 1.3 1 25 376 400 376 401 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 7 8 7.1e-05 0.061 13.8 3.4 2 21 405 427 404 430 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF296-202 - 451 1.8e-17 62.8 47.9 8 8 1.4 1.2e+03 0.2 0.0 2 10 436 445 435 450 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 1 7 6.3 5.3e+03 -1.2 0.1 2 11 89 98 88 110 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 2 7 0.003 2.5 9.1 0.3 2 24 134 156 133 156 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 3 7 2.1e-06 0.0018 18.9 1.0 2 23 208 229 207 230 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 4 7 0.00035 0.3 12.1 1.9 1 23 235 257 235 258 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 5 7 4.5e-05 0.039 14.8 2.7 3 23 364 384 363 385 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 6 7 0.00062 0.53 11.3 2.1 1 23 390 412 390 413 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF296-202 - 451 1.3e-13 50.5 48.9 7 7 0.00011 0.092 13.6 2.3 1 24 421 444 421 444 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF318-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4772 PF15997.5 117 ZNF395-201 - 513 1.8e-30 105.9 0.0 1 1 4.4e-34 3.9e-30 104.8 0.0 1 116 7 108 7 109 0.93 Domain of unknown function (DUF4772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-207.fa # Current dir: 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/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4772 PF15997.5 117 ZNF395-210 - 513 1.8e-30 105.9 0.0 1 1 4.4e-34 3.9e-30 104.8 0.0 1 116 7 108 7 109 0.93 Domain of unknown function (DUF4772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF396-201 - 333 1.5e-42 143.3 1.9 1 1 1.9e-45 2.9e-42 142.4 1.9 1 88 48 135 48 137 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF396-201 - 333 2.1e-10 40.4 1.8 1 2 2.6e-08 3.9e-05 23.9 0.1 2 23 252 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF396-201 - 333 2.1e-10 40.4 1.8 2 2 1.5e-05 0.023 15.2 0.1 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF396-201 - 333 4.3e-07 30.1 0.1 1 4 5.5 8.2e+03 -2.4 0.3 8 13 114 119 112 119 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-201 - 333 4.3e-07 30.1 0.1 2 4 0.04 59 4.3 0.2 13 25 249 261 244 262 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-201 - 333 4.3e-07 30.1 0.1 3 4 2.9e-10 4.3e-07 30.1 0.1 2 25 266 289 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-201 - 333 4.3e-07 30.1 0.1 4 4 1 1.5e+03 -0.1 3.2 3 13 295 305 294 327 0.59 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF396-201 - 333 1.2e-06 28.8 2.3 1 2 4.6e-05 0.069 14.0 0.2 2 23 252 273 251 274 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF396-201 - 333 1.2e-06 28.8 2.3 2 2 5.8e-05 0.086 13.7 0.1 1 23 279 301 279 302 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF396-203 - 161 3.2e-43 145.5 1.9 1 1 3.2e-47 5.7e-43 144.7 1.9 1 88 48 135 48 137 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF396-204 - 210 6.3e-43 144.5 1.9 1 1 6.2e-47 1.1e-42 143.7 1.9 1 88 48 135 48 137 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF396-206 - 335 1.5e-42 143.3 1.9 1 1 3.6e-45 2.9e-42 142.4 1.9 1 88 48 135 48 137 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF396-206 - 335 5.3e-18 64.4 13.8 1 3 4.8e-08 3.9e-05 23.9 0.1 2 23 252 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF396-206 - 335 5.3e-18 64.4 13.8 2 3 2.8e-05 0.023 15.2 0.1 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF396-206 - 335 5.3e-18 64.4 13.8 3 3 4.5e-10 3.7e-07 30.2 4.6 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF396-206 - 335 1.1e-14 54.0 4.8 1 4 0.073 60 4.3 0.2 13 25 249 261 244 262 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-206 - 335 1.1e-14 54.0 4.8 2 4 5.4e-10 4.4e-07 30.0 0.1 2 25 266 289 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-206 - 335 1.1e-14 54.0 4.8 3 4 7.9e-11 6.5e-08 32.7 1.6 3 25 295 317 294 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF396-206 - 335 1.1e-14 54.0 4.8 4 4 0.71 5.8e+02 1.2 1.2 1 13 321 333 321 334 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF396-206 - 335 9.3e-11 41.6 12.4 1 3 8.6e-05 0.07 14.0 0.2 2 23 252 273 251 274 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF396-206 - 335 9.3e-11 41.6 12.4 2 3 0.00011 0.087 13.7 0.1 1 23 279 301 279 302 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF396-206 - 335 9.3e-11 41.6 12.4 3 3 2e-06 0.0016 19.1 2.6 1 23 307 329 307 330 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF396-206 - 335 8.7e-06 25.6 13.5 1 3 0.0032 2.6 8.1 0.4 3 24 252 273 252 276 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF396-206 - 335 8.7e-06 25.6 13.5 2 3 0.00021 0.17 11.9 0.1 2 24 279 301 279 304 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF396-206 - 335 8.7e-06 25.6 13.5 3 3 0.0005 0.41 10.7 3.5 2 24 307 329 307 332 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_8 PF15909.5 98 ZNF414-201 - 312 3.6e-58 193.9 12.0 1 1 1.9e-61 5.6e-58 193.3 12.0 1 98 110 207 110 207 1.00 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_8 PF15909.5 98 ZNF414-202 - 390 4.7e-58 193.5 12.0 1 1 3.8e-61 8.6e-58 192.7 12.0 1 98 110 207 110 207 1.00 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 1 15 0.79 5.5e+02 1.3 0.1 17 25 114 122 109 123 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 2 15 3.2e-11 2.2e-08 34.1 0.2 1 25 126 150 126 151 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 3 15 0.00043 0.3 11.6 0.1 4 24 157 201 155 203 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 4 15 8.1e-11 5.6e-08 32.9 0.1 1 25 206 230 206 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 5 15 0.17 1.2e+02 3.4 0.5 4 14 237 247 235 251 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 6 15 0.05 34 5.1 0.3 12 25 272 285 267 285 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 7 15 9e-08 6.2e-05 23.2 0.1 2 25 290 313 289 314 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 8 15 3.6e-12 2.5e-09 37.1 0.1 1 25 317 341 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 9 15 2.2e-09 1.5e-06 28.3 1.0 3 25 347 369 345 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 10 15 4.3e-05 0.03 14.8 0.5 11 25 447 461 446 462 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 11 15 5.1e-11 3.5e-08 33.5 0.5 1 25 465 489 465 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 12 15 0.045 31 5.2 0.1 3 13 495 505 493 514 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 13 15 0.037 26 5.5 0.3 13 24 541 552 534 554 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 14 15 3e-11 2.1e-08 34.2 0.4 1 25 557 581 557 582 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-201 - 618 6.5e-68 222.4 76.3 15 15 5.3 3.6e+03 -1.3 0.1 4 15 588 599 587 599 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 1 12 6.1e-09 4.2e-06 26.9 0.5 2 23 113 134 113 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 2 12 5.2e-07 0.00036 20.8 0.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 3 12 1.5e-09 1e-06 28.9 0.5 3 23 194 214 192 214 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 4 12 3.5e-07 0.00024 21.4 0.2 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 5 12 6.1e-06 0.0042 17.5 2.3 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 6 12 9.2e-07 0.00063 20.0 0.1 3 23 305 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 7 12 8.3e-07 0.00057 20.2 0.1 1 23 331 353 331 353 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 8 12 3.1e-06 0.0021 18.4 1.8 1 23 359 381 359 381 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 9 12 1.2e-08 8.5e-06 26.0 3.3 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 10 12 8.3e-07 0.00057 20.2 0.1 1 23 479 501 479 501 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 11 12 1.1e-08 7.4e-06 26.1 1.6 1 23 543 565 543 565 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-201 - 618 4.8e-67 218.9 72.2 12 12 7.1e-06 0.0049 17.3 0.1 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 1 12 3.3e-05 0.023 15.5 0.5 3 23 114 134 113 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 2 12 0.00012 0.085 13.7 0.2 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 3 12 1e-05 0.0071 17.1 0.4 2 23 193 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 4 12 8.6e-05 0.06 14.2 0.2 1 23 220 242 220 243 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 5 12 2.6e-05 0.018 15.8 2.0 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 6 12 4e-05 0.028 15.3 0.1 1 23 303 325 303 326 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 7 12 1.9e-05 0.013 16.3 0.2 1 23 331 353 331 354 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 8 12 6.8e-06 0.0047 17.7 1.3 1 23 359 381 359 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 9 12 2.6e-05 0.018 15.8 2.7 1 23 451 473 451 474 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 10 12 2.3e-05 0.016 16.0 0.2 1 23 479 501 479 502 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 11 12 8.7e-06 0.006 17.3 1.4 1 23 543 565 543 566 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-201 - 618 6.4e-42 138.6 71.2 12 12 0.0036 2.5 9.2 0.1 1 23 571 593 571 594 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 1 12 0.01 7.1 7.1 0.2 4 24 114 134 113 134 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 2 12 0.00092 0.63 10.4 0.0 2 24 140 162 139 163 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 3 12 0.0092 6.4 7.2 0.2 4 24 194 214 193 214 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 4 12 0.00072 0.5 10.7 0.0 2 24 220 242 219 243 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 5 12 0.85 5.9e+02 0.9 0.3 2 23 275 296 274 298 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 6 12 0.0058 4 7.8 0.0 4 22 305 323 302 323 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 7 12 0.00015 0.1 12.9 0.0 4 24 333 353 330 354 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 8 12 0.0016 1.1 9.6 0.0 2 21 359 378 358 381 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 9 12 0.00091 0.63 10.4 0.0 2 20 451 469 450 470 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 10 12 0.00015 0.1 12.9 0.0 4 24 481 501 478 502 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 11 12 0.0026 1.8 9.0 0.0 2 24 543 565 542 565 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-201 - 618 1.5e-31 108.0 20.2 12 12 0.00061 0.42 11.0 0.0 2 24 571 593 570 594 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 1 12 0.00077 0.53 10.4 0.5 4 24 114 134 113 137 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 2 12 0.04 27 4.9 0.3 2 12 140 150 140 165 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 3 12 0.0011 0.75 9.9 0.5 3 24 193 214 192 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 4 12 0.033 23 5.2 1.1 2 26 220 244 220 245 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 5 12 0.0094 6.5 6.9 0.8 2 25 275 298 275 300 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 6 12 4.9e-06 0.0034 17.4 0.1 2 24 303 325 303 328 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 7 12 0.036 25 5.0 0.9 2 12 331 341 331 356 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 8 12 0.011 7.9 6.6 0.1 2 12 359 369 359 383 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 9 12 0.00089 0.61 10.1 1.6 2 22 451 471 451 475 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 10 12 0.024 16 5.6 1.5 2 25 479 502 479 504 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 11 12 0.00014 0.099 12.7 0.7 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-201 - 618 4.2e-15 55.3 73.7 12 12 0.017 11 6.1 0.2 2 11 571 580 571 581 0.92 C2H2-type zinc finger DZR PF12773.7 49 ZNF48-201 - 618 4.6e-10 39.4 31.9 1 5 5.4e-05 0.037 14.0 0.3 5 36 104 147 101 156 0.89 Double zinc ribbon DZR PF12773.7 49 ZNF48-201 - 618 4.6e-10 39.4 31.9 2 5 0.0033 2.3 8.3 0.2 11 36 190 227 182 236 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF48-201 - 618 4.6e-10 39.4 31.9 3 5 0.021 15 5.7 8.4 15 48 305 364 259 374 0.58 Double zinc ribbon DZR PF12773.7 49 ZNF48-201 - 618 4.6e-10 39.4 31.9 4 5 0.00031 0.21 11.6 0.3 12 39 450 490 441 495 0.84 Double zinc ribbon DZR PF12773.7 49 ZNF48-201 - 618 4.6e-10 39.4 31.9 5 5 0.0017 1.2 9.2 0.4 9 36 539 578 535 587 0.87 Double zinc ribbon XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 1 12 0.089 61 3.8 0.1 3 12 113 122 111 127 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 2 12 0.059 41 4.3 0.1 3 14 141 152 139 153 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 3 12 0.015 10 6.2 0.2 2 14 192 204 191 205 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 4 12 0.081 56 3.9 0.1 3 14 221 232 219 233 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 5 12 0.091 62 3.7 0.2 3 14 276 287 274 291 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 6 12 0.15 1.1e+02 3.0 0.1 4 12 305 313 302 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 7 12 0.0036 2.5 8.2 0.1 4 14 333 343 330 344 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 8 12 0.16 1.1e+02 3.0 0.1 3 14 360 371 358 377 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 9 12 0.023 16 5.7 0.1 3 14 452 463 450 469 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 10 12 0.0036 2.5 8.2 0.1 4 14 481 491 478 492 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 11 12 0.42 2.9e+02 1.6 0.1 3 14 544 555 542 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-201 - 618 2.6e-09 37.0 44.2 12 12 0.0011 0.74 9.9 0.2 3 14 572 583 570 584 0.93 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 1 12 0.098 67 3.2 0.1 4 13 113 122 111 131 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 2 12 1.5 1e+03 -0.6 0.0 3 15 140 152 138 159 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 3 12 0.035 24 4.6 0.1 4 20 193 210 191 211 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 4 12 0.46 3.2e+02 1.0 0.0 3 15 220 232 218 239 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 5 12 0.0011 0.77 9.4 0.2 3 21 275 294 273 294 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 6 12 0.4 2.7e+02 1.2 0.0 5 14 305 314 302 322 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 7 12 0.0019 1.3 8.6 0.0 3 16 331 345 329 350 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 8 12 0.038 26 4.5 0.1 4 15 360 371 358 378 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 9 12 0.043 30 4.3 0.3 3 14 451 462 449 470 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 10 12 0.0019 1.3 8.6 0.0 3 16 479 493 477 498 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 11 12 0.094 65 3.2 0.1 3 20 543 561 541 562 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-201 - 618 2.6e-09 36.5 36.2 12 12 0.024 16 5.2 0.1 3 15 571 583 569 590 0.75 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 1 6 0.0074 5.1 7.5 0.3 5 42 114 150 110 163 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 2 6 0.0078 5.4 7.4 0.3 5 42 194 230 192 243 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 3 6 0.0095 6.5 7.1 0.7 5 52 277 325 273 327 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 4 6 0.00031 0.21 11.9 1.0 3 42 331 369 329 383 0.70 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 5 6 5.6e-05 0.039 14.3 1.2 4 51 452 500 449 505 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-201 - 618 2.4e-08 34.2 34.3 6 6 0.0073 5 7.5 0.5 4 41 544 580 541 597 0.70 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 1 6 0.0092 6.3 7.6 0.1 33 74 107 148 101 155 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 2 6 0.0044 3 8.6 0.1 26 74 180 228 179 235 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 3 6 0.5 3.4e+02 2.1 0.3 37 75 274 312 268 318 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 4 6 0.0011 0.73 10.6 0.1 29 75 322 368 318 373 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 5 6 0.018 13 6.6 0.1 38 75 451 488 446 494 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-201 - 618 9.5e-08 32.7 20.2 6 6 0.01 7.2 7.4 0.1 39 74 544 579 537 585 0.90 zinc-ribbon family zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 1 6 0.0011 0.78 10.1 0.0 34 87 110 160 84 170 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 2 6 0.097 67 3.9 0.0 42 85 196 238 188 250 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 3 6 0.0018 1.2 9.4 0.3 36 90 275 326 252 334 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 4 6 1.5 1e+03 0.1 0.1 40 57 361 378 330 389 0.44 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 5 6 0.036 25 5.3 0.1 41 89 454 501 444 511 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-201 - 618 1.1e-07 32.1 12.6 6 6 0.018 13 6.2 0.1 42 85 547 589 535 594 0.82 C2H2-type zinc ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 1 11 0.55 3.8e+02 1.5 0.1 17 31 107 121 103 121 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 2 11 4 2.8e+03 -1.3 0.1 20 31 139 149 130 149 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 3 11 1.4 1e+03 0.1 0.1 19 31 190 201 182 201 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 4 11 1.4 9.8e+02 0.1 0.1 20 31 219 229 208 229 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 5 11 0.033 23 5.4 0.0 17 32 269 285 263 286 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 6 11 0.00094 0.65 10.3 0.0 12 31 322 340 320 342 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 7 11 0.013 8.8 6.7 0.1 14 31 352 368 345 368 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 8 11 0.0077 5.3 7.4 0.6 21 31 451 460 440 460 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 9 11 0.0019 1.3 9.3 0.1 21 31 477 488 467 490 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 10 11 0.042 29 5.0 0.5 10 31 530 552 529 552 0.88 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-201 - 618 6.3e-07 29.5 39.2 11 11 0.14 96 3.4 0.1 19 31 569 580 559 580 0.69 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 1 15 0.79 5.5e+02 1.3 0.1 17 25 114 122 109 123 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 2 15 3.2e-11 2.2e-08 34.1 0.2 1 25 126 150 126 151 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 3 15 0.00043 0.3 11.6 0.1 4 24 157 201 155 203 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 4 15 8.1e-11 5.6e-08 32.9 0.1 1 25 206 230 206 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 5 15 0.17 1.2e+02 3.4 0.5 4 14 237 247 235 251 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 6 15 0.05 34 5.1 0.3 12 25 272 285 267 285 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 7 15 9e-08 6.2e-05 23.2 0.1 2 25 290 313 289 314 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 8 15 3.6e-12 2.5e-09 37.1 0.1 1 25 317 341 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 9 15 2.2e-09 1.5e-06 28.3 1.0 3 25 347 369 345 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 10 15 4.3e-05 0.03 14.8 0.5 11 25 447 461 446 462 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 11 15 5.1e-11 3.5e-08 33.5 0.5 1 25 465 489 465 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 12 15 0.045 31 5.2 0.1 3 13 495 505 493 514 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 13 15 0.037 26 5.5 0.3 13 24 541 552 534 554 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 14 15 3e-11 2.1e-08 34.2 0.4 1 25 557 581 557 582 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-205 - 618 6.5e-68 222.4 76.3 15 15 5.3 3.6e+03 -1.3 0.1 4 15 588 599 587 599 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 1 12 6.1e-09 4.2e-06 26.9 0.5 2 23 113 134 113 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 2 12 5.2e-07 0.00036 20.8 0.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 3 12 1.5e-09 1e-06 28.9 0.5 3 23 194 214 192 214 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 4 12 3.5e-07 0.00024 21.4 0.2 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 5 12 6.1e-06 0.0042 17.5 2.3 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 6 12 9.2e-07 0.00063 20.0 0.1 3 23 305 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 7 12 8.3e-07 0.00057 20.2 0.1 1 23 331 353 331 353 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 8 12 3.1e-06 0.0021 18.4 1.8 1 23 359 381 359 381 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 9 12 1.2e-08 8.5e-06 26.0 3.3 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 10 12 8.3e-07 0.00057 20.2 0.1 1 23 479 501 479 501 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 11 12 1.1e-08 7.4e-06 26.1 1.6 1 23 543 565 543 565 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-205 - 618 4.8e-67 218.9 72.2 12 12 7.1e-06 0.0049 17.3 0.1 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 1 12 3.3e-05 0.023 15.5 0.5 3 23 114 134 113 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 2 12 0.00012 0.085 13.7 0.2 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 3 12 1e-05 0.0071 17.1 0.4 2 23 193 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 4 12 8.6e-05 0.06 14.2 0.2 1 23 220 242 220 243 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 5 12 2.6e-05 0.018 15.8 2.0 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 6 12 4e-05 0.028 15.3 0.1 1 23 303 325 303 326 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 7 12 1.9e-05 0.013 16.3 0.2 1 23 331 353 331 354 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 8 12 6.8e-06 0.0047 17.7 1.3 1 23 359 381 359 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 9 12 2.6e-05 0.018 15.8 2.7 1 23 451 473 451 474 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 10 12 2.3e-05 0.016 16.0 0.2 1 23 479 501 479 502 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 11 12 8.7e-06 0.006 17.3 1.4 1 23 543 565 543 566 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-205 - 618 6.4e-42 138.6 71.2 12 12 0.0036 2.5 9.2 0.1 1 23 571 593 571 594 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 1 12 0.01 7.1 7.1 0.2 4 24 114 134 113 134 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 2 12 0.00092 0.63 10.4 0.0 2 24 140 162 139 163 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 3 12 0.0092 6.4 7.2 0.2 4 24 194 214 193 214 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 4 12 0.00072 0.5 10.7 0.0 2 24 220 242 219 243 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 5 12 0.85 5.9e+02 0.9 0.3 2 23 275 296 274 298 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 6 12 0.0058 4 7.8 0.0 4 22 305 323 302 323 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 7 12 0.00015 0.1 12.9 0.0 4 24 333 353 330 354 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 8 12 0.0016 1.1 9.6 0.0 2 21 359 378 358 381 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 9 12 0.00091 0.63 10.4 0.0 2 20 451 469 450 470 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 10 12 0.00015 0.1 12.9 0.0 4 24 481 501 478 502 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 11 12 0.0026 1.8 9.0 0.0 2 24 543 565 542 565 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-205 - 618 1.5e-31 108.0 20.2 12 12 0.00061 0.42 11.0 0.0 2 24 571 593 570 594 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 1 12 0.00077 0.53 10.4 0.5 4 24 114 134 113 137 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 2 12 0.04 27 4.9 0.3 2 12 140 150 140 165 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 3 12 0.0011 0.75 9.9 0.5 3 24 193 214 192 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 4 12 0.033 23 5.2 1.1 2 26 220 244 220 245 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 5 12 0.0094 6.5 6.9 0.8 2 25 275 298 275 300 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 6 12 4.9e-06 0.0034 17.4 0.1 2 24 303 325 303 328 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 7 12 0.036 25 5.0 0.9 2 12 331 341 331 356 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 8 12 0.011 7.9 6.6 0.1 2 12 359 369 359 383 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 9 12 0.00089 0.61 10.1 1.6 2 22 451 471 451 475 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 10 12 0.024 16 5.6 1.5 2 25 479 502 479 504 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 11 12 0.00014 0.099 12.7 0.7 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-205 - 618 4.2e-15 55.3 73.7 12 12 0.017 11 6.1 0.2 2 11 571 580 571 581 0.92 C2H2-type zinc finger DZR PF12773.7 49 ZNF48-205 - 618 4.6e-10 39.4 31.9 1 5 5.4e-05 0.037 14.0 0.3 5 36 104 147 101 156 0.89 Double zinc ribbon DZR PF12773.7 49 ZNF48-205 - 618 4.6e-10 39.4 31.9 2 5 0.0033 2.3 8.3 0.2 11 36 190 227 182 236 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF48-205 - 618 4.6e-10 39.4 31.9 3 5 0.021 15 5.7 8.4 15 48 305 364 259 374 0.58 Double zinc ribbon DZR PF12773.7 49 ZNF48-205 - 618 4.6e-10 39.4 31.9 4 5 0.00031 0.21 11.6 0.3 12 39 450 490 441 495 0.84 Double zinc ribbon DZR PF12773.7 49 ZNF48-205 - 618 4.6e-10 39.4 31.9 5 5 0.0017 1.2 9.2 0.4 9 36 539 578 535 587 0.87 Double zinc ribbon XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 1 12 0.089 61 3.8 0.1 3 12 113 122 111 127 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 2 12 0.059 41 4.3 0.1 3 14 141 152 139 153 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 3 12 0.015 10 6.2 0.2 2 14 192 204 191 205 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 4 12 0.081 56 3.9 0.1 3 14 221 232 219 233 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 5 12 0.091 62 3.7 0.2 3 14 276 287 274 291 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 6 12 0.15 1.1e+02 3.0 0.1 4 12 305 313 302 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 7 12 0.0036 2.5 8.2 0.1 4 14 333 343 330 344 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 8 12 0.16 1.1e+02 3.0 0.1 3 14 360 371 358 377 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 9 12 0.023 16 5.7 0.1 3 14 452 463 450 469 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 10 12 0.0036 2.5 8.2 0.1 4 14 481 491 478 492 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 11 12 0.42 2.9e+02 1.6 0.1 3 14 544 555 542 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-205 - 618 2.6e-09 37.0 44.2 12 12 0.0011 0.74 9.9 0.2 3 14 572 583 570 584 0.93 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 1 12 0.098 67 3.2 0.1 4 13 113 122 111 131 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 2 12 1.5 1e+03 -0.6 0.0 3 15 140 152 138 159 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 3 12 0.035 24 4.6 0.1 4 20 193 210 191 211 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 4 12 0.46 3.2e+02 1.0 0.0 3 15 220 232 218 239 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 5 12 0.0011 0.77 9.4 0.2 3 21 275 294 273 294 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 6 12 0.4 2.7e+02 1.2 0.0 5 14 305 314 302 322 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 7 12 0.0019 1.3 8.6 0.0 3 16 331 345 329 350 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 8 12 0.038 26 4.5 0.1 4 15 360 371 358 378 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 9 12 0.043 30 4.3 0.3 3 14 451 462 449 470 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 10 12 0.0019 1.3 8.6 0.0 3 16 479 493 477 498 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 11 12 0.094 65 3.2 0.1 3 20 543 561 541 562 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-205 - 618 2.6e-09 36.5 36.2 12 12 0.024 16 5.2 0.1 3 15 571 583 569 590 0.75 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 1 6 0.0074 5.1 7.5 0.3 5 42 114 150 110 163 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 2 6 0.0078 5.4 7.4 0.3 5 42 194 230 192 243 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 3 6 0.0095 6.5 7.1 0.7 5 52 277 325 273 327 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 4 6 0.00031 0.21 11.9 1.0 3 42 331 369 329 383 0.70 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 5 6 5.6e-05 0.039 14.3 1.2 4 51 452 500 449 505 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-205 - 618 2.4e-08 34.2 34.3 6 6 0.0073 5 7.5 0.5 4 41 544 580 541 597 0.70 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 1 6 0.0092 6.3 7.6 0.1 33 74 107 148 101 155 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 2 6 0.0044 3 8.6 0.1 26 74 180 228 179 235 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 3 6 0.5 3.4e+02 2.1 0.3 37 75 274 312 268 318 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 4 6 0.0011 0.73 10.6 0.1 29 75 322 368 318 373 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 5 6 0.018 13 6.6 0.1 38 75 451 488 446 494 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-205 - 618 9.5e-08 32.7 20.2 6 6 0.01 7.2 7.4 0.1 39 74 544 579 537 585 0.90 zinc-ribbon family zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 1 6 0.0011 0.78 10.1 0.0 34 87 110 160 84 170 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 2 6 0.097 67 3.9 0.0 42 85 196 238 188 250 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 3 6 0.0018 1.2 9.4 0.3 36 90 275 326 252 334 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 4 6 1.5 1e+03 0.1 0.1 40 57 361 378 330 389 0.44 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 5 6 0.036 25 5.3 0.1 41 89 454 501 444 511 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF48-205 - 618 1.1e-07 32.1 12.6 6 6 0.018 13 6.2 0.1 42 85 547 589 535 594 0.82 C2H2-type zinc ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 1 11 0.55 3.8e+02 1.5 0.1 17 31 107 121 103 121 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 2 11 4 2.8e+03 -1.3 0.1 20 31 139 149 130 149 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 3 11 1.4 1e+03 0.1 0.1 19 31 190 201 182 201 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 4 11 1.4 9.8e+02 0.1 0.1 20 31 219 229 208 229 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 5 11 0.033 23 5.4 0.0 17 32 269 285 263 286 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 6 11 0.00094 0.65 10.3 0.0 12 31 322 340 320 342 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 7 11 0.013 8.8 6.7 0.1 14 31 352 368 345 368 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 8 11 0.0077 5.3 7.4 0.6 21 31 451 460 440 460 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 9 11 0.0019 1.3 9.3 0.1 21 31 477 488 467 490 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 10 11 0.042 29 5.0 0.5 10 31 530 552 529 552 0.88 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-205 - 618 6.3e-07 29.5 39.2 11 11 0.14 96 3.4 0.1 19 31 569 580 559 580 0.69 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 1 14 2.5e-11 1.7e-08 34.5 0.2 1 25 3 27 3 28 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 2 14 0.00032 0.22 12.0 0.1 4 24 34 78 32 80 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 3 14 6.2e-11 4.3e-08 33.2 0.1 1 25 83 107 83 108 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 4 14 0.13 90 3.8 0.5 4 14 114 124 112 128 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 5 14 0.039 27 5.4 0.3 12 25 149 162 144 162 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 6 14 6.9e-08 4.7e-05 23.6 0.1 2 25 167 190 166 191 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 7 14 2.8e-12 1.9e-09 37.5 0.1 1 25 194 218 194 219 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 8 14 1.7e-09 1.2e-06 28.7 1.0 3 25 224 246 222 246 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 9 14 3.3e-05 0.023 15.1 0.5 11 25 324 338 323 339 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 10 14 3.9e-11 2.7e-08 33.9 0.5 1 25 342 366 342 367 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 11 14 0.036 25 5.5 0.1 3 13 372 382 370 390 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 12 14 0.031 21 5.7 0.3 13 24 418 429 412 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 13 14 2.3e-11 1.6e-08 34.6 0.4 1 25 434 458 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF48-206 - 495 1.9e-69 227.2 73.3 14 14 4.1 2.8e+03 -1.0 0.1 4 15 465 476 464 476 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 1 12 0.062 43 4.8 0.3 14 23 2 11 1 11 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 2 12 4e-07 0.00028 21.2 0.2 1 23 17 39 17 39 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 3 12 1.1e-09 7.8e-07 29.2 0.5 3 23 71 91 69 91 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 4 12 2.7e-07 0.00018 21.7 0.2 1 23 97 119 97 119 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 5 12 4.7e-06 0.0032 17.8 2.3 1 23 152 174 152 174 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 6 12 7.1e-07 0.00049 20.4 0.1 3 23 182 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 7 12 6.4e-07 0.00044 20.6 0.1 1 23 208 230 208 230 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 8 12 2.4e-06 0.0016 18.8 1.8 1 23 236 258 236 258 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 9 12 9.4e-09 6.5e-06 26.3 3.3 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 10 12 6.4e-07 0.00044 20.6 0.1 1 23 356 378 356 378 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 11 12 8.3e-09 5.7e-06 26.5 1.6 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF48-206 - 495 1.9e-61 201.2 71.5 12 12 5.5e-06 0.0038 17.6 0.1 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 1 12 4.5 3.1e+03 -0.4 0.2 15 23 3 11 1 12 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 2 12 9.4e-05 0.065 14.1 0.2 1 23 17 39 17 40 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 3 12 7.9e-06 0.0055 17.5 0.4 2 23 70 91 69 92 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 4 12 6.6e-05 0.046 14.6 0.2 1 23 97 119 97 120 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 5 12 2e-05 0.014 16.2 2.0 1 23 152 174 152 175 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 6 12 3.1e-05 0.021 15.6 0.1 1 23 180 202 180 203 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 7 12 1.4e-05 0.0098 16.7 0.2 1 23 208 230 208 231 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 8 12 5.2e-06 0.0036 18.0 1.3 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 9 12 2e-05 0.014 16.2 2.7 1 23 328 350 328 351 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 10 12 1.8e-05 0.012 16.3 0.2 1 23 356 378 356 379 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 11 12 6.7e-06 0.0046 17.7 1.4 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF48-206 - 495 1.5e-38 128.1 69.7 12 12 0.0027 1.9 9.5 0.1 1 23 448 470 448 471 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 1 11 0.00071 0.49 10.8 0.0 2 24 17 39 16 40 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 2 11 0.0071 4.9 7.6 0.2 4 24 71 91 70 91 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 3 11 0.00056 0.38 11.1 0.0 2 24 97 119 96 120 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 4 11 0.66 4.5e+02 1.3 0.3 2 23 152 173 151 175 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 5 11 0.0045 3.1 8.2 0.0 4 22 182 200 179 200 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 6 11 0.00012 0.08 13.3 0.0 4 24 210 230 207 231 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 7 11 0.0012 0.84 10.0 0.0 2 21 236 255 235 258 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 8 11 0.00071 0.49 10.8 0.0 2 20 328 346 327 347 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 9 11 0.00012 0.08 13.3 0.0 4 24 358 378 355 379 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 10 11 0.002 1.4 9.3 0.0 2 24 420 442 419 442 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF48-206 - 495 3.2e-30 103.7 19.9 11 11 0.00047 0.32 11.3 0.0 2 24 448 470 447 471 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 1 11 0.031 21 5.2 0.3 2 12 17 27 17 42 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 2 11 0.00084 0.58 10.2 0.5 3 24 70 91 69 94 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 3 11 0.034 23 5.1 1.5 2 26 97 121 97 122 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 4 11 0.0073 5 7.2 0.8 2 25 152 175 152 177 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 5 11 3.8e-06 0.0026 17.7 0.1 2 24 180 202 180 205 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 6 11 0.032 22 5.2 1.0 2 12 208 218 208 233 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 7 11 0.0081 5.6 7.1 0.1 2 12 236 246 236 261 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 8 11 0.00069 0.48 10.5 1.6 2 22 328 348 328 352 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 9 11 0.021 14 5.8 1.7 2 25 356 379 356 381 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 10 11 0.00011 0.076 13.0 0.7 2 24 420 442 420 445 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF48-206 - 495 1.9e-14 53.2 68.1 11 11 0.013 9 6.4 0.2 2 11 448 457 448 458 0.92 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 1 11 0.046 32 4.7 0.1 3 14 18 29 16 30 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 2 11 0.012 8.1 6.6 0.2 2 14 69 81 68 82 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 3 11 0.063 43 4.3 0.1 3 14 98 109 96 110 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 4 11 0.071 49 4.1 0.2 3 14 153 164 151 168 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 5 11 0.12 80 3.4 0.1 4 12 182 190 179 196 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 6 11 0.0028 2 8.6 0.1 4 14 210 220 207 221 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 7 11 0.12 84 3.3 0.1 3 14 237 248 235 254 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 8 11 0.018 12 6.0 0.1 3 14 329 340 327 346 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 9 11 0.0028 2 8.6 0.1 4 14 358 368 355 369 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 10 11 0.33 2.2e+02 2.0 0.1 3 14 421 432 419 433 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF48-206 - 495 4.6e-10 39.4 40.0 11 11 0.00084 0.58 10.3 0.2 3 14 449 460 447 461 0.93 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 1 11 1.2 8.1e+02 -0.3 0.0 3 15 17 29 15 36 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 2 11 0.027 19 5.0 0.1 4 20 70 87 68 88 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 3 11 0.36 2.5e+02 1.4 0.0 3 15 97 109 95 116 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 4 11 0.00087 0.6 9.8 0.2 3 21 152 171 150 171 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 5 11 0.31 2.1e+02 1.6 0.0 5 14 182 191 179 199 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 6 11 0.0015 1 9.0 0.0 3 16 208 222 206 227 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 7 11 0.029 20 4.9 0.1 4 15 237 248 235 255 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 8 11 0.034 23 4.7 0.3 3 14 328 339 326 347 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 9 11 0.0015 1 9.0 0.0 3 16 356 370 354 375 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 10 11 0.073 51 3.6 0.1 3 20 420 438 418 439 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF48-206 - 495 5.2e-10 38.7 32.6 11 11 0.018 13 5.5 0.1 3 15 448 460 446 467 0.75 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 1 6 0.13 92 3.4 0.1 16 42 3 27 1 41 0.67 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 2 6 0.0058 4 7.8 0.3 5 42 71 107 69 120 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 3 6 0.0071 4.9 7.5 0.7 5 52 154 202 150 204 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 4 6 0.00023 0.16 12.3 1.0 3 42 208 246 206 260 0.70 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 5 6 4.2e-05 0.029 14.7 1.2 4 51 329 377 326 382 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF48-206 - 495 1.7e-08 34.6 31.7 6 6 0.0055 3.8 7.9 0.5 4 41 421 457 418 474 0.70 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 1 10 2.9 2e+03 -0.9 0.1 20 31 16 26 6 26 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 2 10 1.1 7.8e+02 0.5 0.1 19 31 67 78 59 78 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 3 10 1.1 7.6e+02 0.5 0.1 20 31 96 106 85 106 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 4 10 0.026 18 5.7 0.0 17 32 146 162 140 163 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 5 10 0.00073 0.5 10.7 0.0 12 31 199 217 197 219 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 6 10 0.0099 6.9 7.0 0.1 14 31 229 245 222 245 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 7 10 0.006 4.1 7.7 0.6 21 31 328 337 317 337 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 8 10 0.0015 1 9.7 0.1 21 31 354 365 344 367 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 9 10 0.032 22 5.4 0.5 10 31 407 429 406 429 0.88 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF48-206 - 495 3.9e-08 33.4 35.2 10 10 0.11 74 3.7 0.1 19 31 446 457 436 457 0.69 zinc-ribbon zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 1 6 0.023 16 6.4 0.1 33 78 12 81 5 83 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 2 6 0.0034 2.4 9.0 0.1 26 74 57 105 55 111 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 3 6 0.36 2.5e+02 2.5 0.4 37 75 151 189 142 198 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 4 6 0.0008 0.55 11.0 0.1 29 75 199 245 195 250 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 5 6 0.014 9.6 7.0 0.1 38 75 328 365 323 371 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF48-206 - 495 1.3e-06 29.1 19.3 6 6 0.0079 5.5 7.8 0.1 39 74 421 456 414 462 0.90 zinc-ribbon family Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 1 10 0.17 1.2e+02 3.0 0.1 6 15 17 26 16 39 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 2 10 0.026 18 5.5 1.9 8 34 71 104 70 106 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 3 10 0.25 1.7e+02 2.4 0.1 6 15 97 106 95 117 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 4 10 0.00032 0.22 11.6 1.3 6 38 152 191 151 192 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 5 10 0.00018 0.12 12.5 1.4 6 34 180 215 179 219 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 6 10 0.0012 0.8 9.9 3.1 6 34 208 243 207 246 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 7 10 0.0098 6.7 6.9 0.4 26 38 326 339 322 341 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 8 10 0.00013 0.088 12.9 2.7 7 34 329 363 328 367 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 9 10 0.13 92 3.3 5.0 8 34 422 455 419 457 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF48-206 - 495 9.3e-06 25.7 48.3 10 10 0.032 22 5.3 0.6 6 15 448 457 447 465 0.90 Zinc ribbon domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 1 7 7.4 5.1e+03 -2.2 0.0 26 38 12 24 4 43 0.70 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 2 7 0.072 50 4.3 0.2 2 38 68 104 67 120 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 3 7 2 1.4e+03 -0.4 0.0 25 37 146 158 136 169 0.79 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 4 7 0.0042 2.9 8.2 0.1 4 37 181 214 178 233 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 5 7 0.043 30 5.0 0.2 2 38 207 243 206 248 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 6 7 0.00059 0.41 11.0 0.1 2 37 327 362 326 377 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF48-206 - 495 1e-05 25.9 17.9 7 7 0.00065 0.45 10.9 0.1 2 39 419 456 418 476 0.75 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 1 11 0.00033 0.66 9.8 0.1 5 23 616 634 614 636 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 2 11 0.055 1.1e+02 2.7 0.2 4 23 753 772 751 774 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 3 11 4.3 8.5e+03 -3.4 0.1 6 11 812 817 809 818 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 4 11 0.0048 9.5 6.1 0.3 5 25 842 862 841 865 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 5 11 0.026 51 3.7 0.2 5 23 905 923 905 925 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 6 11 1.7 3.3e+03 -2.1 0.1 5 15 936 946 934 951 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 7 11 2.3e-05 0.045 13.5 8.4 7 29 1057 1079 1054 1079 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 8 11 0.0048 9.6 6.1 1.2 7 28 1087 1111 1085 1111 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 9 11 3.3 6.5e+03 -3.0 0.2 5 11 1174 1180 1174 1182 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 10 11 1.1e-19 2.2e-16 59.3 3.8 1 29 1199 1227 1199 1227 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-201 - 1301 2.2e-18 65.7 65.6 11 11 0.29 5.8e+02 0.4 0.1 6 25 1265 1284 1262 1286 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 1 15 0.012 24 5.7 0.2 1 20 616 635 616 637 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 2 15 0.011 22 5.7 3.6 2 23 645 668 644 668 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 3 15 0.0058 12 6.6 0.1 2 20 755 773 754 775 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 4 15 0.004 7.9 7.1 1.4 2 23 784 805 784 805 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 5 15 0.087 1.7e+02 2.9 4.1 1 20 811 829 811 835 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 6 15 5.1e-05 0.1 13.1 0.2 1 23 842 865 842 865 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 7 15 0.0002 0.4 11.2 1.0 1 23 870 893 870 893 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 8 15 9.9e-05 0.2 12.2 1.7 1 23 905 927 905 927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 9 15 0.00043 0.86 10.2 0.2 1 23 936 959 936 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 10 15 0.02 39 5.0 0.7 2 23 1026 1048 1025 1048 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 11 15 6.3e-05 0.13 12.8 8.2 1 23 1055 1078 1055 1078 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 12 15 0.00045 0.89 10.1 1.8 1 23 1085 1111 1085 1111 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 13 15 0.21 4.2e+02 1.7 1.0 1 20 1174 1193 1174 1196 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 14 15 0.00014 0.27 11.8 3.4 1 23 1203 1226 1203 1226 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-201 - 1301 5.3e-18 64.4 120.1 15 15 1.1e-06 0.0022 18.4 0.5 2 23 1265 1286 1265 1286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 1 15 0.0032 6.5 7.9 0.2 1 20 616 635 616 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 2 15 0.043 85 4.4 3.3 2 23 645 668 644 669 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 3 15 0.0025 5 8.2 0.1 2 21 755 774 754 776 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 4 15 0.067 1.3e+02 3.8 1.1 2 23 784 805 784 806 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 5 15 0.031 63 4.8 1.3 1 20 811 829 811 831 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 6 15 9.1e-05 0.18 12.7 0.4 1 24 842 865 842 865 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 7 15 0.0014 2.8 9.0 1.1 1 24 870 893 870 893 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 8 15 0.00015 0.3 12.1 0.8 1 23 905 927 905 928 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 9 15 0.00028 0.55 11.2 0.2 1 24 936 959 936 959 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 10 15 1.8 3.6e+03 -0.7 1.0 6 24 1030 1048 1025 1048 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 11 15 0.00092 1.8 9.6 6.3 1 19 1055 1073 1055 1078 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 12 15 0.0069 14 6.9 1.5 1 24 1085 1111 1085 1111 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 13 15 0.093 1.9e+02 3.4 1.1 1 20 1174 1191 1174 1196 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 14 15 0.00034 0.67 11.0 3.7 1 24 1203 1226 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-201 - 1301 4.9e-15 54.9 112.6 15 15 1.1e-06 0.0022 18.7 0.3 2 23 1265 1286 1264 1287 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 1 11 1.1 2.2e+03 -0.9 0.1 2 21 616 635 615 636 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 2 11 0.00058 1.1 9.6 0.4 2 21 754 773 753 775 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 3 11 8.5 1.7e+04 -3.7 2.2 4 27 785 808 784 808 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 4 11 3.7 7.3e+03 -2.6 0.2 2 12 811 821 810 824 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 5 11 7e-06 0.014 15.7 0.0 2 23 842 863 841 864 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 6 11 0.13 2.5e+02 2.1 0.2 2 14 870 882 870 882 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 7 11 2.9 5.8e+03 -2.2 0.3 2 11 905 914 904 915 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 8 11 2.8 5.5e+03 -2.2 0.2 2 22 936 956 935 956 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 9 11 0.018 36 4.8 1.9 2 17 1055 1070 1054 1075 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 10 11 0.56 1.1e+03 0.0 0.6 7 21 1176 1191 1174 1193 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-201 - 1301 1e-06 28.9 0.7 11 11 1.3e-07 0.00026 21.2 0.1 3 24 1265 1286 1264 1287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 1 11 0.019 39 4.4 0.3 2 20 616 634 616 638 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 2 11 0.0067 13 5.9 0.2 3 20 755 772 755 772 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 3 11 0.51 1e+03 -0.1 0.1 2 9 811 818 811 818 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 4 11 2.2 4.4e+03 -2.2 0.2 2 17 842 857 842 860 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 5 11 0.49 9.7e+02 -0.1 0.2 2 13 870 881 869 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 6 11 0.07 1.4e+02 2.6 0.1 2 12 905 915 904 920 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 7 11 1.3 2.7e+03 -1.5 0.1 1 9 935 943 935 948 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 8 11 0.0013 2.6 8.1 5.3 2 25 1055 1079 1054 1081 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 9 11 0.22 4.4e+02 1.0 0.5 1 8 1173 1180 1173 1181 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 10 11 1.6 3.2e+03 -1.7 3.3 2 21 1203 1222 1202 1227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-201 - 1301 4.7e-06 26.5 0.2 11 11 2.4e-09 4.7e-06 26.5 0.2 3 24 1265 1286 1263 1287 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-211 - 252 3e-21 74.8 36.3 1 5 4.3e-06 0.0064 16.2 8.4 7 29 8 30 5 30 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-211 - 252 3e-21 74.8 36.3 2 5 0.00092 1.4 8.8 1.2 7 28 38 62 36 62 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-211 - 252 3e-21 74.8 36.3 3 5 0.47 7.1e+02 0.1 0.1 5 11 125 131 124 141 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-211 - 252 3e-21 74.8 36.3 4 5 2e-20 3e-17 62.1 3.8 1 29 150 178 150 178 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-211 - 252 3e-21 74.8 36.3 5 5 0.057 85 3.0 0.1 6 25 216 235 213 237 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-211 - 252 4.1e-12 45.9 43.6 1 5 1.2e-05 0.018 15.5 8.2 1 23 6 29 6 29 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-211 - 252 4.1e-12 45.9 43.6 2 5 8.1e-05 0.12 12.9 1.8 1 23 36 62 36 62 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-211 - 252 4.1e-12 45.9 43.6 3 5 0.041 61 4.4 1.0 1 20 125 144 125 147 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-211 - 252 4.1e-12 45.9 43.6 4 5 2.6e-05 0.038 14.4 3.4 1 23 154 177 154 177 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-211 - 252 4.1e-12 45.9 43.6 5 5 2.1e-07 0.00031 21.0 0.5 2 23 216 237 216 237 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-211 - 252 1e-10 41.5 40.6 1 5 0.00017 0.26 12.2 6.3 1 19 6 24 6 29 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-211 - 252 1e-10 41.5 40.6 2 5 0.0012 1.8 9.6 1.5 1 24 36 62 36 62 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-211 - 252 1e-10 41.5 40.6 3 5 0.018 26 6.0 1.1 1 20 125 142 125 147 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-211 - 252 1e-10 41.5 40.6 4 5 6.1e-05 0.091 13.6 3.7 1 24 154 177 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-211 - 252 1e-10 41.5 40.6 5 5 2e-07 0.0003 21.4 0.3 2 23 216 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-211 - 252 6.8e-07 29.1 0.2 1 5 0.00025 0.37 10.8 5.3 2 25 6 30 5 32 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-211 - 252 6.8e-07 29.1 0.2 2 5 7.7 1.1e+04 -3.5 1.6 1 7 35 41 35 41 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-211 - 252 6.8e-07 29.1 0.2 3 5 0.043 65 3.7 0.5 1 8 124 131 124 133 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-211 - 252 6.8e-07 29.1 0.2 4 5 0.32 4.8e+02 0.9 3.3 2 21 154 173 153 178 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-211 - 252 6.8e-07 29.1 0.2 5 5 4.5e-10 6.8e-07 29.1 0.2 3 24 216 237 214 238 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 1 11 0.00033 0.66 9.8 0.1 5 23 616 634 614 636 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 2 11 0.055 1.1e+02 2.7 0.2 4 23 753 772 751 774 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 3 11 4.3 8.5e+03 -3.4 0.1 6 11 812 817 809 818 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 4 11 0.0048 9.5 6.1 0.3 5 25 842 862 841 865 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 5 11 0.026 51 3.7 0.2 5 23 905 923 905 925 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 6 11 1.7 3.3e+03 -2.1 0.1 5 15 936 946 934 951 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 7 11 2.3e-05 0.045 13.5 8.4 7 29 1057 1079 1054 1079 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 8 11 0.0048 9.6 6.1 1.2 7 28 1087 1111 1085 1111 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 9 11 3.3 6.5e+03 -3.0 0.2 5 11 1174 1180 1174 1182 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 10 11 1.1e-19 2.2e-16 59.3 3.8 1 29 1199 1227 1199 1227 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-214 - 1301 2.2e-18 65.7 65.6 11 11 0.29 5.8e+02 0.4 0.1 6 25 1265 1284 1262 1286 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 1 15 0.012 24 5.7 0.2 1 20 616 635 616 637 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 2 15 0.011 22 5.7 3.6 2 23 645 668 644 668 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 3 15 0.0058 12 6.6 0.1 2 20 755 773 754 775 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 4 15 0.004 7.9 7.1 1.4 2 23 784 805 784 805 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 5 15 0.087 1.7e+02 2.9 4.1 1 20 811 829 811 835 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 6 15 5.1e-05 0.1 13.1 0.2 1 23 842 865 842 865 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 7 15 0.0002 0.4 11.2 1.0 1 23 870 893 870 893 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 8 15 9.9e-05 0.2 12.2 1.7 1 23 905 927 905 927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 9 15 0.00043 0.86 10.2 0.2 1 23 936 959 936 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 10 15 0.02 39 5.0 0.7 2 23 1026 1048 1025 1048 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 11 15 6.3e-05 0.13 12.8 8.2 1 23 1055 1078 1055 1078 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 12 15 0.00045 0.89 10.1 1.8 1 23 1085 1111 1085 1111 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 13 15 0.21 4.2e+02 1.7 1.0 1 20 1174 1193 1174 1196 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 14 15 0.00014 0.27 11.8 3.4 1 23 1203 1226 1203 1226 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-214 - 1301 5.3e-18 64.4 120.1 15 15 1.1e-06 0.0022 18.4 0.5 2 23 1265 1286 1265 1286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 1 15 0.0032 6.5 7.9 0.2 1 20 616 635 616 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 2 15 0.043 85 4.4 3.3 2 23 645 668 644 669 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 3 15 0.0025 5 8.2 0.1 2 21 755 774 754 776 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 4 15 0.067 1.3e+02 3.8 1.1 2 23 784 805 784 806 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 5 15 0.031 63 4.8 1.3 1 20 811 829 811 831 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 6 15 9.1e-05 0.18 12.7 0.4 1 24 842 865 842 865 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 7 15 0.0014 2.8 9.0 1.1 1 24 870 893 870 893 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 8 15 0.00015 0.3 12.1 0.8 1 23 905 927 905 928 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 9 15 0.00028 0.55 11.2 0.2 1 24 936 959 936 959 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 10 15 1.8 3.6e+03 -0.7 1.0 6 24 1030 1048 1025 1048 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 11 15 0.00092 1.8 9.6 6.3 1 19 1055 1073 1055 1078 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 12 15 0.0069 14 6.9 1.5 1 24 1085 1111 1085 1111 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 13 15 0.093 1.9e+02 3.4 1.1 1 20 1174 1191 1174 1196 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 14 15 0.00034 0.67 11.0 3.7 1 24 1203 1226 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-214 - 1301 4.9e-15 54.9 112.6 15 15 1.1e-06 0.0022 18.7 0.3 2 23 1265 1286 1264 1287 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 1 11 1.1 2.2e+03 -0.9 0.1 2 21 616 635 615 636 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 2 11 0.00058 1.1 9.6 0.4 2 21 754 773 753 775 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 3 11 8.5 1.7e+04 -3.7 2.2 4 27 785 808 784 808 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 4 11 3.7 7.3e+03 -2.6 0.2 2 12 811 821 810 824 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 5 11 7e-06 0.014 15.7 0.0 2 23 842 863 841 864 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 6 11 0.13 2.5e+02 2.1 0.2 2 14 870 882 870 882 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 7 11 2.9 5.8e+03 -2.2 0.3 2 11 905 914 904 915 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 8 11 2.8 5.5e+03 -2.2 0.2 2 22 936 956 935 956 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 9 11 0.018 36 4.8 1.9 2 17 1055 1070 1054 1075 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 10 11 0.56 1.1e+03 0.0 0.6 7 21 1176 1191 1174 1193 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-214 - 1301 1e-06 28.9 0.7 11 11 1.3e-07 0.00026 21.2 0.1 3 24 1265 1286 1264 1287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 1 11 0.019 39 4.4 0.3 2 20 616 634 616 638 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 2 11 0.0067 13 5.9 0.2 3 20 755 772 755 772 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 3 11 0.51 1e+03 -0.1 0.1 2 9 811 818 811 818 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 4 11 2.2 4.4e+03 -2.2 0.2 2 17 842 857 842 860 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 5 11 0.49 9.7e+02 -0.1 0.2 2 13 870 881 869 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 6 11 0.07 1.4e+02 2.6 0.1 2 12 905 915 904 920 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 7 11 1.3 2.7e+03 -1.5 0.1 1 9 935 943 935 948 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 8 11 0.0013 2.6 8.1 5.3 2 25 1055 1079 1054 1081 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 9 11 0.22 4.4e+02 1.0 0.5 1 8 1173 1180 1173 1181 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 10 11 1.6 3.2e+03 -1.7 3.3 2 21 1203 1222 1202 1227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-214 - 1301 4.7e-06 26.5 0.2 11 11 2.4e-09 4.7e-06 26.5 0.2 3 24 1265 1286 1263 1287 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-220 - 200 2.1e-17 62.5 3.8 1 4 0.21 2.6e+02 1.5 0.4 19 28 1 10 1 10 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-220 - 200 2.1e-17 62.5 3.8 2 4 0.42 5.4e+02 0.5 0.1 5 11 73 79 72 89 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-220 - 200 2.1e-17 62.5 3.8 3 4 1.7e-20 2.1e-17 62.5 3.8 1 29 98 126 98 126 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-220 - 200 2.1e-17 62.5 3.8 4 4 0.049 62 3.5 0.1 6 25 164 183 161 185 0.79 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF532-220 - 200 4.9e-07 29.6 0.2 1 3 0.039 50 4.1 0.5 1 8 72 79 72 81 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-220 - 200 4.9e-07 29.6 0.2 2 3 0.28 3.5e+02 1.3 3.4 2 21 102 121 101 126 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-220 - 200 4.9e-07 29.6 0.2 3 3 3.9e-10 4.9e-07 29.6 0.2 3 24 164 185 162 186 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-220 - 200 1.6e-06 28.2 3.4 1 2 0.085 1.1e+02 3.3 0.4 7 21 75 90 72 92 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-220 - 200 1.6e-06 28.2 3.4 2 2 2.1e-08 2.7e-05 24.3 0.1 3 24 164 185 163 186 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.6 24 ZNF532-220 - 200 3.9e-06 27.3 24.4 1 3 0.015 19 6.4 1.1 1 20 73 90 73 95 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-220 - 200 3.9e-06 27.3 24.4 2 3 5.2e-05 0.066 14.1 3.7 1 24 102 125 102 125 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-220 - 200 3.9e-06 27.3 24.4 3 3 1.7e-07 0.00021 21.8 0.3 2 23 164 185 163 186 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF532-220 - 200 8.7e-06 25.9 25.6 1 4 1.8 2.3e+03 -0.6 0.8 15 23 1 10 1 10 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-220 - 200 8.7e-06 25.9 25.6 2 4 0.035 45 4.8 1.0 1 20 73 92 73 95 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-220 - 200 8.7e-06 25.9 25.6 3 4 2.2e-05 0.028 14.9 3.4 1 23 102 125 102 125 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-220 - 200 8.7e-06 25.9 25.6 4 4 1.8e-07 0.00023 21.5 0.5 2 23 164 185 164 185 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 1 11 0.00033 0.66 9.8 0.1 5 23 616 634 614 636 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 2 11 0.055 1.1e+02 2.7 0.2 4 23 753 772 751 774 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 3 11 4.3 8.5e+03 -3.4 0.1 6 11 812 817 809 818 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 4 11 0.0048 9.5 6.1 0.3 5 25 842 862 841 865 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 5 11 0.026 51 3.7 0.2 5 23 905 923 905 925 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 6 11 1.7 3.3e+03 -2.1 0.1 5 15 936 946 934 951 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 7 11 2.3e-05 0.045 13.5 8.4 7 29 1057 1079 1054 1079 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 8 11 0.0048 9.6 6.1 1.2 7 28 1087 1111 1085 1111 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 9 11 3.3 6.5e+03 -3.0 0.2 5 11 1174 1180 1174 1182 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 10 11 1.1e-19 2.2e-16 59.3 3.8 1 29 1199 1227 1199 1227 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-222 - 1301 2.2e-18 65.7 65.6 11 11 0.29 5.8e+02 0.4 0.1 6 25 1265 1284 1262 1286 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 1 15 0.012 24 5.7 0.2 1 20 616 635 616 637 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 2 15 0.011 22 5.7 3.6 2 23 645 668 644 668 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 3 15 0.0058 12 6.6 0.1 2 20 755 773 754 775 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 4 15 0.004 7.9 7.1 1.4 2 23 784 805 784 805 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 5 15 0.087 1.7e+02 2.9 4.1 1 20 811 829 811 835 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 6 15 5.1e-05 0.1 13.1 0.2 1 23 842 865 842 865 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 7 15 0.0002 0.4 11.2 1.0 1 23 870 893 870 893 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 8 15 9.9e-05 0.2 12.2 1.7 1 23 905 927 905 927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 9 15 0.00043 0.86 10.2 0.2 1 23 936 959 936 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 10 15 0.02 39 5.0 0.7 2 23 1026 1048 1025 1048 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 11 15 6.3e-05 0.13 12.8 8.2 1 23 1055 1078 1055 1078 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 12 15 0.00045 0.89 10.1 1.8 1 23 1085 1111 1085 1111 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 13 15 0.21 4.2e+02 1.7 1.0 1 20 1174 1193 1174 1196 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 14 15 0.00014 0.27 11.8 3.4 1 23 1203 1226 1203 1226 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-222 - 1301 5.3e-18 64.4 120.1 15 15 1.1e-06 0.0022 18.4 0.5 2 23 1265 1286 1265 1286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 1 15 0.0032 6.5 7.9 0.2 1 20 616 635 616 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 2 15 0.043 85 4.4 3.3 2 23 645 668 644 669 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 3 15 0.0025 5 8.2 0.1 2 21 755 774 754 776 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 4 15 0.067 1.3e+02 3.8 1.1 2 23 784 805 784 806 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 5 15 0.031 63 4.8 1.3 1 20 811 829 811 831 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 6 15 9.1e-05 0.18 12.7 0.4 1 24 842 865 842 865 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 7 15 0.0014 2.8 9.0 1.1 1 24 870 893 870 893 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 8 15 0.00015 0.3 12.1 0.8 1 23 905 927 905 928 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 9 15 0.00028 0.55 11.2 0.2 1 24 936 959 936 959 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 10 15 1.8 3.6e+03 -0.7 1.0 6 24 1030 1048 1025 1048 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 11 15 0.00092 1.8 9.6 6.3 1 19 1055 1073 1055 1078 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 12 15 0.0069 14 6.9 1.5 1 24 1085 1111 1085 1111 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 13 15 0.093 1.9e+02 3.4 1.1 1 20 1174 1191 1174 1196 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 14 15 0.00034 0.67 11.0 3.7 1 24 1203 1226 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-222 - 1301 4.9e-15 54.9 112.6 15 15 1.1e-06 0.0022 18.7 0.3 2 23 1265 1286 1264 1287 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 1 11 1.1 2.2e+03 -0.9 0.1 2 21 616 635 615 636 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 2 11 0.00058 1.1 9.6 0.4 2 21 754 773 753 775 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 3 11 8.5 1.7e+04 -3.7 2.2 4 27 785 808 784 808 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 4 11 3.7 7.3e+03 -2.6 0.2 2 12 811 821 810 824 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 5 11 7e-06 0.014 15.7 0.0 2 23 842 863 841 864 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 6 11 0.13 2.5e+02 2.1 0.2 2 14 870 882 870 882 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 7 11 2.9 5.8e+03 -2.2 0.3 2 11 905 914 904 915 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 8 11 2.8 5.5e+03 -2.2 0.2 2 22 936 956 935 956 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 9 11 0.018 36 4.8 1.9 2 17 1055 1070 1054 1075 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 10 11 0.56 1.1e+03 0.0 0.6 7 21 1176 1191 1174 1193 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-222 - 1301 1e-06 28.9 0.7 11 11 1.3e-07 0.00026 21.2 0.1 3 24 1265 1286 1264 1287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 1 11 0.019 39 4.4 0.3 2 20 616 634 616 638 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 2 11 0.0067 13 5.9 0.2 3 20 755 772 755 772 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 3 11 0.51 1e+03 -0.1 0.1 2 9 811 818 811 818 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 4 11 2.2 4.4e+03 -2.2 0.2 2 17 842 857 842 860 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 5 11 0.49 9.7e+02 -0.1 0.2 2 13 870 881 869 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 6 11 0.07 1.4e+02 2.6 0.1 2 12 905 915 904 920 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 7 11 1.3 2.7e+03 -1.5 0.1 1 9 935 943 935 948 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 8 11 0.0013 2.6 8.1 5.3 2 25 1055 1079 1054 1081 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 9 11 0.22 4.4e+02 1.0 0.5 1 8 1173 1180 1173 1181 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 10 11 1.6 3.2e+03 -1.7 3.3 2 21 1203 1222 1202 1227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-222 - 1301 4.7e-06 26.5 0.2 11 11 2.4e-09 4.7e-06 26.5 0.2 3 24 1265 1286 1263 1287 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 1 11 0.00033 0.66 9.8 0.1 5 23 616 634 614 636 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 2 11 0.055 1.1e+02 2.7 0.2 4 23 753 772 751 774 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 3 11 4.3 8.5e+03 -3.4 0.1 6 11 812 817 809 818 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 4 11 0.0048 9.5 6.1 0.3 5 25 842 862 841 865 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 5 11 0.026 51 3.7 0.2 5 23 905 923 905 925 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 6 11 1.7 3.3e+03 -2.1 0.1 5 15 936 946 934 951 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 7 11 2.3e-05 0.045 13.5 8.4 7 29 1057 1079 1054 1079 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 8 11 0.0048 9.6 6.1 1.2 7 28 1087 1111 1085 1111 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 9 11 3.3 6.5e+03 -3.0 0.2 5 11 1174 1180 1174 1182 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 10 11 1.1e-19 2.2e-16 59.3 3.8 1 29 1199 1227 1199 1227 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-223 - 1301 2.2e-18 65.7 65.6 11 11 0.29 5.8e+02 0.4 0.1 6 25 1265 1284 1262 1286 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 1 15 0.012 24 5.7 0.2 1 20 616 635 616 637 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 2 15 0.011 22 5.7 3.6 2 23 645 668 644 668 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 3 15 0.0058 12 6.6 0.1 2 20 755 773 754 775 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 4 15 0.004 7.9 7.1 1.4 2 23 784 805 784 805 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 5 15 0.087 1.7e+02 2.9 4.1 1 20 811 829 811 835 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 6 15 5.1e-05 0.1 13.1 0.2 1 23 842 865 842 865 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 7 15 0.0002 0.4 11.2 1.0 1 23 870 893 870 893 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 8 15 9.9e-05 0.2 12.2 1.7 1 23 905 927 905 927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 9 15 0.00043 0.86 10.2 0.2 1 23 936 959 936 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 10 15 0.02 39 5.0 0.7 2 23 1026 1048 1025 1048 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 11 15 6.3e-05 0.13 12.8 8.2 1 23 1055 1078 1055 1078 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 12 15 0.00045 0.89 10.1 1.8 1 23 1085 1111 1085 1111 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 13 15 0.21 4.2e+02 1.7 1.0 1 20 1174 1193 1174 1196 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 14 15 0.00014 0.27 11.8 3.4 1 23 1203 1226 1203 1226 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-223 - 1301 5.3e-18 64.4 120.1 15 15 1.1e-06 0.0022 18.4 0.5 2 23 1265 1286 1265 1286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 1 15 0.0032 6.5 7.9 0.2 1 20 616 635 616 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 2 15 0.043 85 4.4 3.3 2 23 645 668 644 669 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 3 15 0.0025 5 8.2 0.1 2 21 755 774 754 776 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 4 15 0.067 1.3e+02 3.8 1.1 2 23 784 805 784 806 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 5 15 0.031 63 4.8 1.3 1 20 811 829 811 831 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 6 15 9.1e-05 0.18 12.7 0.4 1 24 842 865 842 865 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 7 15 0.0014 2.8 9.0 1.1 1 24 870 893 870 893 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 8 15 0.00015 0.3 12.1 0.8 1 23 905 927 905 928 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 9 15 0.00028 0.55 11.2 0.2 1 24 936 959 936 959 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 10 15 1.8 3.6e+03 -0.7 1.0 6 24 1030 1048 1025 1048 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 11 15 0.00092 1.8 9.6 6.3 1 19 1055 1073 1055 1078 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 12 15 0.0069 14 6.9 1.5 1 24 1085 1111 1085 1111 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 13 15 0.093 1.9e+02 3.4 1.1 1 20 1174 1191 1174 1196 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 14 15 0.00034 0.67 11.0 3.7 1 24 1203 1226 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-223 - 1301 4.9e-15 54.9 112.6 15 15 1.1e-06 0.0022 18.7 0.3 2 23 1265 1286 1264 1287 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 1 11 1.1 2.2e+03 -0.9 0.1 2 21 616 635 615 636 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 2 11 0.00058 1.1 9.6 0.4 2 21 754 773 753 775 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 3 11 8.5 1.7e+04 -3.7 2.2 4 27 785 808 784 808 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 4 11 3.7 7.3e+03 -2.6 0.2 2 12 811 821 810 824 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 5 11 7e-06 0.014 15.7 0.0 2 23 842 863 841 864 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 6 11 0.13 2.5e+02 2.1 0.2 2 14 870 882 870 882 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 7 11 2.9 5.8e+03 -2.2 0.3 2 11 905 914 904 915 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 8 11 2.8 5.5e+03 -2.2 0.2 2 22 936 956 935 956 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 9 11 0.018 36 4.8 1.9 2 17 1055 1070 1054 1075 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 10 11 0.56 1.1e+03 0.0 0.6 7 21 1176 1191 1174 1193 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-223 - 1301 1e-06 28.9 0.7 11 11 1.3e-07 0.00026 21.2 0.1 3 24 1265 1286 1264 1287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 1 11 0.019 39 4.4 0.3 2 20 616 634 616 638 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 2 11 0.0067 13 5.9 0.2 3 20 755 772 755 772 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 3 11 0.51 1e+03 -0.1 0.1 2 9 811 818 811 818 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 4 11 2.2 4.4e+03 -2.2 0.2 2 17 842 857 842 860 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 5 11 0.49 9.7e+02 -0.1 0.2 2 13 870 881 869 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 6 11 0.07 1.4e+02 2.6 0.1 2 12 905 915 904 920 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 7 11 1.3 2.7e+03 -1.5 0.1 1 9 935 943 935 948 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 8 11 0.0013 2.6 8.1 5.3 2 25 1055 1079 1054 1081 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 9 11 0.22 4.4e+02 1.0 0.5 1 8 1173 1180 1173 1181 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 10 11 1.6 3.2e+03 -1.7 3.3 2 21 1203 1222 1202 1227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-223 - 1301 4.7e-06 26.5 0.2 11 11 2.4e-09 4.7e-06 26.5 0.2 3 24 1265 1286 1263 1287 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 1 11 0.00033 0.66 9.8 0.1 5 23 616 634 614 636 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 2 11 0.055 1.1e+02 2.7 0.2 4 23 753 772 751 774 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 3 11 4.3 8.5e+03 -3.4 0.1 6 11 812 817 809 818 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 4 11 0.0048 9.5 6.1 0.3 5 25 842 862 841 865 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 5 11 0.026 51 3.7 0.2 5 23 905 923 905 925 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 6 11 1.7 3.3e+03 -2.1 0.1 5 15 936 946 934 951 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 7 11 2.3e-05 0.045 13.5 8.4 7 29 1057 1079 1054 1079 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 8 11 0.0048 9.6 6.1 1.2 7 28 1087 1111 1085 1111 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 9 11 3.3 6.5e+03 -3.0 0.2 5 11 1174 1180 1174 1182 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 10 11 1.1e-19 2.2e-16 59.3 3.8 1 29 1199 1227 1199 1227 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-224 - 1301 2.2e-18 65.7 65.6 11 11 0.29 5.8e+02 0.4 0.1 6 25 1265 1284 1262 1286 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 1 15 0.012 24 5.7 0.2 1 20 616 635 616 637 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 2 15 0.011 22 5.7 3.6 2 23 645 668 644 668 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 3 15 0.0058 12 6.6 0.1 2 20 755 773 754 775 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 4 15 0.004 7.9 7.1 1.4 2 23 784 805 784 805 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 5 15 0.087 1.7e+02 2.9 4.1 1 20 811 829 811 835 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 6 15 5.1e-05 0.1 13.1 0.2 1 23 842 865 842 865 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 7 15 0.0002 0.4 11.2 1.0 1 23 870 893 870 893 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 8 15 9.9e-05 0.2 12.2 1.7 1 23 905 927 905 927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 9 15 0.00043 0.86 10.2 0.2 1 23 936 959 936 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 10 15 0.02 39 5.0 0.7 2 23 1026 1048 1025 1048 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 11 15 6.3e-05 0.13 12.8 8.2 1 23 1055 1078 1055 1078 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 12 15 0.00045 0.89 10.1 1.8 1 23 1085 1111 1085 1111 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 13 15 0.21 4.2e+02 1.7 1.0 1 20 1174 1193 1174 1196 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 14 15 0.00014 0.27 11.8 3.4 1 23 1203 1226 1203 1226 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-224 - 1301 5.3e-18 64.4 120.1 15 15 1.1e-06 0.0022 18.4 0.5 2 23 1265 1286 1265 1286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 1 15 0.0032 6.5 7.9 0.2 1 20 616 635 616 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 2 15 0.043 85 4.4 3.3 2 23 645 668 644 669 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 3 15 0.0025 5 8.2 0.1 2 21 755 774 754 776 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 4 15 0.067 1.3e+02 3.8 1.1 2 23 784 805 784 806 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 5 15 0.031 63 4.8 1.3 1 20 811 829 811 831 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 6 15 9.1e-05 0.18 12.7 0.4 1 24 842 865 842 865 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 7 15 0.0014 2.8 9.0 1.1 1 24 870 893 870 893 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 8 15 0.00015 0.3 12.1 0.8 1 23 905 927 905 928 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 9 15 0.00028 0.55 11.2 0.2 1 24 936 959 936 959 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 10 15 1.8 3.6e+03 -0.7 1.0 6 24 1030 1048 1025 1048 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 11 15 0.00092 1.8 9.6 6.3 1 19 1055 1073 1055 1078 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 12 15 0.0069 14 6.9 1.5 1 24 1085 1111 1085 1111 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 13 15 0.093 1.9e+02 3.4 1.1 1 20 1174 1191 1174 1196 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 14 15 0.00034 0.67 11.0 3.7 1 24 1203 1226 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-224 - 1301 4.9e-15 54.9 112.6 15 15 1.1e-06 0.0022 18.7 0.3 2 23 1265 1286 1264 1287 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 1 11 1.1 2.2e+03 -0.9 0.1 2 21 616 635 615 636 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 2 11 0.00058 1.1 9.6 0.4 2 21 754 773 753 775 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 3 11 8.5 1.7e+04 -3.7 2.2 4 27 785 808 784 808 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 4 11 3.7 7.3e+03 -2.6 0.2 2 12 811 821 810 824 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 5 11 7e-06 0.014 15.7 0.0 2 23 842 863 841 864 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 6 11 0.13 2.5e+02 2.1 0.2 2 14 870 882 870 882 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 7 11 2.9 5.8e+03 -2.2 0.3 2 11 905 914 904 915 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 8 11 2.8 5.5e+03 -2.2 0.2 2 22 936 956 935 956 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 9 11 0.018 36 4.8 1.9 2 17 1055 1070 1054 1075 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 10 11 0.56 1.1e+03 0.0 0.6 7 21 1176 1191 1174 1193 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF532-224 - 1301 1e-06 28.9 0.7 11 11 1.3e-07 0.00026 21.2 0.1 3 24 1265 1286 1264 1287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 1 11 0.019 39 4.4 0.3 2 20 616 634 616 638 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 2 11 0.0067 13 5.9 0.2 3 20 755 772 755 772 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 3 11 0.51 1e+03 -0.1 0.1 2 9 811 818 811 818 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 4 11 2.2 4.4e+03 -2.2 0.2 2 17 842 857 842 860 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 5 11 0.49 9.7e+02 -0.1 0.2 2 13 870 881 869 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 6 11 0.07 1.4e+02 2.6 0.1 2 12 905 915 904 920 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 7 11 1.3 2.7e+03 -1.5 0.1 1 9 935 943 935 948 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 8 11 0.0013 2.6 8.1 5.3 2 25 1055 1079 1054 1081 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 9 11 0.22 4.4e+02 1.0 0.5 1 8 1173 1180 1173 1181 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 10 11 1.6 3.2e+03 -1.7 3.3 2 21 1203 1222 1202 1227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-224 - 1301 4.7e-06 26.5 0.2 11 11 2.4e-09 4.7e-06 26.5 0.2 3 24 1265 1286 1263 1287 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF532-225 - 370 1.7e-20 72.4 35.9 1 5 7.1e-06 0.011 15.5 8.4 7 29 126 148 123 148 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-225 - 370 1.7e-20 72.4 35.9 2 5 0.0015 2.2 8.1 1.2 7 28 156 180 154 180 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-225 - 370 1.7e-20 72.4 35.9 3 5 0.77 1.1e+03 -0.6 0.1 5 11 243 249 242 256 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-225 - 370 1.7e-20 72.4 35.9 4 5 3.3e-20 5e-17 61.3 3.8 1 29 268 296 268 296 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF532-225 - 370 1.7e-20 72.4 35.9 5 5 0.092 1.4e+02 2.4 0.1 6 25 334 353 331 355 0.79 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 1 6 0.0061 9.1 7.0 0.7 2 23 95 117 94 117 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 2 6 1.9e-05 0.029 14.8 8.2 1 23 124 147 124 147 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 3 6 0.00013 0.2 12.2 1.8 1 23 154 180 154 180 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 4 6 0.066 99 3.7 1.0 1 20 243 262 243 265 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 5 6 4.2e-05 0.063 13.8 3.4 1 23 272 295 272 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF532-225 - 370 1.2e-11 44.4 51.0 6 6 3.4e-07 0.00051 20.4 0.5 2 23 334 355 334 355 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 1 6 0.55 8.3e+02 1.3 1.0 6 24 99 117 94 117 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 2 6 0.00028 0.42 11.6 6.3 1 19 124 142 124 147 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 3 6 0.002 3.1 8.9 1.5 1 24 154 180 154 180 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 4 6 0.029 43 5.3 1.1 1 20 243 260 243 265 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 5 6 0.0001 0.15 13.0 3.7 1 24 272 295 272 295 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF532-225 - 370 2.4e-08 34.1 48.6 6 6 3.3e-07 0.00049 20.7 0.3 2 23 334 355 333 356 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-225 - 370 1.1e-06 28.5 0.2 1 4 0.00041 0.61 10.2 5.3 2 25 124 148 123 150 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-225 - 370 1.1e-06 28.5 0.2 2 4 0.067 1e+02 3.1 0.5 1 8 242 249 242 251 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-225 - 370 1.1e-06 28.5 0.2 3 4 0.52 7.7e+02 0.3 3.3 2 21 272 291 271 296 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF532-225 - 370 1.1e-06 28.5 0.2 4 4 7.4e-10 1.1e-06 28.5 0.2 3 24 334 355 332 356 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 1 23 5.9e-05 0.059 13.8 1.3 7 25 209 227 206 228 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 2 23 1.2e-10 1.1e-07 31.9 0.3 2 24 232 254 231 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 3 23 1.1e-07 0.00011 22.4 0.7 2 24 260 282 259 283 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 4 23 2.5e-10 2.5e-07 30.8 1.2 1 25 287 311 287 312 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 5 23 1.8e-08 1.8e-05 25.0 0.2 1 24 315 338 315 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 6 23 5.4e-11 5.4e-08 32.9 0.6 2 24 344 366 343 367 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 7 23 1.7e-09 1.7e-06 28.2 3.0 3 26 373 396 370 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 8 23 1.4e-11 1.4e-08 34.8 0.9 2 25 400 423 399 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 9 23 1.5e-11 1.5e-08 34.7 0.6 2 24 428 450 427 451 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 10 23 6.7e-11 6.7e-08 32.6 4.3 2 24 456 478 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 11 23 2.3e-10 2.3e-07 30.9 0.3 2 26 484 508 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 12 23 7.8e-09 7.8e-06 26.1 1.2 1 24 511 534 511 535 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 13 23 5.9e-08 5.8e-05 23.3 6.0 2 26 540 564 539 564 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 14 23 3.3e-05 0.032 14.6 0.4 4 25 570 591 568 592 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 15 23 1.9e-09 1.9e-06 28.0 0.5 1 24 595 618 595 619 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 16 23 2e-10 2e-07 31.1 1.4 2 24 624 646 623 648 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 17 23 1.4e-10 1.4e-07 31.6 3.6 1 25 651 675 651 676 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 18 23 2.7e-06 0.0027 18.1 2.5 1 24 679 702 679 704 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 19 23 2.8e-10 2.8e-07 30.7 0.5 2 25 708 731 707 732 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 20 23 1.9e-09 1.9e-06 28.0 2.1 1 24 735 758 735 759 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 21 23 1.1e-10 1.1e-07 31.9 2.1 2 25 764 787 763 787 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 22 23 1.4e-11 1.4e-08 34.8 1.5 2 24 792 814 791 816 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-201 - 836 8.3e-157 503.4 181.9 23 23 2.4 2.3e+03 -0.7 0.0 2 12 820 830 819 834 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 1 22 4.4e-08 4.4e-05 23.7 0.9 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 2 22 4.1e-06 0.004 17.5 2.3 1 23 245 267 245 267 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 3 22 4.8e-07 0.00048 20.4 3.4 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 4 22 1.5e-07 0.00015 22.0 0.3 1 23 301 323 301 323 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 5 22 2.9e-07 0.00029 21.1 1.5 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 6 22 3.6e-06 0.0036 17.7 2.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 7 22 1.5e-07 0.00015 22.0 1.2 1 23 385 407 385 407 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 8 22 7e-08 7e-05 23.1 1.5 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 9 22 2.1e-07 0.00021 21.5 2.4 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 10 22 3e-05 0.029 14.8 1.2 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 11 22 1.2e-08 1.2e-05 25.5 3.9 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 12 22 1.4e-07 0.00014 22.1 0.7 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 13 22 1.9e-07 0.00019 21.7 1.1 1 23 553 575 553 575 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 14 22 5e-08 5e-05 23.5 1.3 1 23 581 603 581 603 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 15 22 2.3e-07 0.00023 21.4 1.4 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 16 22 9.4e-08 9.3e-05 22.7 4.1 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 17 22 3.9e-07 0.00039 20.7 7.3 1 23 665 687 665 687 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 18 22 0.0017 1.7 9.3 1.0 1 23 693 715 693 715 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 19 22 3.1e-08 3.1e-05 24.2 4.8 1 23 721 743 721 743 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 20 22 2.1e-05 0.02 15.3 0.6 1 23 749 771 749 771 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 21 22 1.2e-08 1.2e-05 25.5 1.8 1 23 777 799 777 799 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-201 - 836 4e-106 341.9 196.7 22 22 8.2e-09 8.2e-06 26.0 0.5 1 23 805 827 805 827 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 1 22 6e-05 0.06 14.2 0.8 1 23 217 239 217 240 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 2 22 0.0003 0.3 12.1 1.4 1 23 245 267 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 3 22 0.00093 0.93 10.5 2.9 1 23 273 295 273 296 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 4 22 1.4e-05 0.014 16.2 0.2 1 23 301 323 301 324 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 5 22 0.00034 0.34 11.9 1.3 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 6 22 4.1e-05 0.041 14.7 1.7 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 7 22 0.00026 0.26 12.2 1.1 1 23 385 407 385 408 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 8 22 2.2e-05 0.022 15.6 1.4 1 23 413 435 413 436 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 9 22 6e-05 0.06 14.2 1.7 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 10 22 5.6e-05 0.056 14.3 1.2 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 11 22 1.9e-06 0.0019 18.9 2.7 1 23 497 519 497 520 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 12 22 0.00018 0.18 12.7 0.5 1 23 525 547 525 548 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 13 22 0.00073 0.73 10.8 0.9 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 14 22 4.5e-06 0.0044 17.7 0.8 1 23 581 603 581 604 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 15 22 0.00037 0.37 11.7 1.0 1 23 609 631 609 632 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 16 22 0.00021 0.21 12.5 2.7 1 23 637 659 637 660 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 17 22 9e-05 0.09 13.7 5.2 1 23 665 687 665 688 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 18 22 0.0023 2.3 9.3 0.7 1 23 693 715 693 716 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 19 22 5.6e-06 0.0056 17.4 3.5 1 23 721 743 721 744 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 20 22 0.0026 2.6 9.1 0.6 1 23 749 771 749 772 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 21 22 2.7e-05 0.027 15.3 1.4 1 23 777 799 777 800 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-201 - 836 1.7e-56 184.0 180.5 22 22 6.9e-05 0.069 14.0 0.3 1 23 805 827 805 828 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 1 22 0.00026 0.26 11.3 0.7 2 24 217 239 216 242 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 2 22 0.059 59 3.8 0.8 2 11 245 254 245 265 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 3 22 0.00074 0.74 9.9 3.4 2 24 273 295 273 297 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 4 22 5.5e-05 0.055 13.5 0.1 2 20 301 319 301 324 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 5 22 0.00017 0.16 12.0 1.6 2 24 329 351 329 354 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 6 22 0.00021 0.21 11.6 0.7 2 12 357 367 357 369 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 7 22 0.0023 2.3 8.3 1.2 2 12 385 395 385 407 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 8 22 0.00013 0.13 12.3 1.0 2 12 413 423 413 436 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 9 22 2.3e-05 0.023 14.7 1.7 2 24 441 463 441 466 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 10 22 4.7e-05 0.047 13.7 1.9 2 24 469 491 469 494 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 11 22 1.6e-05 0.016 15.2 2.8 2 20 497 515 497 521 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 12 22 0.00079 0.78 9.8 0.4 2 20 525 543 525 547 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 13 22 0.0034 3.4 7.8 1.1 2 11 553 562 553 562 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 14 22 6.6e-05 0.065 13.2 0.6 2 20 581 599 580 605 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 15 22 6e-05 0.06 13.4 0.8 2 24 609 631 609 634 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 16 22 0.16 1.6e+02 2.4 6.2 2 11 637 646 637 658 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 17 22 0.00044 0.43 10.6 6.0 2 24 665 687 665 690 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 18 22 0.04 40 4.4 0.1 2 11 693 702 693 703 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 19 22 0.00013 0.13 12.3 2.7 2 20 721 739 721 744 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 20 22 0.0091 9.1 6.4 0.5 2 20 749 767 749 772 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 21 22 0.0012 1.1 9.3 0.7 2 12 777 787 777 799 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-201 - 836 1.5e-35 120.5 177.8 22 22 0.00073 0.73 9.9 0.4 2 24 805 827 805 830 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF546-201 - 836 1.3e-22 79.2 0.3 1 1 2.4e-25 2.4e-22 78.3 0.3 1 42 59 100 59 100 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 1 20 0.83 8.3e+02 0.2 0.3 10 18 177 185 175 194 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 2 20 0.0083 8.2 6.6 5.3 6 38 217 256 216 258 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 3 20 0.0057 5.7 7.2 6.5 6 35 245 281 243 283 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 4 20 1.5e-05 0.015 15.4 4.4 6 39 273 313 272 314 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 5 20 1.5e-05 0.015 15.4 4.3 6 36 301 338 298 342 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 6 20 1.8e-05 0.018 15.1 4.1 6 38 329 370 328 372 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 7 20 0.0018 1.8 8.7 0.2 6 23 357 374 356 379 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 8 20 9.3e-06 0.0092 16.1 3.7 6 34 385 420 384 423 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 9 20 0.00014 0.14 12.3 5.7 6 36 413 450 412 453 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 10 20 0.0018 1.8 8.7 6.8 6 34 441 476 439 478 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 11 20 5.9e-05 0.059 13.5 3.3 6 36 497 534 496 537 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 12 20 0.00095 0.95 9.6 4.8 6 34 525 560 516 565 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 13 20 4.6e-05 0.045 13.9 3.1 6 36 553 590 551 594 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 14 20 4.4e-05 0.044 13.9 1.5 6 36 581 618 580 622 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 15 20 0.00052 0.51 10.5 3.4 6 35 609 645 608 649 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 16 20 0.00027 0.27 11.4 5.2 6 38 637 676 636 678 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 17 20 0.00023 0.23 11.6 3.7 6 34 665 700 664 703 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 18 20 9.4e-05 0.093 12.9 3.7 6 39 693 733 692 734 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 19 20 9.4e-05 0.094 12.9 4.4 6 35 721 757 719 762 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-201 - 836 2.3e-22 78.8 131.7 20 20 5.5e-06 0.0055 16.8 2.1 6 35 777 813 776 817 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 1 20 0.0018 1.8 8.9 0.9 2 22 217 237 216 237 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 2 20 1.9 1.9e+03 -0.7 0.3 2 11 245 254 244 263 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 3 20 0.056 55 4.2 0.7 2 21 273 292 272 293 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 4 20 0.00084 0.84 10.0 0.0 2 21 301 320 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 5 20 0.0058 5.8 7.3 0.4 2 22 329 349 328 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 6 20 0.0083 8.3 6.8 0.4 2 21 357 376 356 377 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 7 20 0.026 26 5.2 0.4 2 22 385 405 384 405 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 8 20 0.015 15 6.0 0.2 2 20 413 431 412 433 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 9 20 0.62 6.1e+02 0.9 0.1 2 20 441 459 440 463 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 10 20 0.0079 7.9 6.9 0.3 2 24 469 491 468 491 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 11 20 1.6e-05 0.016 15.5 0.5 2 22 497 517 496 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 12 20 1.1 1.1e+03 0.0 0.0 2 12 525 535 524 543 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 13 20 3.3e-05 0.033 14.5 0.7 2 22 553 573 552 573 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 14 20 0.00011 0.11 12.9 0.7 2 22 581 601 580 601 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 15 20 0.47 4.7e+02 1.3 0.2 2 20 609 627 608 627 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 16 20 0.0048 4.7 7.6 0.4 2 20 637 655 636 656 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 17 20 0.00033 0.33 11.3 1.3 2 21 665 684 664 687 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 18 20 9.4e-05 0.094 13.0 0.4 2 22 721 741 720 741 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 19 20 0.062 62 4.0 0.1 2 20 777 795 776 795 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-201 - 836 1.4e-19 69.8 114.4 20 20 0.0014 1.4 9.3 0.2 4 23 807 826 804 828 0.90 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 1 22 0.0041 4.1 7.5 0.2 3 19 218 235 217 237 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 2 22 0.012 12 6.0 1.1 3 12 246 255 244 256 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 3 22 0.012 12 6.1 0.1 3 12 274 283 272 290 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 4 22 0.016 16 5.6 0.3 3 12 302 311 300 312 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 5 22 0.014 14 5.8 0.1 3 12 330 339 328 345 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 6 22 0.29 2.9e+02 1.6 0.1 3 11 358 366 356 370 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 7 22 0.0016 1.6 8.8 0.1 3 19 386 403 384 404 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 8 22 0.03 30 4.8 0.5 3 11 414 422 412 423 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 9 22 0.021 21 5.3 0.1 3 11 442 450 440 453 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 10 22 0.028 27 4.9 0.8 3 11 470 478 468 482 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 11 22 0.0045 4.4 7.4 0.1 3 15 498 510 496 516 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 12 22 0.044 43 4.2 0.1 3 11 526 534 524 537 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 13 22 0.005 5 7.3 0.2 3 14 554 565 552 566 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 14 22 0.0091 9 6.4 0.1 3 15 582 594 581 602 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 15 22 0.052 51 4.0 0.2 3 11 610 618 608 621 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 16 22 0.0048 4.8 7.3 0.0 3 14 638 649 636 655 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 17 22 0.01 10 6.3 0.1 3 15 666 678 664 683 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 18 22 0.025 25 5.0 0.2 3 15 694 706 692 709 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 19 22 0.0032 3.2 7.9 0.1 3 15 722 734 720 743 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 20 22 0.19 1.9e+02 2.2 0.1 4 11 751 758 748 761 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 21 22 0.0097 9.7 6.3 0.1 3 12 778 787 776 795 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-201 - 836 1.6e-19 69.6 97.1 22 22 0.0089 8.9 6.5 0.1 3 14 806 817 804 818 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 1 12 0.029 29 5.5 2.8 31 74 210 253 206 259 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 2 12 0.0016 1.6 9.5 0.4 36 75 271 310 262 315 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 3 12 0.0088 8.7 7.2 1.0 36 75 327 366 319 375 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 4 12 0.0026 2.6 8.8 1.5 35 76 382 423 372 428 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 5 12 0.00049 0.49 11.2 2.0 32 75 435 478 429 484 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 6 12 0.0054 5.4 7.8 6.4 29 81 516 568 486 571 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 7 12 0.0043 4.3 8.2 4.1 36 79 551 594 543 599 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 8 12 3.6e-05 0.036 14.8 1.2 25 77 568 620 567 624 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 9 12 0.0005 0.5 11.2 0.9 29 75 600 646 596 652 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 10 12 0.0012 1.2 9.9 1.8 31 77 658 704 652 709 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 11 12 0.0011 1 10.1 0.3 35 75 718 758 711 764 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-201 - 836 2.6e-11 44.1 92.9 12 12 0.0005 0.5 11.1 1.2 35 75 774 814 768 819 0.85 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 1 22 0.09 90 2.8 0.2 2 12 216 226 215 235 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 2 22 0.64 6.3e+02 0.1 1.4 3 12 245 254 243 256 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 3 22 0.0016 1.6 8.4 0.8 3 21 273 292 271 292 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 4 22 0.015 15 5.3 0.1 3 14 301 312 299 320 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 5 22 0.00018 0.18 11.4 0.4 3 21 329 348 327 348 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 6 22 0.26 2.6e+02 1.3 0.3 3 15 357 369 355 376 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 7 22 0.021 21 4.8 0.1 3 14 385 396 383 404 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 8 22 0.00088 0.88 9.2 0.3 3 20 413 431 411 432 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 9 22 0.057 57 3.4 0.3 3 20 441 459 439 460 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 10 22 0.039 39 3.9 0.4 3 13 469 479 467 488 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 11 22 0.0051 5.1 6.8 0.4 3 19 497 514 496 515 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 12 22 0.023 23 4.7 0.1 3 20 525 543 523 544 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 13 22 0.0021 2.1 8.0 0.5 3 21 553 572 551 572 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 14 22 0.0015 1.5 8.4 0.1 1 18 579 597 579 599 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 15 22 0.012 12 5.6 0.3 3 20 609 627 607 628 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 16 22 0.017 17 5.1 0.4 3 20 637 655 635 656 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 17 22 0.0052 5.2 6.7 1.4 3 20 665 683 663 684 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 18 22 0.19 1.9e+02 1.7 0.3 3 14 693 704 691 712 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 19 22 0.01 9.9 5.9 0.3 3 14 721 732 720 739 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 20 22 0.074 74 3.1 0.1 3 17 749 764 747 768 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 21 22 0.00097 0.97 9.1 0.2 3 20 777 795 775 796 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-201 - 836 4.5e-11 42.2 121.7 22 22 0.0063 6.3 6.5 0.1 3 16 805 819 803 824 0.78 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 1 21 0.064 64 3.6 1.3 35 46 218 229 211 231 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 2 21 0.39 3.8e+02 1.1 0.7 4 14 244 254 242 256 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 3 21 0.13 1.3e+02 2.5 0.1 4 14 272 282 269 284 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 4 21 0.11 1.1e+02 2.8 0.2 3 14 299 310 299 311 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 5 21 0.15 1.5e+02 2.4 0.1 4 14 328 338 326 340 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 6 21 0.27 2.7e+02 1.5 0.1 4 14 356 366 354 368 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 7 21 0.089 88 3.1 0.1 3 14 383 394 382 398 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 8 21 0.0031 3.1 7.8 3.4 3 40 411 447 409 453 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 9 21 0.03 30 4.6 0.7 3 15 467 479 465 480 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 10 21 0.11 1.1e+02 2.8 0.2 4 14 496 506 494 507 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 11 21 0.073 73 3.4 0.0 3 14 523 534 521 536 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 12 21 0.0058 5.7 6.9 0.1 3 17 551 565 550 567 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 13 21 0.083 83 3.2 0.1 3 14 579 590 577 591 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 14 21 0.0068 6.8 6.7 0.1 3 17 607 621 605 630 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 15 21 0.015 15 5.6 0.1 3 15 635 647 633 651 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 16 21 0.11 1.1e+02 2.8 0.2 3 14 663 674 661 675 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 17 21 0.021 21 5.1 0.2 3 15 691 703 689 706 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 18 21 0.14 1.4e+02 2.4 0.1 5 14 721 730 718 731 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 19 21 0.042 42 4.2 0.0 3 14 747 758 745 764 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 20 21 0.021 21 5.1 0.1 3 14 775 786 773 788 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-201 - 836 3.9e-07 29.9 99.5 21 21 0.0081 8.1 6.4 0.1 3 15 803 815 801 819 0.89 Probable zinc-ribbon domain zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 1 11 0.31 3.1e+02 2.0 5.0 79 122 223 265 159 268 0.64 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 2 11 0.015 15 6.2 0.3 92 125 291 323 285 324 0.84 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 3 11 0.22 2.2e+02 2.5 0.2 98 121 325 348 322 352 0.83 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 4 11 0.088 88 3.8 0.2 93 121 348 376 343 380 0.78 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 5 11 0.014 14 6.4 0.7 91 122 402 433 386 436 0.83 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 6 11 0.00061 0.61 10.8 0.2 98 123 437 462 433 465 0.89 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 7 11 0.0024 2.4 8.8 2.6 90 122 513 545 469 549 0.84 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 8 11 0.068 68 4.2 5.1 84 122 591 629 546 633 0.61 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 9 11 0.48 4.7e+02 1.4 10.5 88 122 735 769 639 772 0.72 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 10 11 0.0036 3.5 8.3 0.1 98 122 773 797 769 800 0.89 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-201 - 836 8.2e-06 26.5 83.0 11 11 0.14 1.4e+02 3.1 0.0 33 52 805 824 802 833 0.85 Zinc finger C2H2-type, 3 repeats # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:21 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 1 23 5.7e-05 0.057 13.9 1.3 7 25 183 201 180 202 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 2 23 1.1e-10 1.1e-07 31.9 0.3 2 24 206 228 205 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 3 23 1.1e-07 0.00011 22.5 0.7 2 24 234 256 233 257 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 4 23 2.4e-10 2.4e-07 30.9 1.2 1 25 261 285 261 286 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 5 23 1.7e-08 1.7e-05 25.0 0.2 1 24 289 312 289 313 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 6 23 5.2e-11 5.2e-08 33.0 0.6 2 24 318 340 317 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 7 23 1.7e-09 1.7e-06 28.2 3.0 3 26 347 370 344 370 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 8 23 1.3e-11 1.3e-08 34.8 0.9 2 25 374 397 373 397 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 9 23 1.4e-11 1.4e-08 34.7 0.6 2 24 402 424 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 10 23 6.5e-11 6.5e-08 32.7 4.3 2 24 430 452 429 454 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 11 23 2.2e-10 2.2e-07 31.0 0.3 2 26 458 482 457 482 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 12 23 7.5e-09 7.5e-06 26.1 1.2 1 24 485 508 485 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 13 23 5.7e-08 5.6e-05 23.4 6.0 2 26 514 538 513 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 14 23 3.1e-05 0.031 14.7 0.4 4 25 544 565 542 566 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 15 23 1.8e-09 1.8e-06 28.1 0.5 1 24 569 592 569 593 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 16 23 1.9e-10 1.9e-07 31.2 1.4 2 24 598 620 597 622 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 17 23 1.3e-10 1.3e-07 31.7 3.6 1 25 625 649 625 650 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 18 23 2.6e-06 0.0026 18.1 2.5 1 24 653 676 653 678 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 19 23 2.7e-10 2.7e-07 30.7 0.5 2 25 682 705 681 706 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 20 23 1.8e-09 1.8e-06 28.1 2.1 1 24 709 732 709 733 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 21 23 1.1e-10 1.1e-07 32.0 2.1 2 25 738 761 737 761 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 22 23 1.4e-11 1.4e-08 34.8 1.5 2 24 766 788 765 790 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF546-207 - 810 3.7e-157 504.5 181.9 23 23 2.3 2.3e+03 -0.7 0.0 2 12 794 804 793 808 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 1 22 4.3e-08 4.3e-05 23.7 0.9 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 2 22 3.9e-06 0.0039 17.6 2.3 1 23 219 241 219 241 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 3 22 4.6e-07 0.00046 20.5 3.4 1 23 247 269 247 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 4 22 1.4e-07 0.00014 22.1 0.3 1 23 275 297 275 297 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 5 22 2.8e-07 0.00028 21.2 1.5 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 6 22 3.4e-06 0.0034 17.7 2.1 1 23 331 353 331 353 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 7 22 1.5e-07 0.00015 22.0 1.2 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 8 22 6.8e-08 6.7e-05 23.1 1.5 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 9 22 2.1e-07 0.00021 21.6 2.4 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 10 22 2.9e-05 0.028 14.9 1.2 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 11 22 1.2e-08 1.2e-05 25.5 3.9 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 12 22 1.3e-07 0.00013 22.2 0.7 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 13 22 1.8e-07 0.00018 21.8 1.1 1 23 527 549 527 549 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 14 22 4.8e-08 4.8e-05 23.6 1.3 1 23 555 577 555 577 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 15 22 2.3e-07 0.00023 21.5 1.4 1 23 583 605 583 605 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 16 22 9e-08 9e-05 22.7 4.1 1 23 611 633 611 633 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 17 22 3.8e-07 0.00038 20.8 7.3 1 23 639 661 639 661 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 18 22 0.0016 1.6 9.3 1.0 1 23 667 689 667 689 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 19 22 3e-08 3e-05 24.2 4.8 1 23 695 717 695 717 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 20 22 2e-05 0.02 15.3 0.6 1 23 723 745 723 745 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 21 22 1.1e-08 1.1e-05 25.5 1.8 1 23 751 773 751 773 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF546-207 - 810 1.8e-106 343.0 196.7 22 22 7.9e-09 7.9e-06 26.1 0.5 1 23 779 801 779 801 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 1 22 5.8e-05 0.058 14.3 0.8 1 23 191 213 191 214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 2 22 0.00029 0.29 12.1 1.4 1 23 219 241 219 242 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 3 22 0.0009 0.89 10.6 2.9 1 23 247 269 247 270 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 4 22 1.4e-05 0.014 16.2 0.2 1 23 275 297 275 298 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 5 22 0.00033 0.33 11.9 1.3 1 23 303 325 303 326 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 6 22 4e-05 0.04 14.8 1.7 1 23 331 353 331 354 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 7 22 0.00025 0.25 12.3 1.1 1 23 359 381 359 382 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 8 22 2.1e-05 0.021 15.6 1.4 1 23 387 409 387 410 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 9 22 5.8e-05 0.058 14.3 1.7 1 23 415 437 415 438 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 10 22 5.4e-05 0.054 14.4 1.2 1 23 443 465 443 466 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 11 22 1.8e-06 0.0018 19.0 2.7 1 23 471 493 471 494 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 12 22 0.00017 0.17 12.8 0.5 1 23 499 521 499 522 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 13 22 0.00071 0.7 10.9 0.9 1 23 527 549 527 550 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 14 22 4.3e-06 0.0043 17.8 0.8 1 23 555 577 555 578 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 15 22 0.00036 0.36 11.8 1.0 1 23 583 605 583 606 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 16 22 0.0002 0.2 12.6 2.7 1 23 611 633 611 634 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 17 22 8.7e-05 0.087 13.7 5.2 1 23 639 661 639 662 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 18 22 0.0022 2.2 9.3 0.7 1 23 667 689 667 690 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 19 22 5.4e-06 0.0054 17.5 3.5 1 23 695 717 695 718 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 20 22 0.0025 2.5 9.2 0.6 1 23 723 745 723 746 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 21 22 2.6e-05 0.026 15.4 1.4 1 23 751 773 751 774 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF546-207 - 810 7.6e-57 185.0 180.5 22 22 6.7e-05 0.067 14.1 0.3 1 23 779 801 779 802 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 1 22 0.00025 0.25 11.4 0.7 2 24 191 213 190 216 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 2 22 0.057 57 3.9 0.8 2 11 219 228 219 239 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 3 22 0.00071 0.71 9.9 3.4 2 24 247 269 247 271 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 4 22 5.3e-05 0.053 13.5 0.1 2 20 275 293 275 298 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 5 22 0.00016 0.16 12.0 1.6 2 24 303 325 303 328 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 6 22 0.0002 0.2 11.7 0.7 2 12 331 341 331 343 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 7 22 0.0022 2.2 8.4 1.2 2 12 359 369 359 381 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 8 22 0.00013 0.13 12.3 1.0 2 12 387 397 387 410 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 9 22 2.2e-05 0.022 14.7 1.7 2 24 415 437 415 440 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 10 22 4.6e-05 0.046 13.7 1.9 2 24 443 465 443 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 11 22 1.5e-05 0.015 15.3 2.8 2 20 471 489 471 495 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 12 22 0.00076 0.76 9.9 0.4 2 20 499 517 499 521 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 13 22 0.0033 3.3 7.8 1.1 2 11 527 536 527 536 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 14 22 6.3e-05 0.063 13.3 0.6 2 20 555 573 554 579 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 15 22 5.8e-05 0.058 13.4 0.8 2 24 583 605 583 608 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 16 22 0.18 1.8e+02 2.3 6.4 2 11 611 620 611 632 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 17 22 0.00042 0.42 10.7 6.0 2 24 639 661 639 664 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 18 22 0.039 38 4.4 0.1 2 11 667 676 667 677 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 19 22 0.00012 0.12 12.4 2.7 2 20 695 713 695 718 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 20 22 0.0088 8.7 6.5 0.5 2 20 723 741 723 746 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 21 22 0.0011 1.1 9.3 0.7 2 12 751 761 751 773 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF546-207 - 810 7.8e-36 121.4 177.9 22 22 0.00071 0.71 10.0 0.4 2 24 779 801 779 804 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF546-207 - 810 1.2e-22 79.3 0.3 1 1 2.3e-25 2.3e-22 78.3 0.3 1 42 33 74 33 74 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 1 20 0.8 8e+02 0.3 0.3 10 18 151 159 149 168 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 2 20 0.0088 8.7 6.6 5.4 6 38 191 230 190 232 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 3 20 0.0053 5.3 7.3 6.4 6 35 219 255 217 257 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 4 20 1.4e-05 0.013 15.6 4.3 6 39 247 287 246 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 5 20 1.4e-05 0.014 15.5 4.2 6 36 275 312 272 314 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 6 20 1.7e-05 0.017 15.2 4.1 6 38 303 344 302 346 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 7 20 0.0018 1.8 8.8 0.2 6 23 331 348 330 353 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 8 20 9.3e-06 0.0093 16.1 3.8 6 34 359 394 358 397 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 9 20 0.0017 1.7 8.8 6.9 6 34 415 450 413 453 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 10 20 6.1e-05 0.061 13.5 3.4 6 36 471 508 470 511 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 11 20 0.00098 0.98 9.6 4.8 6 34 499 534 498 537 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 12 20 3.8e-05 0.038 14.1 2.9 6 36 527 564 526 568 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 13 20 3.9e-05 0.039 14.1 1.4 6 36 555 592 554 596 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 14 20 0.0005 0.5 10.5 3.5 6 35 583 619 582 624 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 15 20 0.00027 0.26 11.4 5.2 6 38 611 650 610 652 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 16 20 0.00022 0.22 11.7 3.8 6 34 639 674 638 677 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 17 20 9.3e-05 0.093 12.9 3.7 6 39 667 707 666 708 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 18 20 0.00012 0.12 12.5 4.8 6 35 695 731 692 736 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 19 20 0.031 31 4.8 0.3 6 16 723 733 722 741 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF546-207 - 810 1.3e-22 79.6 131.7 20 20 5.3e-06 0.0053 16.8 2.1 6 35 751 787 750 791 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 1 20 0.0018 1.7 9.0 0.9 2 22 191 211 190 211 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 2 20 1.8 1.8e+03 -0.6 0.3 2 11 219 228 218 237 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 3 20 0.054 54 4.2 0.7 2 21 247 266 246 267 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 4 20 0.00081 0.81 10.1 0.0 2 21 275 294 274 295 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 5 20 0.0056 5.6 7.4 0.4 2 22 303 323 302 323 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 6 20 0.0081 8 6.9 0.4 2 21 331 350 330 351 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 7 20 0.025 25 5.3 0.4 2 22 359 379 358 379 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 8 20 0.015 15 6.0 0.2 2 20 387 405 386 407 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 9 20 0.6 5.9e+02 0.9 0.1 2 20 415 433 414 437 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 10 20 0.0076 7.6 7.0 0.3 2 24 443 465 442 465 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 11 20 1.6e-05 0.015 15.5 0.5 2 22 471 491 470 491 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 12 20 1.1 1.1e+03 0.1 0.0 2 12 499 509 498 517 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 13 20 3.2e-05 0.032 14.5 0.7 2 22 527 547 526 547 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 14 20 0.0001 0.1 12.9 0.7 2 22 555 575 554 575 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 15 20 0.45 4.5e+02 1.3 0.2 2 20 583 601 582 601 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 16 20 0.0046 4.6 7.7 0.4 2 20 611 629 610 630 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 17 20 0.00032 0.32 11.3 1.3 2 21 639 658 638 661 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 18 20 9.1e-05 0.091 13.1 0.4 2 22 695 715 694 715 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 19 20 0.06 60 4.1 0.1 2 20 751 769 750 769 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF546-207 - 810 5e-20 71.3 113.9 20 20 0.0014 1.4 9.3 0.2 4 23 781 800 778 802 0.90 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 1 22 0.004 4 7.6 0.2 3 19 192 209 191 211 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 2 22 0.012 12 6.0 1.1 3 12 220 229 218 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 3 22 0.011 11 6.1 0.1 3 12 248 257 246 264 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 4 22 0.016 16 5.7 0.3 3 12 276 285 274 286 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 5 22 0.014 14 5.9 0.1 3 12 304 313 302 319 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 6 22 0.28 2.8e+02 1.7 0.1 3 11 332 340 330 344 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 7 22 0.0016 1.6 8.9 0.1 3 19 360 377 358 378 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 8 22 0.029 29 4.8 0.5 3 11 388 396 386 397 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 9 22 0.02 20 5.3 0.1 3 11 416 424 414 427 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 10 22 0.027 26 4.9 0.8 3 11 444 452 442 456 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 11 22 0.0043 4.3 7.5 0.1 3 15 472 484 470 490 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 12 22 0.042 42 4.3 0.1 3 11 500 508 498 511 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 13 22 0.0048 4.8 7.3 0.2 3 14 528 539 526 540 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 14 22 0.0088 8.7 6.5 0.1 3 15 556 568 555 576 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 15 22 0.05 50 4.1 0.2 3 11 584 592 582 595 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 16 22 0.0046 4.6 7.4 0.0 3 14 612 623 610 629 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 17 22 0.01 9.9 6.3 0.1 3 15 640 652 638 657 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 18 22 0.024 24 5.1 0.2 3 15 668 680 666 683 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 19 22 0.0031 3.1 7.9 0.1 3 15 696 708 694 717 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 20 22 0.19 1.9e+02 2.2 0.1 4 11 725 732 722 735 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 21 22 0.0094 9.3 6.4 0.1 3 12 752 761 750 769 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF546-207 - 810 7.8e-20 70.6 97.1 22 22 0.0086 8.6 6.5 0.1 3 14 780 791 778 792 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 1 13 0.028 28 5.5 2.8 31 74 184 227 180 233 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 2 13 0.0016 1.6 9.6 0.4 36 75 245 284 236 289 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 3 13 0.0083 8.3 7.2 0.9 36 75 301 340 292 347 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 4 13 0.0024 2.4 8.9 1.5 35 76 356 397 346 405 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 5 13 0.00052 0.51 11.1 2.1 32 75 409 452 404 458 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 6 13 0.0021 2.1 9.1 0.8 35 74 468 507 457 514 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 7 13 0.0085 8.5 7.2 7.0 29 81 490 542 471 545 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 8 13 0.0039 3.9 8.3 4.1 35 79 524 568 516 573 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 9 13 4e-05 0.04 14.7 1.6 25 77 542 594 541 601 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 10 13 0.0005 0.5 11.2 1.1 29 75 574 620 568 627 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 11 13 0.0011 1.1 10.0 1.7 31 77 632 678 625 683 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 12 13 0.001 1 10.2 0.3 35 75 692 732 685 738 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF546-207 - 810 9.4e-12 45.5 91.9 13 13 0.00048 0.48 11.2 1.2 35 75 748 788 742 793 0.85 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 1 22 0.087 87 2.8 0.2 2 12 190 200 189 209 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 2 22 0.61 6.1e+02 0.1 1.4 3 12 219 228 217 230 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 3 22 0.0016 1.6 8.4 0.8 3 21 247 266 245 266 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 4 22 0.014 14 5.3 0.1 3 14 275 286 273 294 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 5 22 0.00018 0.17 11.5 0.4 3 21 303 322 301 322 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 6 22 0.25 2.5e+02 1.4 0.3 3 15 331 343 329 350 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 7 22 0.02 20 4.9 0.1 3 14 359 370 357 378 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 8 22 0.00085 0.85 9.3 0.3 3 20 387 405 385 406 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 9 22 0.055 55 3.5 0.3 3 20 415 433 413 434 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 10 22 0.038 38 4.0 0.4 3 13 443 453 441 462 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 11 22 0.0049 4.9 6.8 0.4 3 19 471 488 470 489 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 12 22 0.023 23 4.7 0.1 3 20 499 517 497 518 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 13 22 0.002 2 8.1 0.5 3 21 527 546 525 546 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 14 22 0.0015 1.5 8.5 0.1 1 18 553 571 553 573 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 15 22 0.011 11 5.7 0.3 3 20 583 601 581 602 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 16 22 0.016 16 5.2 0.4 3 20 611 629 609 630 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 17 22 0.0051 5 6.8 1.4 3 20 639 657 637 658 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 18 22 0.19 1.9e+02 1.8 0.3 3 14 667 678 665 686 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 19 22 0.0096 9.6 5.9 0.3 3 14 695 706 694 713 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 20 22 0.072 72 3.1 0.1 3 17 723 738 721 742 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 21 22 0.00094 0.93 9.1 0.2 3 20 751 769 749 770 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF546-207 - 810 2.1e-11 43.2 121.7 22 22 0.0061 6.1 6.5 0.1 3 16 779 793 777 798 0.78 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 1 22 0.062 62 3.6 1.3 35 46 192 203 185 205 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 2 22 0.37 3.7e+02 1.1 0.7 4 14 218 228 216 230 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 3 22 0.13 1.3e+02 2.6 0.1 4 14 246 256 243 258 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 4 22 0.11 1.1e+02 2.8 0.2 3 14 273 284 273 285 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 5 22 0.14 1.4e+02 2.5 0.1 4 14 302 312 300 314 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 6 22 0.26 2.6e+02 1.6 0.1 4 14 330 340 328 342 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 7 22 0.086 85 3.2 0.1 3 14 357 368 356 372 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 8 22 0.00092 0.92 9.5 0.0 3 19 385 401 383 407 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 9 22 0.084 84 3.2 0.1 3 14 413 424 410 427 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 10 22 0.029 29 4.6 0.7 3 15 441 453 439 454 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 11 22 0.11 1.1e+02 2.9 0.2 4 14 470 480 468 481 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 12 22 0.071 71 3.4 0.0 3 14 497 508 495 510 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 13 22 0.0056 5.5 7.0 0.1 3 17 525 539 524 541 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 14 22 0.08 80 3.2 0.1 3 14 553 564 551 565 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 15 22 0.0066 6.6 6.7 0.1 3 17 581 595 579 604 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 16 22 0.015 15 5.6 0.1 3 15 609 621 607 625 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 17 22 0.11 1.1e+02 2.8 0.2 3 14 637 648 635 649 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 18 22 0.02 20 5.2 0.2 3 15 665 677 663 680 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 19 22 0.14 1.4e+02 2.5 0.1 5 14 695 704 692 705 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 20 22 0.04 40 4.2 0.0 3 14 721 732 719 738 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 21 22 0.02 20 5.2 0.1 3 14 749 760 747 762 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF546-207 - 810 9.7e-09 35.0 95.4 22 22 0.0078 7.8 6.5 0.1 3 15 777 789 775 793 0.89 Probable zinc-ribbon domain zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 1 12 0.31 3.1e+02 2.0 5.0 79 122 197 239 134 242 0.65 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 2 12 0.015 15 6.3 0.3 92 125 265 297 259 298 0.84 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 3 12 0.19 1.9e+02 2.7 0.2 97 121 298 322 295 326 0.84 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 4 12 0.084 84 3.9 0.3 93 121 322 350 317 355 0.79 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 5 12 0.014 14 6.4 1.3 90 122 375 407 345 410 0.76 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 6 12 0.00055 0.55 10.9 0.2 97 123 410 436 406 439 0.89 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 7 12 0.0031 3.1 8.5 3.0 90 122 487 519 443 523 0.84 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 8 12 0.068 68 4.2 5.1 84 122 565 603 520 607 0.61 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 9 12 0.31 3.1e+02 2.0 1.7 87 122 624 659 607 662 0.71 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 10 12 0.24 2.4e+02 2.4 9.4 89 122 710 743 623 747 0.78 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 11 12 0.0034 3.4 8.3 0.1 98 122 747 771 743 774 0.89 Zinc finger C2H2-type, 3 repeats zf-C2H2_3rep PF18868.1 126 ZNF546-207 - 810 9.5e-06 26.3 83.8 12 12 0.14 1.4e+02 3.2 0.0 33 52 779 798 776 807 0.85 Zinc finger C2H2-type, 3 repeats # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:21 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 1 16 0.0032 3.6 8.2 3.1 14 25 250 261 234 262 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 2 16 2.5e-08 2.8e-05 24.4 0.2 2 25 266 289 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 3 16 7.6e-07 0.00085 19.7 0.2 2 26 294 318 293 318 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 4 16 0.00011 0.12 12.8 3.3 5 25 325 345 322 346 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 5 16 1.2e-10 1.3e-07 31.7 0.1 1 25 349 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 6 16 9.4e-09 1.1e-05 25.7 1.8 2 25 378 401 377 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 7 16 1.5e-11 1.6e-08 34.5 0.6 1 25 405 429 405 430 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 8 16 1.1e-09 1.3e-06 28.6 0.2 2 25 434 457 433 458 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 9 16 1.3e-10 1.5e-07 31.5 0.2 1 25 461 485 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 10 16 9.6e-12 1.1e-08 35.1 0.3 3 26 491 514 490 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 11 16 3.2e-10 3.6e-07 30.3 0.2 2 25 518 541 517 542 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 12 16 2.3e-11 2.5e-08 33.9 0.1 2 25 546 569 545 570 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 13 16 7.4e-12 8.3e-09 35.5 0.1 2 25 574 597 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 14 16 1.3e-09 1.5e-06 28.4 0.7 2 26 602 626 601 626 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 15 16 6.6e-12 7.4e-09 35.6 0.1 2 25 630 653 629 654 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF551-201 - 670 5.9e-113 364.7 93.4 16 16 0.0048 5.4 7.6 0.4 1 14 657 670 657 670 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 1 18 4 4.5e+03 -1.5 0.3 9 21 140 152 139 153 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 2 18 0.019 21 5.8 0.0 5 20 182 197 179 199 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 3 18 2.7 3e+03 -1.0 0.6 8 21 230 243 229 244 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 4 18 0.00022 0.24 11.9 2.2 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 5 18 9.5e-05 0.11 13.0 2.7 1 23 279 301 279 301 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 6 18 0.0012 1.3 9.6 1.4 6 23 309 329 306 329 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 7 18 7.4e-08 8.3e-05 22.8 1.7 1 23 335 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 8 18 5.6e-10 6.3e-07 29.5 1.0 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 9 18 8.6e-08 9.7e-05 22.6 3.0 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 10 18 7.1e-08 7.9e-05 22.9 2.1 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 11 18 1.4e-08 1.6e-05 25.1 1.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 12 18 1.8e-06 0.0021 18.4 0.8 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 13 18 6.8e-10 7.6e-07 29.2 0.8 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 14 18 9.8e-09 1.1e-05 25.6 0.7 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 15 18 4.5e-09 5.1e-06 26.7 0.3 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 16 18 2.4e-09 2.7e-06 27.5 0.4 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 17 18 3.8e-09 4.3e-06 26.9 1.4 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF551-201 - 670 1.2e-81 264.8 131.1 18 18 1.2e-10 1.4e-07 31.6 1.3 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 1 16 0.18 2e+02 3.3 0.0 6 22 183 199 179 201 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 2 16 4.6e-05 0.052 14.4 2.2 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 3 16 0.0015 1.7 9.7 3.1 1 23 279 301 279 302 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 4 16 1.7 1.9e+03 0.2 1.0 8 23 314 329 307 330 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 5 16 0.00015 0.17 12.8 1.4 1 23 335 357 335 358 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 6 16 4.6e-06 0.0051 17.5 1.1 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 7 16 1.9e-05 0.021 15.6 2.4 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 8 16 4.5e-07 0.00051 20.7 2.2 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 9 16 2.4e-05 0.026 15.3 0.8 1 23 447 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 10 16 6e-05 0.068 14.1 1.0 1 23 475 497 475 498 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 11 16 9.5e-07 0.0011 19.7 0.5 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 12 16 4.9e-06 0.0055 17.4 0.6 1 23 531 553 531 554 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 13 16 2.7e-06 0.0031 18.2 0.5 1 23 559 581 559 582 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 14 16 2.2e-06 0.0025 18.5 0.6 1 23 587 609 587 610 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 15 16 5.5e-06 0.0061 17.3 1.2 1 23 615 637 615 638 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF551-201 - 670 1.1e-47 156.5 122.8 16 16 4.1e-07 0.00046 20.8 1.0 1 23 643 665 643 666 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 1 14 0.015 17 5.5 0.9 2 11 251 260 250 261 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 2 14 0.0028 3.1 7.9 2.3 2 13 279 290 278 301 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 3 14 8.3e-05 0.093 12.8 1.4 1 24 334 357 334 360 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 4 14 0.00084 0.94 9.6 1.6 2 24 363 385 363 388 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 5 14 0.00015 0.17 11.9 1.2 2 24 391 413 391 416 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 6 14 0.022 24 5.1 1.9 2 12 419 429 419 443 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 7 14 5.6e-06 0.0063 16.5 0.6 2 24 447 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 8 14 0.00091 1 9.4 2.3 2 12 475 485 475 486 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 9 14 2.2e-06 0.0025 17.8 0.5 2 24 503 525 503 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 10 14 8.5e-06 0.0095 15.9 0.7 2 24 531 553 531 556 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 11 14 1.4e-05 0.015 15.3 0.8 2 24 559 581 559 584 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 12 14 1.7e-05 0.019 14.9 1.5 2 24 587 609 587 612 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 13 14 0.0039 4.4 7.4 0.7 2 13 615 626 615 639 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF551-201 - 670 1.7e-29 101.2 107.8 14 14 6.4e-07 0.00071 19.5 0.8 2 24 643 665 643 668 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF551-201 - 670 1.4e-23 82.3 0.5 1 1 2.2e-26 2.5e-23 81.5 0.5 2 42 29 69 28 69 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 1 15 0.32 3.6e+02 0.9 0.0 8 21 183 197 182 197 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 2 15 0.069 77 3.0 0.6 3 15 251 263 249 270 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 3 15 0.14 1.6e+02 2.0 1.8 2 13 278 289 277 293 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 4 15 0.1 1.1e+02 2.5 0.5 4 21 336 354 334 354 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 5 15 0.019 21 4.8 0.1 3 15 363 375 361 382 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 6 15 0.26 3e+02 1.1 1.7 3 12 391 400 389 403 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 7 15 0.00045 0.5 10.0 1.3 3 21 419 438 418 438 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 8 15 0.037 41 3.9 0.1 3 13 447 457 445 465 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 9 15 0.018 20 4.9 0.3 3 14 475 486 473 494 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 10 15 0.0025 2.8 7.6 0.2 3 20 503 521 501 522 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 11 15 0.0061 6.8 6.4 0.1 3 12 531 540 529 549 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 12 15 0.00018 0.2 11.3 0.2 3 21 559 578 557 578 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 13 15 0.00019 0.22 11.2 0.3 3 21 587 606 585 606 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 14 15 0.0017 1.9 8.2 0.5 3 21 615 634 613 634 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF551-201 - 670 1.3e-08 34.2 81.3 15 15 0.003 3.3 7.4 0.1 3 13 643 653 641 661 0.88 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 1 12 4.5 5e+03 -2.3 11.5 6 37 251 289 250 292 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 2 12 0.54 6e+02 0.7 3.3 6 22 279 300 278 311 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 3 12 0.028 32 4.8 4.9 7 37 336 373 334 374 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 4 12 0.00056 0.63 10.2 6.6 6 39 363 403 362 404 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 5 12 0.00031 0.35 11.0 7.1 6 37 419 457 417 459 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 6 12 0.0014 1.5 9.0 6.9 6 39 447 487 446 488 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 7 12 0.00099 1.1 9.4 6.3 6 38 475 514 474 516 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 8 12 0.00041 0.46 10.7 6.1 6 38 503 542 502 544 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 9 12 0.0065 7.3 6.8 0.7 6 18 531 543 530 553 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 10 12 0.00039 0.44 10.7 5.9 6 34 559 594 558 598 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 11 12 0.0038 4.3 7.5 0.6 6 18 587 599 586 610 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF551-201 - 670 4.3e-06 26.7 94.0 12 12 2.7e-05 0.03 14.4 4.2 6 38 615 654 614 656 0.90 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:21 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF551-202 - 74 4.2e-25 87.1 0.5 1 1 3e-29 5.4e-25 86.8 0.5 2 42 29 69 28 69 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF551-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-202.Pfam32 --tblout 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--------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-205.Pfam32 --tblout 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--------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-208.Pfam32 --tblout 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--------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 1 33 0.00016 0.29 11.7 1.1 2 23 9 31 8 31 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 2 33 5.5e-07 0.00098 19.5 2.0 1 23 48 70 48 70 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 3 33 1.1e-08 2e-05 24.8 0.7 1 23 75 97 75 97 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 4 33 9.7e-07 0.0017 18.7 3.0 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 5 33 7.9e-05 0.14 12.6 0.4 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 6 33 2.3e-05 0.041 14.3 2.6 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 7 33 4.3e-07 0.00078 19.8 1.5 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 8 33 0.0009 1.6 9.3 0.5 1 23 401 423 401 424 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 9 33 1.7e-05 0.03 14.8 4.0 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 10 33 1.2e-05 0.022 15.2 0.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 11 33 0.00025 0.45 11.1 0.1 1 23 575 597 575 597 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 12 33 6.4e-07 0.0012 19.2 1.9 1 23 617 639 617 639 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 13 33 0.011 19 6.0 3.2 1 23 644 666 644 666 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 14 33 0.00014 0.25 11.9 1.8 1 20 821 840 821 840 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 15 33 8.3e-05 0.15 12.6 0.4 1 23 848 870 848 870 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 16 33 0.007 13 6.5 0.7 2 23 882 904 881 904 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 17 33 0.025 44 4.8 1.1 2 21 959 978 958 979 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 18 33 1.2e-05 0.021 15.3 2.0 1 23 1052 1074 1052 1074 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 19 33 4.3e-05 0.077 13.5 1.4 2 23 1080 1101 1079 1101 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 20 33 1.3e-06 0.0024 18.2 1.0 1 23 1203 1225 1203 1225 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 21 33 0.00016 0.28 11.7 0.8 3 23 1232 1252 1230 1252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 22 33 3.4e-07 0.00062 20.1 0.8 1 23 1258 1280 1258 1280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 23 33 2e-06 0.0036 17.7 2.2 1 23 1299 1321 1299 1321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 24 33 7.4e-07 0.0013 19.0 1.0 1 23 1326 1348 1326 1348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 25 33 1e-06 0.0018 18.6 0.1 2 23 1365 1386 1364 1386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 26 33 6.6 1.2e+04 -2.9 0.1 3 15 1498 1512 1497 1513 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 27 33 0.0016 2.8 8.6 1.6 2 19 1532 1549 1531 1551 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 28 33 4.9 8.7e+03 -2.4 2.3 1 21 1557 1577 1557 1579 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 29 33 1.7e-06 0.0031 17.9 0.1 1 23 1585 1607 1585 1607 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 30 33 3.3e-06 0.0059 17.0 1.7 1 23 1677 1699 1677 1699 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 31 33 0.0022 4 8.1 0.4 1 23 1704 1726 1704 1726 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 32 33 6.9e-05 0.12 12.8 1.0 1 23 1732 1754 1732 1754 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-201 - 1832 5.2e-85 275.4 262.0 33 33 4e-05 0.071 13.6 5.8 1 23 1761 1783 1761 1783 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 1 32 0.00053 0.95 10.5 1.3 2 24 9 31 8 31 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 2 32 5.7e-05 0.1 13.5 0.8 1 23 48 70 48 71 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 3 32 3e-07 0.00054 20.6 0.3 1 23 75 97 75 98 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 4 32 6e-05 0.11 13.4 2.0 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 5 32 4e-05 0.072 14.0 0.3 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 6 32 4.3e-05 0.077 13.9 2.1 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 7 32 0.00019 0.35 11.8 0.7 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 8 32 4.1e-06 0.0073 17.1 0.8 1 24 401 424 401 424 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 9 32 0.0025 4.5 8.4 3.1 1 23 465 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 10 32 9.7e-06 0.017 15.9 0.4 1 23 492 514 492 514 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 11 32 0.0062 11 7.2 0.1 1 19 575 593 575 597 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 12 32 0.00015 0.27 12.2 1.1 1 23 617 639 617 640 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 13 32 0.00065 1.2 10.2 2.7 1 23 644 666 644 667 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 14 32 0.1 1.8e+02 3.4 1.3 1 19 821 839 821 841 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 15 32 5e-06 0.009 16.8 0.6 1 23 848 870 848 871 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 16 32 0.0097 17 6.5 0.6 1 24 881 904 881 904 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 17 32 0.0038 6.8 7.8 1.3 1 21 958 978 958 981 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 18 32 0.0003 0.54 11.2 1.1 1 23 1052 1074 1052 1075 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 19 32 1.1e-05 0.02 15.7 1.0 1 23 1079 1101 1079 1102 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 20 32 0.00014 0.25 12.3 0.9 1 23 1203 1225 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 21 32 0.00015 0.27 12.2 0.3 2 23 1231 1252 1230 1253 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 22 32 0.00014 0.24 12.3 0.8 1 23 1258 1280 1258 1281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 23 32 5.6e-05 0.1 13.5 1.0 1 23 1299 1321 1299 1322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 24 32 3.3e-05 0.059 14.2 0.7 1 23 1326 1348 1326 1349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 25 32 3.3e-05 0.059 14.2 0.1 2 23 1365 1386 1364 1387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 26 32 0.0029 5.2 8.2 2.0 3 19 1533 1549 1531 1549 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 27 32 0.14 2.5e+02 2.9 2.0 1 23 1557 1579 1557 1580 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 28 32 2.8e-06 0.005 17.6 0.2 1 23 1585 1607 1585 1608 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 29 32 1.6e-05 0.029 15.2 1.3 1 23 1677 1699 1677 1700 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 30 32 0.00047 0.84 10.6 0.4 1 23 1704 1726 1704 1727 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 31 32 0.0021 3.8 8.6 1.1 1 19 1732 1750 1732 1754 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-201 - 1832 1e-68 222.0 242.6 32 32 0.0016 2.8 9.0 4.6 1 23 1761 1783 1761 1784 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 1 29 0.66 1.2e+03 -0.0 0.0 3 13 9 19 7 20 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 2 29 0.0057 10 6.5 0.0 2 24 48 70 47 71 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 3 29 3.9e-06 0.007 16.6 0.0 2 24 75 97 74 98 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 4 29 0.00099 1.8 9.0 1.8 2 24 239 261 238 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 5 29 0.017 30 5.1 0.2 2 20 266 284 265 285 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 6 29 0.023 42 4.6 0.0 4 24 296 316 293 317 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 7 29 0.0019 3.4 8.1 0.0 2 25 374 397 373 397 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 8 29 0.00023 0.42 11.0 0.1 2 22 401 421 400 421 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 9 29 0.025 45 4.5 0.2 2 24 465 487 464 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 10 29 0.012 22 5.5 0.0 4 22 494 512 491 512 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 11 29 0.081 1.5e+02 2.9 0.0 2 20 575 593 574 593 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 12 29 0.11 2.1e+02 2.4 0.3 2 25 617 640 616 640 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 13 29 7.2e-07 0.0013 19.0 0.4 2 22 644 664 643 664 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 14 29 0.046 83 3.6 0.1 4 22 850 868 847 871 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 15 29 4.5 8e+03 -2.7 0.0 4 20 883 899 881 901 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 16 29 0.11 1.9e+02 2.5 0.0 2 22 1052 1072 1051 1072 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 17 29 0.023 42 4.6 0.1 4 24 1081 1101 1079 1102 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 18 29 7.1e-05 0.13 12.6 0.2 2 25 1203 1226 1202 1226 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 19 29 3.2e-05 0.058 13.7 0.2 4 21 1232 1249 1229 1250 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 20 29 0.16 2.9e+02 1.9 0.1 2 21 1258 1277 1257 1278 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 21 29 0.0036 6.5 7.2 0.0 2 24 1299 1321 1298 1322 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 22 29 1.8e-05 0.033 14.5 0.1 1 22 1325 1346 1325 1346 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 23 29 0.017 30 5.0 0.0 4 23 1366 1385 1364 1386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 24 29 0.00061 1.1 9.6 0.2 2 14 1557 1569 1556 1575 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 25 29 0.0016 2.8 8.3 0.1 2 21 1585 1604 1584 1605 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 26 29 0.014 25 5.3 0.0 2 22 1677 1697 1676 1697 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 27 29 0.85 1.5e+03 -0.4 0.0 4 20 1706 1722 1704 1727 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 28 29 0.085 1.5e+02 2.8 0.2 4 20 1734 1750 1731 1750 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-201 - 1832 6.4e-45 150.6 97.9 29 29 6.9e-05 0.12 12.7 0.6 2 22 1761 1781 1760 1784 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 1 29 0.23 4e+02 1.2 0.2 4 21 10 27 9 32 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 2 29 0.0048 8.6 6.5 1.3 2 25 48 71 48 72 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 3 29 3.6e-05 0.064 13.3 0.0 2 24 75 97 74 100 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 4 29 0.001 1.8 8.6 4.8 1 24 238 261 238 262 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 5 29 0.0054 9.8 6.3 0.1 2 24 266 288 265 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 6 29 5.2 9.4e+03 -3.2 0.6 2 23 294 315 294 318 0.68 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 7 29 0.013 23 5.2 1.4 2 25 374 397 374 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 8 29 0.0094 17 5.6 0.3 1 26 400 425 400 426 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 9 29 0.025 44 4.2 4.1 2 25 465 488 465 490 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 10 29 0.1 1.8e+02 2.3 0.4 2 21 492 511 492 516 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 11 29 0.0065 12 6.1 0.1 1 12 574 585 574 597 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 12 29 0.066 1.2e+02 2.9 1.4 2 25 617 640 616 641 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 13 29 0.15 2.8e+02 1.7 2.6 2 25 644 667 643 669 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 14 29 0.0051 9.1 6.4 1.6 1 25 820 844 820 845 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 15 29 1.2e-05 0.021 14.8 0.0 2 25 848 871 847 873 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 16 29 0.00029 0.53 10.4 2.0 2 24 1052 1074 1052 1076 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 17 29 0.0046 8.2 6.6 0.1 2 25 1079 1102 1078 1103 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 18 29 0.017 30 4.7 2.0 2 25 1203 1226 1203 1227 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 19 29 0.0012 2.1 8.4 0.4 1 24 1229 1252 1229 1255 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 20 29 0.0004 0.71 9.9 0.6 1 25 1257 1281 1257 1283 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 21 29 0.014 26 5.0 2.2 2 25 1299 1322 1299 1323 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 22 29 0.73 1.3e+03 -0.5 0.1 2 12 1326 1336 1326 1349 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 23 29 0.002 3.6 7.7 0.2 3 26 1365 1388 1365 1389 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 24 29 1 1.8e+03 -0.9 3.0 4 11 1533 1540 1532 1541 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 25 29 2.4 4.4e+03 -2.1 0.9 2 11 1557 1566 1556 1566 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 26 29 5.5e-05 0.098 12.7 0.4 2 24 1585 1607 1584 1609 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 27 29 0.013 24 5.1 1.5 2 24 1677 1699 1677 1700 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 28 29 0.0066 12 6.1 0.0 2 25 1704 1727 1703 1729 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-201 - 1832 3.1e-14 52.6 199.4 29 29 1.2e-05 0.021 14.8 1.1 1 20 1731 1750 1731 1755 0.89 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 1 37 0.0043 7.6 7.1 0.1 2 25 23 58 22 59 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 2 37 0.0013 2.4 8.8 0.3 1 26 62 86 62 86 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 3 37 0.094 1.7e+02 2.9 0.6 1 12 89 100 89 110 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 4 37 0.0004 0.72 10.4 1.0 12 26 236 250 234 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 5 37 0.038 69 4.1 0.2 1 26 253 277 253 277 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 6 37 4.5e-05 0.081 13.4 4.3 1 24 280 303 280 304 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 7 37 5.8 1e+04 -2.8 0.1 4 13 311 320 309 321 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 8 37 0.45 8.1e+02 0.8 0.2 13 26 372 385 370 385 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 9 37 0.025 45 4.7 0.2 2 22 389 408 388 410 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 10 37 1.6 3e+03 -1.0 0.2 1 12 415 426 415 435 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 11 37 0.0041 7.4 7.2 0.3 13 26 463 476 448 476 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 12 37 0.0054 9.7 6.8 1.4 2 24 480 501 479 503 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 13 37 2.1 3.7e+03 -1.3 0.4 1 9 506 514 506 514 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 14 37 0.057 1e+02 3.6 0.1 11 26 613 628 589 628 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 15 37 0.28 5.1e+02 1.4 1.1 3 25 633 654 631 655 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 16 37 10 1.8e+04 -4.9 3.6 1 7 662 668 659 676 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 17 37 0.65 1.2e+03 0.2 0.1 15 24 821 830 818 832 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 18 37 0.00038 0.69 10.5 0.8 10 25 843 858 836 859 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 19 37 0.1 1.8e+02 2.8 0.2 1 21 862 887 862 890 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 20 37 0.0038 6.7 7.3 0.3 11 26 1048 1063 1046 1063 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 21 37 0.032 58 4.4 0.7 1 23 1066 1087 1066 1090 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 22 37 0.85 1.5e+03 -0.1 0.1 1 10 1093 1102 1093 1108 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 23 37 0.0025 4.5 7.9 0.2 11 26 1199 1214 1194 1214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 24 37 0.23 4.2e+02 1.7 0.3 15 26 1230 1241 1217 1241 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 25 37 2.6e-06 0.0047 17.3 0.7 1 24 1244 1267 1244 1268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 26 37 0.0078 14 6.3 0.1 2 26 1273 1310 1272 1310 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 27 37 0.00027 0.48 10.9 0.6 2 26 1314 1337 1313 1337 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 28 37 0.058 1e+02 3.6 0.1 1 24 1340 1373 1340 1373 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 29 37 0.13 2.4e+02 2.4 0.3 1 10 1378 1387 1378 1391 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 30 37 1.5 2.7e+03 -0.9 0.4 17 24 1533 1540 1531 1540 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 31 37 0.049 88 3.8 0.2 11 26 1552 1568 1547 1568 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 32 37 0.0049 8.7 7.0 0.6 8 25 1578 1595 1573 1596 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 33 37 10 1.8e+04 -3.8 0.4 1 10 1603 1612 1603 1613 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 34 37 0.013 23 5.6 0.3 11 26 1673 1688 1671 1688 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 35 37 0.069 1.2e+02 3.3 0.3 4 22 1694 1711 1691 1712 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 36 37 7.7e-08 0.00014 22.1 4.2 1 25 1718 1742 1718 1743 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-201 - 1832 2.5e-11 43.4 230.6 37 37 0.0021 3.7 8.1 1.2 7 25 1752 1771 1747 1772 0.76 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 1 33 0.00016 0.29 11.7 1.1 2 23 9 31 8 31 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 2 33 5.5e-07 0.00098 19.5 2.0 1 23 48 70 48 70 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 3 33 1.1e-08 2e-05 24.8 0.7 1 23 75 97 75 97 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 4 33 9.7e-07 0.0017 18.7 3.0 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 5 33 7.9e-05 0.14 12.7 0.4 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 6 33 2.3e-05 0.041 14.3 2.6 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 7 33 4.3e-07 0.00078 19.8 1.5 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 8 33 0.0009 1.6 9.3 0.5 1 23 401 423 401 424 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 9 33 1.7e-05 0.03 14.8 4.0 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 10 33 1.2e-05 0.022 15.2 0.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 11 33 0.00025 0.44 11.1 0.1 1 23 575 597 575 597 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 12 33 6.4e-07 0.0011 19.2 1.9 1 23 617 639 617 639 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 13 33 0.011 19 6.0 3.2 1 23 644 666 644 666 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 14 33 0.00014 0.25 11.9 1.8 1 20 821 840 821 840 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 15 33 8.3e-05 0.15 12.6 0.4 1 23 848 870 848 870 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 16 33 0.007 13 6.5 0.7 2 23 882 904 881 904 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 17 33 0.024 44 4.8 1.1 2 21 959 978 958 979 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 18 33 1.2e-05 0.021 15.3 2.0 1 23 1052 1074 1052 1074 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 19 33 4.3e-05 0.077 13.5 1.4 2 23 1080 1101 1079 1101 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 20 33 1.3e-06 0.0024 18.2 1.0 1 23 1203 1225 1203 1225 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 21 33 0.00016 0.28 11.7 0.8 3 23 1232 1252 1230 1252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 22 33 3.4e-07 0.00062 20.1 0.8 1 23 1258 1280 1258 1280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 23 33 2e-06 0.0036 17.7 2.2 1 23 1299 1321 1299 1321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 24 33 7.4e-07 0.0013 19.0 1.0 1 23 1326 1348 1326 1348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 25 33 1e-06 0.0018 18.6 0.1 2 23 1365 1386 1364 1386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 26 33 6.6 1.2e+04 -2.9 0.1 3 15 1498 1512 1497 1513 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 27 33 0.0016 2.8 8.6 1.6 2 19 1532 1549 1531 1551 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 28 33 4.9 8.7e+03 -2.4 2.3 1 21 1557 1577 1557 1579 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 29 33 1.7e-06 0.0031 17.9 0.1 1 23 1585 1607 1585 1607 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 30 33 3.3e-06 0.0059 17.0 1.7 1 23 1677 1699 1677 1699 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 31 33 0.0022 4 8.1 0.4 1 23 1704 1726 1704 1726 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 32 33 6.9e-05 0.12 12.8 1.0 1 23 1732 1754 1732 1754 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF646-202 - 1829 4.9e-85 275.5 262.0 33 33 4e-05 0.071 13.6 5.8 1 23 1761 1783 1761 1783 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 1 32 0.00053 0.95 10.5 1.3 2 24 9 31 8 31 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 2 32 5.7e-05 0.1 13.5 0.8 1 23 48 70 48 71 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 3 32 3e-07 0.00054 20.6 0.3 1 23 75 97 75 98 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 4 32 6e-05 0.11 13.4 2.0 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 5 32 4e-05 0.072 14.0 0.3 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 6 32 4.3e-05 0.076 13.9 2.1 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 7 32 0.00019 0.35 11.8 0.7 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 8 32 4.1e-06 0.0073 17.1 0.8 1 24 401 424 401 424 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 9 32 0.0025 4.5 8.4 3.1 1 23 465 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 10 32 9.7e-06 0.017 15.9 0.4 1 23 492 514 492 514 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 11 32 0.0061 11 7.2 0.1 1 19 575 593 575 597 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 12 32 0.00015 0.27 12.2 1.1 1 23 617 639 617 640 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 13 32 0.00065 1.2 10.2 2.7 1 23 644 666 644 667 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 14 32 0.1 1.8e+02 3.4 1.3 1 19 821 839 821 841 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 15 32 5e-06 0.009 16.8 0.6 1 23 848 870 848 871 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 16 32 0.0097 17 6.6 0.6 1 24 881 904 881 904 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 17 32 0.0038 6.8 7.8 1.3 1 21 958 978 958 981 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 18 32 0.0003 0.54 11.2 1.1 1 23 1052 1074 1052 1075 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 19 32 1.1e-05 0.02 15.7 1.0 1 23 1079 1101 1079 1102 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 20 32 0.00014 0.25 12.3 0.9 1 23 1203 1225 1203 1226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 21 32 0.00015 0.27 12.2 0.3 2 23 1231 1252 1230 1253 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 22 32 0.00014 0.24 12.3 0.8 1 23 1258 1280 1258 1281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 23 32 5.6e-05 0.1 13.5 1.0 1 23 1299 1321 1299 1322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 24 32 3.3e-05 0.059 14.2 0.7 1 23 1326 1348 1326 1349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 25 32 3.3e-05 0.059 14.2 0.1 2 23 1365 1386 1364 1387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 26 32 0.0029 5.1 8.2 2.0 3 19 1533 1549 1531 1549 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 27 32 0.14 2.5e+02 3.0 2.0 1 23 1557 1579 1557 1580 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 28 32 2.8e-06 0.005 17.6 0.2 1 23 1585 1607 1585 1608 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 29 32 1.6e-05 0.029 15.2 1.3 1 23 1677 1699 1677 1700 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 30 32 0.00047 0.84 10.6 0.4 1 23 1704 1726 1704 1727 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 31 32 0.0021 3.8 8.6 1.1 1 19 1732 1750 1732 1754 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF646-202 - 1829 9.5e-69 222.1 242.6 32 32 0.0015 2.8 9.0 4.6 1 23 1761 1783 1761 1784 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 1 29 0.66 1.2e+03 -0.0 0.0 3 13 9 19 7 20 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 2 29 0.0057 10 6.5 0.0 2 24 48 70 47 71 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 3 29 3.9e-06 0.007 16.6 0.0 2 24 75 97 74 98 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 4 29 0.00099 1.8 9.0 1.8 2 24 239 261 238 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 5 29 0.016 30 5.1 0.2 2 20 266 284 265 285 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 6 29 0.023 42 4.6 0.0 4 24 296 316 293 317 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 7 29 0.0019 3.4 8.1 0.0 2 25 374 397 373 397 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 8 29 0.00023 0.41 11.0 0.1 2 22 401 421 400 421 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 9 29 0.025 45 4.5 0.2 2 24 465 487 464 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 10 29 0.012 22 5.5 0.0 4 22 494 512 491 512 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 11 29 0.081 1.4e+02 2.9 0.0 2 20 575 593 574 593 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 12 29 0.11 2.1e+02 2.4 0.3 2 25 617 640 616 640 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 13 29 7.2e-07 0.0013 19.0 0.4 2 22 644 664 643 664 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 14 29 0.046 83 3.6 0.1 4 22 850 868 847 871 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 15 29 4.5 8e+03 -2.7 0.0 4 20 883 899 881 901 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 16 29 0.1 1.9e+02 2.5 0.0 2 22 1052 1072 1051 1072 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 17 29 0.023 42 4.6 0.1 4 24 1081 1101 1079 1102 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 18 29 7.1e-05 0.13 12.6 0.2 2 25 1203 1226 1202 1226 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 19 29 3.2e-05 0.058 13.7 0.2 4 21 1232 1249 1229 1250 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 20 29 0.16 2.9e+02 1.9 0.1 2 21 1258 1277 1257 1278 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 21 29 0.0036 6.5 7.2 0.0 2 24 1299 1321 1298 1322 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 22 29 1.8e-05 0.033 14.5 0.1 1 22 1325 1346 1325 1346 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 23 29 0.017 30 5.0 0.0 4 23 1366 1385 1364 1386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 24 29 0.00061 1.1 9.6 0.2 2 14 1557 1569 1556 1575 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 25 29 0.0015 2.8 8.3 0.1 2 21 1585 1604 1584 1605 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 26 29 0.014 25 5.3 0.0 2 22 1677 1697 1676 1697 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 27 29 0.85 1.5e+03 -0.4 0.0 4 20 1706 1722 1704 1727 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 28 29 0.084 1.5e+02 2.8 0.2 4 20 1734 1750 1731 1750 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF646-202 - 1829 6.1e-45 150.7 97.9 29 29 6.9e-05 0.12 12.7 0.6 2 22 1761 1781 1760 1784 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 1 29 0.23 4e+02 1.2 0.2 4 21 10 27 9 32 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 2 29 0.0048 8.6 6.5 1.3 2 25 48 71 48 72 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 3 29 3.6e-05 0.064 13.3 0.0 2 24 75 97 74 100 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 4 29 0.001 1.8 8.6 4.8 1 24 238 261 238 262 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 5 29 0.0054 9.7 6.3 0.1 2 24 266 288 265 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 6 29 5.2 9.4e+03 -3.2 0.6 2 23 294 315 294 318 0.68 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 7 29 0.013 23 5.2 1.4 2 25 374 397 374 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 8 29 0.0094 17 5.6 0.3 1 26 400 425 400 426 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 9 29 0.025 44 4.2 4.1 2 25 465 488 465 490 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 10 29 0.1 1.8e+02 2.3 0.4 2 21 492 511 492 516 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 11 29 0.0064 12 6.1 0.1 1 12 574 585 574 597 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 12 29 0.065 1.2e+02 2.9 1.4 2 25 617 640 616 641 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 13 29 0.15 2.8e+02 1.7 2.6 2 25 644 667 643 669 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 14 29 0.0051 9.1 6.4 1.6 1 25 820 844 820 845 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 15 29 1.2e-05 0.021 14.8 0.0 2 25 848 871 847 873 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 16 29 0.00029 0.53 10.4 2.0 2 24 1052 1074 1052 1076 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 17 29 0.0046 8.2 6.6 0.1 2 25 1079 1102 1078 1103 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 18 29 0.017 30 4.7 2.0 2 25 1203 1226 1203 1227 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 19 29 0.0012 2.1 8.4 0.4 1 24 1229 1252 1229 1255 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 20 29 0.00039 0.71 9.9 0.6 1 25 1257 1281 1257 1283 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 21 29 0.014 26 5.0 2.2 2 25 1299 1322 1299 1323 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 22 29 0.73 1.3e+03 -0.5 0.1 2 12 1326 1336 1326 1349 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 23 29 0.002 3.6 7.7 0.2 3 26 1365 1388 1365 1389 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 24 29 1 1.8e+03 -0.9 3.0 4 11 1533 1540 1532 1541 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 25 29 2.4 4.4e+03 -2.1 0.9 2 11 1557 1566 1556 1566 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 26 29 5.4e-05 0.098 12.7 0.4 2 24 1585 1607 1584 1609 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 27 29 0.013 24 5.1 1.5 2 24 1677 1699 1677 1700 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 28 29 0.0066 12 6.1 0.0 2 25 1704 1727 1703 1729 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF646-202 - 1829 2.9e-14 52.6 199.4 29 29 1.2e-05 0.021 14.8 1.1 1 20 1731 1750 1731 1755 0.89 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 1 37 0.0043 7.6 7.2 0.1 2 25 23 58 22 59 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 2 37 0.0013 2.4 8.8 0.3 1 26 62 86 62 86 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 3 37 0.094 1.7e+02 2.9 0.6 1 12 89 100 89 110 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 4 37 0.0004 0.72 10.4 1.0 12 26 236 250 234 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 5 37 0.038 69 4.1 0.2 1 26 253 277 253 277 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 6 37 4.5e-05 0.081 13.4 4.3 1 24 280 303 280 304 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 7 37 5.8 1e+04 -2.8 0.1 4 13 311 320 309 321 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 8 37 0.45 8.1e+02 0.8 0.2 13 26 372 385 370 385 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 9 37 0.025 45 4.7 0.2 2 22 389 408 388 410 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 10 37 1.6 2.9e+03 -1.0 0.2 1 12 415 426 415 435 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 11 37 0.0041 7.4 7.2 0.3 13 26 463 476 448 476 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 12 37 0.0054 9.7 6.8 1.4 2 24 480 501 479 503 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 13 37 2.1 3.7e+03 -1.3 0.4 1 9 506 514 506 514 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 14 37 0.056 1e+02 3.6 0.1 11 26 613 628 589 628 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 15 37 0.28 5.1e+02 1.4 1.1 3 25 633 654 631 655 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 16 37 10 1.8e+04 -4.9 3.6 1 7 662 668 659 676 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 17 37 0.65 1.2e+03 0.3 0.1 15 24 821 830 818 832 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 18 37 0.00038 0.68 10.5 0.8 10 25 843 858 836 859 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 19 37 0.1 1.8e+02 2.8 0.2 1 21 862 887 862 890 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 20 37 0.0037 6.7 7.3 0.3 11 26 1048 1063 1046 1063 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 21 37 0.032 58 4.4 0.7 1 23 1066 1087 1066 1090 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 22 37 0.84 1.5e+03 -0.1 0.1 1 10 1093 1102 1093 1108 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 23 37 0.0025 4.4 7.9 0.2 11 26 1199 1214 1194 1214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 24 37 0.23 4.2e+02 1.7 0.3 15 26 1230 1241 1217 1241 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 25 37 2.6e-06 0.0047 17.3 0.7 1 24 1244 1267 1244 1268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 26 37 0.0078 14 6.3 0.1 2 26 1273 1310 1272 1310 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 27 37 0.00027 0.48 10.9 0.6 2 26 1314 1337 1313 1337 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 28 37 0.058 1e+02 3.6 0.1 1 24 1340 1373 1340 1373 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 29 37 0.13 2.4e+02 2.4 0.3 1 10 1378 1387 1378 1391 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 30 37 1.5 2.7e+03 -0.9 0.4 17 24 1533 1540 1531 1540 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 31 37 0.049 88 3.8 0.2 11 26 1552 1568 1547 1568 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 32 37 0.0049 8.7 7.0 0.6 8 25 1578 1595 1573 1596 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 33 37 10 1.8e+04 -3.8 0.4 1 10 1603 1612 1603 1613 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 34 37 0.013 23 5.6 0.3 11 26 1673 1688 1671 1688 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 35 37 0.069 1.2e+02 3.3 0.3 4 22 1694 1711 1691 1712 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 36 37 7.6e-08 0.00014 22.2 4.2 1 25 1718 1742 1718 1743 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF646-202 - 1829 2.4e-11 43.5 230.6 37 37 0.0021 3.7 8.1 1.2 7 25 1752 1771 1747 1772 0.76 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 1 11 3e-06 0.0049 17.2 1.2 4 25 167 188 165 189 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 2 11 2.3e-10 3.8e-07 30.2 2.3 2 24 193 215 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 3 11 2.1e-07 0.00034 20.9 1.5 2 24 221 243 220 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 4 11 9.6e-08 0.00016 22.0 0.7 2 24 249 271 248 273 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 5 11 4.5e-10 7.3e-07 29.3 0.3 2 25 277 300 276 301 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 6 11 6.7e-11 1.1e-07 31.9 0.5 2 24 305 327 305 329 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 7 11 3.9e-10 6.4e-07 29.5 0.1 1 25 332 356 332 357 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 8 11 6e-09 9.8e-06 25.8 0.3 2 21 361 380 361 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 9 11 1.6e-11 2.7e-08 33.9 0.2 2 26 389 413 388 413 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 10 11 4.7e-07 0.00076 19.8 1.0 4 24 419 439 416 441 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 11 11 0.094 1.5e+02 3.0 0.3 2 13 445 456 445 462 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 1 11 0.017 28 5.4 0.5 8 23 157 172 156 172 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 2 11 2.3e-06 0.0037 17.6 1.5 1 23 178 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 3 11 1.3e-05 0.021 15.3 1.7 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 4 11 8.7e-05 0.14 12.7 0.7 3 23 236 256 236 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 5 11 8.4e-09 1.4e-05 25.3 0.2 3 23 264 284 262 284 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 6 11 7.3e-10 1.2e-06 28.6 1.5 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 7 11 1.1e-08 1.8e-05 25.0 0.8 1 23 318 340 318 340 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 8 11 8.4e-07 0.0014 19.0 0.6 5 23 350 368 346 368 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 9 11 3.9e-08 6.4e-05 23.2 0.4 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 10 11 1.2e-07 0.0002 21.6 2.1 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 11 11 0.00064 1 9.9 1.5 3 23 432 452 430 452 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF649-201 - 505 5.5e-25 86.7 0.9 1 1 5.8e-28 9.5e-25 86.0 0.9 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 1 11 0.21 3.4e+02 2.5 0.2 11 23 160 172 156 173 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 2 11 0.00014 0.22 12.4 1.2 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 3 11 0.00019 0.31 12.0 1.8 1 23 206 228 206 229 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 4 11 0.00068 1.1 10.3 1.4 3 23 236 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 5 11 3.5e-05 0.057 14.3 0.2 2 23 263 284 262 285 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 6 11 5.5e-06 0.009 16.8 1.6 1 23 290 312 290 313 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 7 11 4e-05 0.066 14.1 0.5 1 23 318 340 318 341 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 8 11 0.00027 0.44 11.5 1.0 2 23 347 368 346 369 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 9 11 3.8e-06 0.0063 17.3 0.7 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 10 11 4.9e-06 0.008 16.9 1.3 1 23 402 424 402 425 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 11 11 0.009 15 6.8 1.8 2 23 431 452 430 453 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 1 10 0.00099 1.6 8.8 1.6 1 24 177 200 177 203 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 2 10 7.7e-05 0.12 12.4 2.7 2 26 206 230 206 231 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 3 10 0.00081 1.3 9.1 3.0 2 26 234 258 234 259 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 4 10 3.1e-05 0.051 13.6 0.3 2 24 262 284 262 286 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 5 10 0.0018 3 7.9 0.3 2 12 290 300 290 312 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 6 10 0.002 3.3 7.8 0.6 2 24 318 340 318 343 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 7 10 2.1 3.5e+03 -1.8 0.1 3 12 347 356 346 356 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 8 10 0.35 5.7e+02 0.7 0.2 2 8 374 380 374 381 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 9 10 0.0064 10 6.2 0.9 2 24 402 424 402 427 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF649-201 - 505 1.2e-06 28.3 68.9 10 10 0.033 54 3.9 2.3 2 25 430 453 430 455 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 1 10 3.3e-06 0.0046 17.3 1.2 4 25 167 188 165 189 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 2 10 2.6e-10 3.6e-07 30.3 2.3 2 24 193 215 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 3 10 1.1e-07 0.00015 22.1 0.7 2 24 221 243 220 245 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 4 10 4.9e-10 6.8e-07 29.4 0.3 2 25 249 272 248 273 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 5 10 7.4e-11 1e-07 32.0 0.5 2 24 277 299 277 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 6 10 4.4e-10 6e-07 29.6 0.1 1 25 304 328 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 7 10 6.7e-09 9.2e-06 25.9 0.3 2 21 333 352 333 353 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 8 10 1.8e-11 2.5e-08 34.0 0.2 2 26 361 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 9 10 5.2e-07 0.00071 19.9 1.0 4 24 391 411 388 413 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 10 10 0.1 1.4e+02 3.1 0.3 2 13 417 428 417 434 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 1 10 0.019 26 5.5 0.5 8 23 157 172 156 172 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 2 10 2.5e-06 0.0035 17.7 1.5 1 23 178 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 3 10 2.3e-05 0.031 14.7 1.7 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 4 10 9.2e-09 1.3e-05 25.4 0.2 3 23 236 256 234 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 5 10 8.1e-10 1.1e-06 28.7 1.5 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 6 10 1.2e-08 1.6e-05 25.1 0.8 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 7 10 9.2e-07 0.0013 19.1 0.6 5 23 322 340 318 340 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 8 10 4.3e-08 6e-05 23.3 0.4 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 9 10 1.4e-07 0.00019 21.7 2.1 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 10 10 0.00071 0.98 10.0 1.5 3 23 404 424 402 424 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF649-207 - 477 5.2e-25 86.8 0.9 1 1 6.4e-28 8.8e-25 86.1 0.9 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 1 10 0.23 3.2e+02 2.6 0.2 11 23 160 172 156 173 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 2 10 0.00015 0.21 12.5 1.2 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 3 10 0.00037 0.51 11.3 1.8 1 23 206 228 206 229 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 4 10 3.8e-05 0.053 14.4 0.2 2 23 235 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 5 10 6.1e-06 0.0083 16.9 1.6 1 23 262 284 262 285 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 6 10 4.4e-05 0.061 14.2 0.5 1 23 290 312 290 313 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 7 10 0.00029 0.41 11.6 1.0 2 23 319 340 318 341 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 8 10 4.2e-06 0.0058 17.4 0.7 1 23 346 368 346 369 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 9 10 5.4e-06 0.0074 17.0 1.3 1 23 374 396 374 397 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 10 10 0.0099 14 6.9 1.8 2 23 403 424 402 425 0.91 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 1 9 0.00094 1.3 8.7 0.4 4 20 179 196 176 197 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 2 9 0.021 30 4.3 0.1 3 21 206 225 204 225 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 3 9 2.7e-05 0.037 13.6 0.1 3 21 234 253 232 253 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 4 9 0.03 41 3.9 0.1 3 13 262 272 260 277 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 5 9 0.013 18 5.0 0.1 3 12 290 299 288 309 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 6 9 0.3 4.2e+02 0.7 0.4 3 15 318 330 316 340 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 7 9 0.011 15 5.3 1.2 3 11 346 354 344 359 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 8 9 0.0029 4 7.1 0.1 3 14 374 385 372 390 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF649-207 - 477 8.8e-06 25.2 39.8 9 9 0.48 6.7e+02 0.0 0.3 3 10 402 409 401 411 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 1 10 0.0036 5.4 7.6 0.5 12 24 209 221 206 223 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 2 10 1.2e-11 1.9e-08 34.4 1.9 1 25 226 250 226 251 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 3 10 4.8e-08 7.2e-05 23.0 0.7 1 19 254 272 254 279 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 4 10 9.4e-06 0.014 15.8 1.6 4 25 292 313 291 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 5 10 0.1 1.6e+02 3.0 5.0 1 24 317 339 317 340 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 6 10 0.0031 4.6 7.8 0.1 2 18 345 361 344 367 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 7 10 9.9e-06 0.015 15.7 0.6 8 24 373 389 371 390 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 8 10 3.7e-10 5.5e-07 29.7 0.6 1 25 394 418 394 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 9 10 0.0011 1.6 9.3 1.9 3 26 424 447 423 447 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-201 - 491 1.9e-31 107.0 71.4 10 10 0.058 86 3.8 0.4 1 13 478 490 478 491 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 1 10 4 6e+03 -1.9 0.0 5 18 188 201 187 201 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 2 10 8.7e-09 1.3e-05 25.4 1.5 1 23 212 234 212 234 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 3 10 8.6e-09 1.3e-05 25.4 2.6 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 4 10 0.74 1.1e+03 0.4 0.3 1 23 268 297 268 297 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 5 10 3.1e-07 0.00046 20.5 3.2 1 23 303 325 303 325 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 6 10 0.002 3 8.5 8.4 2 23 331 352 330 353 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 7 10 4.1e-08 6.2e-05 23.2 1.6 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 8 10 3.6e-06 0.0054 17.1 5.3 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 9 10 4.3 6.4e+03 -2.0 0.0 9 16 444 451 437 452 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-201 - 491 3.1e-25 87.1 75.3 10 10 0.018 27 5.5 0.1 5 23 465 486 463 486 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 1 8 2.2e-06 0.0033 18.1 1.1 1 23 212 234 212 235 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 2 8 1.2e-06 0.0018 18.9 2.4 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 3 8 6.8 1e+04 -2.1 0.1 12 23 285 297 275 298 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 4 8 1.8e-05 0.027 15.3 3.3 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 5 8 0.011 17 6.6 8.5 2 24 331 353 330 353 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 6 8 3.8e-05 0.056 14.3 1.0 1 23 380 402 380 403 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 7 8 0.00073 1.1 10.3 5.0 1 23 408 430 408 431 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-201 - 491 5.5e-12 45.5 70.7 8 8 3.3 4.9e+03 -1.1 0.2 9 23 469 482 465 486 0.54 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 1 6 0.00015 0.22 11.6 0.9 2 24 212 234 211 237 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 2 6 9.4e-05 0.14 12.2 3.1 2 24 240 262 240 265 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 3 6 0.001 1.5 8.9 3.4 2 25 303 326 302 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 4 6 0.53 8e+02 0.2 0.5 3 8 331 336 331 339 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 5 6 0.002 3 7.9 1.7 2 25 380 399 380 401 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-201 - 491 6.6e-06 26.0 51.7 6 6 0.00051 0.76 9.8 5.8 1 27 407 433 407 433 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF655-202 - 181 4.5e-25 87.0 0.3 1 1 3.8e-29 6.8e-25 86.4 0.3 2 42 77 117 76 117 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 1 10 0.0036 5.4 7.6 0.5 12 24 209 221 206 223 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 2 10 1.2e-11 1.9e-08 34.4 1.9 1 25 226 250 226 251 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 3 10 4.8e-08 7.2e-05 23.0 0.7 1 19 254 272 254 279 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 4 10 9.4e-06 0.014 15.8 1.6 4 25 292 313 291 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 5 10 0.1 1.6e+02 3.0 5.0 1 24 317 339 317 340 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 6 10 0.0031 4.6 7.8 0.1 2 18 345 361 344 367 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 7 10 9.9e-06 0.015 15.7 0.6 8 24 373 389 371 390 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 8 10 3.7e-10 5.5e-07 29.7 0.6 1 25 394 418 394 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 9 10 0.0011 1.6 9.3 1.9 3 26 424 447 423 447 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-204 - 491 1.9e-31 107.0 71.4 10 10 0.058 86 3.8 0.4 1 13 478 490 478 491 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 1 10 4 6e+03 -1.9 0.0 5 18 188 201 187 201 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 2 10 8.7e-09 1.3e-05 25.4 1.5 1 23 212 234 212 234 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 3 10 8.6e-09 1.3e-05 25.4 2.6 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 4 10 0.74 1.1e+03 0.4 0.3 1 23 268 297 268 297 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 5 10 3.1e-07 0.00046 20.5 3.2 1 23 303 325 303 325 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 6 10 0.002 3 8.5 8.4 2 23 331 352 330 353 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 7 10 4.1e-08 6.2e-05 23.2 1.6 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 8 10 3.6e-06 0.0054 17.1 5.3 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 9 10 4.3 6.4e+03 -2.0 0.0 9 16 444 451 437 452 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-204 - 491 3.1e-25 87.1 75.3 10 10 0.018 27 5.5 0.1 5 23 465 486 463 486 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 1 8 2.2e-06 0.0033 18.1 1.1 1 23 212 234 212 235 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 2 8 1.2e-06 0.0018 18.9 2.4 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 3 8 6.8 1e+04 -2.1 0.1 12 23 285 297 275 298 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 4 8 1.8e-05 0.027 15.3 3.3 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 5 8 0.011 17 6.6 8.5 2 24 331 353 330 353 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 6 8 3.8e-05 0.056 14.3 1.0 1 23 380 402 380 403 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 7 8 0.00073 1.1 10.3 5.0 1 23 408 430 408 431 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-204 - 491 5.5e-12 45.5 70.7 8 8 3.3 4.9e+03 -1.1 0.2 9 23 469 482 465 486 0.54 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 1 6 0.00015 0.22 11.6 0.9 2 24 212 234 211 237 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 2 6 9.4e-05 0.14 12.2 3.1 2 24 240 262 240 265 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 3 6 0.001 1.5 8.9 3.4 2 25 303 326 302 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 4 6 0.53 8e+02 0.2 0.5 3 8 331 336 331 339 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 5 6 0.002 3 7.9 1.7 2 25 380 399 380 401 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF655-204 - 491 6.6e-06 26.0 51.7 6 6 0.00051 0.76 9.8 5.8 1 27 407 433 407 433 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF655-206 - 123 2.2e-25 88.0 0.3 1 1 1.8e-29 3.3e-25 87.5 0.3 2 42 77 117 76 117 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 1 10 0.003 3.4 8.3 0.5 12 24 46 58 43 60 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 2 10 1e-11 1.1e-08 35.1 1.9 1 25 63 87 63 88 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 3 10 3.9e-08 4.4e-05 23.7 0.7 1 19 91 109 91 116 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 4 10 7.6e-06 0.0085 16.5 1.6 4 25 129 150 128 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 5 10 0.084 94 3.7 5.0 1 24 154 176 154 177 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 6 10 0.0025 2.9 8.5 0.1 2 18 182 198 181 204 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 7 10 8.2e-06 0.0092 16.4 0.6 8 24 210 226 208 227 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 8 10 3e-10 3.3e-07 30.4 0.6 1 25 231 255 231 256 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 9 10 0.00088 0.98 10.0 1.9 3 26 261 284 260 284 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-207 - 328 1.7e-33 113.5 71.4 10 10 0.048 54 4.5 0.4 1 13 315 327 315 328 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 1 10 3.3 3.7e+03 -1.3 0.0 5 18 25 38 24 38 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 2 10 7e-09 7.9e-06 26.1 1.5 1 23 49 71 49 71 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 3 10 6.9e-09 7.8e-06 26.1 2.6 1 23 77 99 77 99 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 4 10 0.6 6.7e+02 1.1 0.3 1 23 105 134 105 134 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 5 10 2.5e-07 0.00028 21.2 3.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 6 10 0.0016 1.8 9.2 8.4 2 23 168 189 167 190 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 7 10 3.4e-08 3.8e-05 23.9 1.6 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 8 10 2.9e-06 0.0033 17.8 5.3 1 23 245 267 245 267 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 9 10 3.2 3.6e+03 -1.2 0.0 9 16 281 288 273 289 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-207 - 328 7.5e-27 92.3 75.8 10 10 0.015 17 6.1 0.1 5 23 302 323 300 323 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 1 9 8.6 9.6e+03 -2.0 0.0 4 16 24 36 21 38 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 2 9 1.8e-06 0.002 18.8 1.1 1 23 49 71 49 72 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 3 9 9.8e-07 0.0011 19.6 2.4 1 23 77 99 77 100 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 4 9 5.6 6.2e+03 -1.4 0.1 12 23 122 134 112 135 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 5 9 1.4e-05 0.016 16.0 3.3 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 6 9 0.009 10 7.3 8.5 2 24 168 190 167 190 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 7 9 3e-05 0.034 15.0 1.0 1 23 217 239 217 240 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 8 9 0.00059 0.66 11.0 5.0 1 23 245 267 245 268 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-207 - 328 1.5e-13 50.3 70.7 9 9 2.7 3e+03 -0.4 0.2 9 23 306 319 302 323 0.55 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF655-211 - 131 2.4e-25 87.9 0.3 1 1 2.1e-29 3.7e-25 87.3 0.3 2 42 85 125 84 125 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 1 10 0.0043 5.9 7.5 0.5 12 24 244 256 241 258 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 2 10 1.5e-11 2e-08 34.3 1.9 1 25 261 285 261 286 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 3 10 5.7e-08 7.8e-05 22.9 0.7 1 19 289 307 289 314 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 4 10 1.1e-05 0.015 15.7 1.6 4 25 327 348 326 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 5 10 0.12 1.7e+02 2.9 5.0 1 24 352 374 352 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 6 10 0.0036 5 7.7 0.1 2 18 380 396 379 402 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 7 10 1.2e-05 0.016 15.6 0.6 8 24 408 424 406 425 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 8 10 4.4e-10 6e-07 29.6 0.6 1 25 429 453 429 454 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 9 10 0.0013 1.8 9.2 1.9 4 26 460 482 458 482 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-212 - 526 4.4e-31 105.9 71.4 10 10 0.067 93 3.7 0.4 1 13 513 525 513 526 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 1 10 4.7 6.4e+03 -2.0 0.0 5 18 223 236 222 236 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 2 10 1e-08 1.4e-05 25.3 1.5 1 23 247 269 247 269 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 3 10 1e-08 1.4e-05 25.3 2.6 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 4 10 0.88 1.2e+03 0.3 0.3 1 23 303 332 303 332 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 5 10 3.6e-07 0.0005 20.4 3.2 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 6 10 0.0024 3.3 8.4 8.4 2 23 366 387 365 388 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 7 10 4.9e-08 6.7e-05 23.1 1.6 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 8 10 4.3e-06 0.0059 17.0 5.3 1 23 443 465 443 465 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 9 10 5 6.9e+03 -2.1 0.0 9 16 479 486 472 487 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-212 - 526 6.4e-25 86.2 75.3 10 10 0.022 30 5.3 0.1 5 23 500 521 498 521 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 1 8 2.6e-06 0.0036 18.0 1.1 1 23 247 269 247 270 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 2 8 1.4e-06 0.002 18.8 2.4 1 23 275 297 275 298 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 3 8 8 1.1e+04 -2.2 0.1 12 23 320 332 310 333 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 4 8 2.1e-05 0.029 15.2 3.3 1 23 338 360 338 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 5 8 0.013 18 6.5 8.5 2 24 366 388 365 388 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 6 8 4.4e-05 0.061 14.2 1.0 1 23 415 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 7 8 0.00086 1.2 10.2 5.0 1 23 443 465 443 466 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-212 - 526 1e-11 44.6 70.7 8 8 3.9 5.3e+03 -1.2 0.2 9 23 504 517 500 521 0.54 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 1 10 0.003 3.4 8.3 0.5 12 24 46 58 43 60 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 2 10 1e-11 1.1e-08 35.1 1.9 1 25 63 87 63 88 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 3 10 3.9e-08 4.4e-05 23.7 0.7 1 19 91 109 91 116 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 4 10 7.6e-06 0.0085 16.5 1.6 4 25 129 150 128 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 5 10 0.084 94 3.7 5.0 1 24 154 176 154 177 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 6 10 0.0025 2.9 8.5 0.1 2 18 182 198 181 204 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 7 10 8.2e-06 0.0092 16.4 0.6 8 24 210 226 208 227 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 8 10 3e-10 3.3e-07 30.4 0.6 1 25 231 255 231 256 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 9 10 0.00088 0.98 10.0 1.9 3 26 261 284 260 284 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-213 - 328 1.7e-33 113.5 71.4 10 10 0.048 54 4.5 0.4 1 13 315 327 315 328 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 1 10 3.3 3.7e+03 -1.3 0.0 5 18 25 38 24 38 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 2 10 7e-09 7.9e-06 26.1 1.5 1 23 49 71 49 71 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 3 10 6.9e-09 7.8e-06 26.1 2.6 1 23 77 99 77 99 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 4 10 0.6 6.7e+02 1.1 0.3 1 23 105 134 105 134 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 5 10 2.5e-07 0.00028 21.2 3.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 6 10 0.0016 1.8 9.2 8.4 2 23 168 189 167 190 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 7 10 3.4e-08 3.8e-05 23.9 1.6 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 8 10 2.9e-06 0.0033 17.8 5.3 1 23 245 267 245 267 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 9 10 3.2 3.6e+03 -1.2 0.0 9 16 281 288 273 289 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-213 - 328 7.5e-27 92.3 75.8 10 10 0.015 17 6.1 0.1 5 23 302 323 300 323 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 1 9 8.6 9.6e+03 -2.0 0.0 4 16 24 36 21 38 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 2 9 1.8e-06 0.002 18.8 1.1 1 23 49 71 49 72 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 3 9 9.8e-07 0.0011 19.6 2.4 1 23 77 99 77 100 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 4 9 5.6 6.2e+03 -1.4 0.1 12 23 122 134 112 135 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 5 9 1.4e-05 0.016 16.0 3.3 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 6 9 0.009 10 7.3 8.5 2 24 168 190 167 190 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 7 9 3e-05 0.034 15.0 1.0 1 23 217 239 217 240 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 8 9 0.00059 0.66 11.0 5.0 1 23 245 267 245 268 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-213 - 328 1.5e-13 50.3 70.7 9 9 2.7 3e+03 -0.4 0.2 9 23 306 319 302 323 0.55 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF655-219 - 131 2.6e-25 87.8 0.3 1 1 2.1e-29 3.7e-25 87.3 0.3 2 42 27 67 26 67 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 1 10 0.0043 5.9 7.5 0.5 12 24 244 256 241 258 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 2 10 1.5e-11 2e-08 34.3 1.9 1 25 261 285 261 286 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 3 10 5.7e-08 7.8e-05 22.9 0.7 1 19 289 307 289 314 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 4 10 1.1e-05 0.015 15.7 1.6 4 25 327 348 326 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 5 10 0.12 1.7e+02 2.9 5.0 1 24 352 374 352 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 6 10 0.0036 5 7.7 0.1 2 18 380 396 379 402 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 7 10 1.2e-05 0.016 15.6 0.6 8 24 408 424 406 425 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 8 10 4.4e-10 6e-07 29.6 0.6 1 25 429 453 429 454 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 9 10 0.0013 1.8 9.2 1.9 4 26 460 482 458 482 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-222 - 526 4.4e-31 105.9 71.4 10 10 0.067 93 3.7 0.4 1 13 513 525 513 526 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 1 10 4.7 6.4e+03 -2.0 0.0 5 18 223 236 222 236 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 2 10 1e-08 1.4e-05 25.3 1.5 1 23 247 269 247 269 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 3 10 1e-08 1.4e-05 25.3 2.6 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 4 10 0.88 1.2e+03 0.3 0.3 1 23 303 332 303 332 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 5 10 3.6e-07 0.0005 20.4 3.2 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 6 10 0.0024 3.3 8.4 8.4 2 23 366 387 365 388 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 7 10 4.9e-08 6.7e-05 23.1 1.6 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 8 10 4.3e-06 0.0059 17.0 5.3 1 23 443 465 443 465 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 9 10 5 6.9e+03 -2.1 0.0 9 16 479 486 472 487 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-222 - 526 6.4e-25 86.2 75.3 10 10 0.022 30 5.3 0.1 5 23 500 521 498 521 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 1 8 2.6e-06 0.0036 18.0 1.1 1 23 247 269 247 270 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 2 8 1.4e-06 0.002 18.8 2.4 1 23 275 297 275 298 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 3 8 8 1.1e+04 -2.2 0.1 12 23 320 332 310 333 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 4 8 2.1e-05 0.029 15.2 3.3 1 23 338 360 338 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 5 8 0.013 18 6.5 8.5 2 24 366 388 365 388 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 6 8 4.4e-05 0.061 14.2 1.0 1 23 415 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 7 8 0.00086 1.2 10.2 5.0 1 23 443 465 443 466 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-222 - 526 1e-11 44.6 70.7 8 8 3.9 5.3e+03 -1.2 0.2 9 23 504 517 500 521 0.54 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 1 10 0.003 3.4 8.3 0.5 12 24 46 58 43 60 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 2 10 1e-11 1.1e-08 35.1 1.9 1 25 63 87 63 88 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 3 10 3.9e-08 4.4e-05 23.7 0.7 1 19 91 109 91 116 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 4 10 7.6e-06 0.0085 16.5 1.6 4 25 129 150 128 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 5 10 0.084 94 3.7 5.0 1 24 154 176 154 177 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 6 10 0.0025 2.9 8.5 0.1 2 18 182 198 181 204 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 7 10 8.2e-06 0.0092 16.4 0.6 8 24 210 226 208 227 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 8 10 3e-10 3.3e-07 30.4 0.6 1 25 231 255 231 256 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 9 10 0.00088 0.98 10.0 1.9 3 26 261 284 260 284 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF655-224 - 328 1.7e-33 113.5 71.4 10 10 0.048 54 4.5 0.4 1 13 315 327 315 328 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 1 10 3.3 3.7e+03 -1.3 0.0 5 18 25 38 24 38 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 2 10 7e-09 7.9e-06 26.1 1.5 1 23 49 71 49 71 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 3 10 6.9e-09 7.8e-06 26.1 2.6 1 23 77 99 77 99 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 4 10 0.6 6.7e+02 1.1 0.3 1 23 105 134 105 134 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 5 10 2.5e-07 0.00028 21.2 3.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 6 10 0.0016 1.8 9.2 8.4 2 23 168 189 167 190 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 7 10 3.4e-08 3.8e-05 23.9 1.6 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 8 10 2.9e-06 0.0033 17.8 5.3 1 23 245 267 245 267 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 9 10 3.2 3.6e+03 -1.2 0.0 9 16 281 288 273 289 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF655-224 - 328 7.5e-27 92.3 75.8 10 10 0.015 17 6.1 0.1 5 23 302 323 300 323 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 1 9 8.6 9.6e+03 -2.0 0.0 4 16 24 36 21 38 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 2 9 1.8e-06 0.002 18.8 1.1 1 23 49 71 49 72 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 3 9 9.8e-07 0.0011 19.6 2.4 1 23 77 99 77 100 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 4 9 5.6 6.2e+03 -1.4 0.1 12 23 122 134 112 135 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 5 9 1.4e-05 0.016 16.0 3.3 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 6 9 0.009 10 7.3 8.5 2 24 168 190 167 190 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 7 9 3e-05 0.034 15.0 1.0 1 23 217 239 217 240 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 8 9 0.00059 0.66 11.0 5.0 1 23 245 267 245 268 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF655-224 - 328 1.5e-13 50.3 70.7 9 9 2.7 3e+03 -0.4 0.2 9 23 306 319 302 323 0.55 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 1 18 0.044 34 5.1 0.5 13 24 20 31 16 33 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 2 18 2.7e-05 0.021 15.2 1.0 11 26 80 95 77 95 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 3 18 4.9e-09 3.8e-06 27.1 0.9 2 24 99 121 98 121 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 4 18 4.8e-06 0.0037 17.6 0.1 2 24 127 149 127 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 5 18 1.1e-08 8.2e-06 26.0 0.1 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 6 18 7.8e-06 0.0061 16.9 1.0 2 25 183 206 183 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 7 18 8.1e-11 6.3e-08 32.7 0.4 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 8 18 2.1e-07 0.00016 21.9 0.9 5 25 242 262 238 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 9 18 5.8e-08 4.5e-05 23.7 0.5 2 25 267 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 10 18 4.8e-08 3.8e-05 23.9 2.6 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 11 18 1.7e-09 1.3e-06 28.5 0.1 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 12 18 2.9e-08 2.2e-05 24.6 0.1 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 13 18 1e-09 8e-07 29.2 1.0 1 25 378 402 378 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 14 18 0.17 1.3e+02 3.3 0.3 1 10 406 415 406 419 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 15 18 0.081 63 4.2 0.9 12 26 511 527 510 527 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 16 18 1.3e-07 0.0001 22.6 0.8 2 25 531 554 531 555 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 17 18 6.9e-10 5.4e-07 29.8 2.2 1 25 558 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-201 - 619 1.4e-87 284.5 113.2 18 18 0.037 29 5.3 0.0 1 12 586 597 586 605 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 1 16 0.0014 1.1 9.9 0.2 1 23 22 44 22 44 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 2 16 2.8e-06 0.0022 18.4 0.1 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 3 16 2.1e-06 0.0017 18.7 0.5 1 23 112 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 4 16 1.5e-05 0.011 16.1 0.6 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 5 16 4.3e-08 3.4e-05 24.1 0.4 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 6 16 2.3e-05 0.018 15.5 0.3 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 7 16 1.5e-06 0.0012 19.2 3.4 2 23 225 246 224 246 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 8 16 1.4e-07 0.00011 22.4 0.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 9 16 9.5e-08 7.4e-05 23.0 1.2 2 23 281 302 280 302 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 10 16 4.7e-07 0.00036 20.8 0.9 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 11 16 2.5e-06 0.0019 18.5 0.2 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 12 16 1.1e-06 0.00086 19.6 0.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 13 16 6.1e-07 0.00048 20.4 2.2 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 14 16 2.7e-06 0.0021 18.4 1.8 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 15 16 4.8e-08 3.7e-05 23.9 1.0 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-201 - 619 1.6e-73 239.2 108.6 16 16 3e-07 0.00023 21.4 1.5 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 1 16 0.006 4.7 8.3 0.1 1 23 22 44 22 45 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 2 16 0.00032 0.25 12.3 0.2 1 19 84 102 84 107 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 3 16 2.7e-06 0.0021 18.7 0.6 1 23 112 134 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 4 16 0.0074 5.8 8.0 0.6 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 5 16 1.7e-05 0.013 16.3 0.2 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 6 16 1.8e-05 0.014 16.2 0.3 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 7 16 7.1e-05 0.055 14.3 2.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 8 16 7.6e-06 0.0059 17.3 0.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 9 16 3.7e-07 0.00029 21.4 0.7 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 10 16 0.0004 0.31 12.0 0.7 1 23 308 330 308 331 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 11 16 6.8e-05 0.053 14.4 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 12 16 4.7e-05 0.037 14.9 0.4 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 13 16 2.2e-05 0.017 15.9 2.4 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 14 16 3.9e-06 0.003 18.2 1.1 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 15 16 7.2e-08 5.6e-05 23.6 0.7 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-201 - 619 2e-56 183.7 105.4 16 16 2e-07 0.00016 22.3 1.0 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 1 16 0.68 5.3e+02 1.1 0.2 2 13 22 33 21 34 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 2 16 0.01 8 6.9 0.0 2 20 84 102 83 106 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 3 16 1.9 1.5e+03 -0.3 0.0 2 11 112 121 111 121 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 4 16 0.27 2.1e+02 2.4 0.1 2 22 140 160 139 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 5 16 0.00015 0.11 12.8 0.0 2 24 168 190 167 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 6 16 0.0088 6.9 7.1 0.1 2 24 196 218 195 218 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 7 16 0.052 41 4.6 0.2 4 20 226 242 223 244 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 8 16 0.0002 0.15 12.3 0.0 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 9 16 0.0042 3.3 8.1 0.0 4 22 282 300 279 300 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 10 16 9.7 7.6e+03 -2.6 0.2 4 20 310 326 308 328 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 11 16 0.011 8.8 6.8 0.2 2 11 336 345 335 354 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 12 16 0.015 12 6.3 0.0 2 20 364 382 363 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 13 16 0.0039 3.1 8.2 0.3 2 24 392 414 391 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 14 16 2e-05 0.015 15.5 0.1 1 24 515 538 515 539 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 15 16 0.011 8.4 6.8 0.0 2 21 544 563 543 567 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-201 - 619 5.6e-29 99.8 42.4 16 16 1.6e-06 0.0012 19.1 0.0 2 24 572 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 1 15 0.16 1.2e+02 2.8 0.5 1 12 21 32 21 33 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 2 15 0.0061 4.7 7.3 0.1 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 3 15 0.0048 3.8 7.6 0.1 2 24 112 134 112 137 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 4 15 0.036 28 4.8 0.2 2 24 168 190 168 192 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 5 15 0.0015 1.2 9.3 0.5 2 24 196 218 196 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 6 15 0.00048 0.37 10.8 2.7 2 24 224 246 224 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 7 15 0.028 21 5.2 1.0 2 24 252 274 252 277 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 8 15 3.4 2.6e+03 -1.4 0.1 2 12 280 290 280 303 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 9 15 0.092 72 3.5 0.3 2 24 308 330 308 332 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 10 15 0.12 91 3.2 1.1 2 11 336 345 336 346 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 11 15 0.0033 2.6 8.2 0.4 2 25 364 387 364 389 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 12 15 0.00017 0.13 12.3 3.0 2 26 392 416 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 13 15 2.1e-05 0.016 15.2 0.3 2 25 516 539 515 540 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 14 15 3.4e-06 0.0027 17.7 0.7 2 26 544 568 544 569 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-201 - 619 4.2e-16 58.5 91.3 15 15 0.0048 3.8 7.6 0.2 2 24 572 594 572 595 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 1 15 0.32 2.5e+02 1.4 0.1 3 14 22 33 20 40 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 2 15 1.9 1.4e+03 -1.1 0.1 3 20 84 102 83 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 3 15 0.018 14 5.4 0.2 3 12 112 121 110 124 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 4 15 0.006 4.7 6.9 0.0 3 15 168 180 166 183 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 5 15 0.0034 2.6 7.7 0.1 3 20 196 214 194 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 6 15 0.00018 0.14 11.8 0.8 3 21 224 243 222 250 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 7 15 0.014 11 5.7 0.1 3 21 252 271 250 271 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 8 15 0.00059 0.46 10.1 0.1 3 20 280 298 278 299 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 9 15 0.021 17 5.1 0.2 3 17 308 323 306 327 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 10 15 0.08 62 3.3 0.0 3 20 336 354 334 355 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 11 15 0.017 13 5.5 0.1 3 20 364 382 363 383 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 12 15 0.16 1.2e+02 2.4 0.1 3 20 392 410 391 411 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 13 15 0.032 25 4.6 0.1 2 14 515 527 514 535 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 14 15 0.006 4.7 6.9 0.1 3 14 544 555 542 563 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-201 - 619 4e-14 51.9 54.7 15 15 0.017 14 5.4 0.2 3 21 572 591 570 591 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 1 15 8.7 6.7e+03 -2.3 0.1 1 12 22 33 22 40 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 2 15 0.12 97 3.6 0.0 1 24 84 105 84 106 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 3 15 0.13 98 3.5 0.0 3 23 114 134 112 135 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 4 15 0.0023 1.8 9.1 0.1 1 19 168 186 168 190 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 5 15 0.13 98 3.5 0.3 1 23 196 218 196 219 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 6 15 0.081 63 4.2 2.1 3 21 226 244 224 247 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 7 15 0.00013 0.1 13.1 0.2 1 21 252 272 252 274 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 8 15 0.0021 1.7 9.2 0.0 3 21 282 300 280 302 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 9 15 0.2 1.6e+02 2.9 0.1 1 19 308 326 308 330 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 10 15 2.5 2e+03 -0.6 0.2 6 19 341 354 336 355 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 11 15 0.81 6.3e+02 1.0 0.1 1 25 364 386 364 386 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 12 15 0.027 21 5.7 0.9 1 22 392 413 392 415 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 13 15 0.009 7 7.2 0.1 1 23 516 538 516 539 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 14 15 0.084 65 4.1 0.3 3 25 546 566 544 566 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-201 - 619 5.5e-09 36.1 62.5 15 15 0.04 31 5.1 0.1 1 21 572 592 572 594 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 1 16 0.094 73 3.6 0.2 6 16 22 32 21 54 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 2 16 0.92 7.1e+02 0.4 0.2 18 33 74 90 69 96 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 3 16 0.24 1.9e+02 2.3 4.0 6 34 84 119 83 123 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 4 16 0.5 3.9e+02 1.3 4.4 7 32 113 145 111 149 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 5 16 3 2.4e+03 -1.2 0.2 6 16 140 150 139 158 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 6 16 0.0014 1.1 9.4 2.5 6 35 168 204 167 208 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 7 16 0.026 20 5.4 3.8 6 38 196 235 195 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 8 16 0.00017 0.13 12.4 3.3 6 34 224 259 223 262 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 9 16 1.7e-05 0.013 15.6 2.1 6 34 252 287 251 291 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 10 16 0.0026 2 8.6 4.2 6 37 280 318 279 320 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 11 16 0.0052 4 7.6 0.6 6 16 308 318 305 333 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 12 16 0.19 1.5e+02 2.6 0.0 6 15 336 345 335 358 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 13 16 0.0043 3.3 7.9 0.2 6 21 364 379 363 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 14 16 0.013 10 6.4 0.1 6 20 392 406 391 414 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 15 16 0.027 21 5.4 3.5 6 33 516 550 515 551 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-201 - 619 2.7e-08 33.8 74.5 16 16 0.00078 0.61 10.3 1.1 6 32 544 577 540 581 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 1 15 2.8 2.2e+03 -1.5 0.1 5 12 22 29 22 40 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 2 15 0.033 26 4.7 0.2 7 24 114 131 112 132 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 3 15 2.8 2.2e+03 -1.5 0.1 5 11 140 146 140 158 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 4 15 0.037 29 4.5 0.1 7 25 170 188 167 190 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 5 15 1.1 8.8e+02 -0.2 0.1 7 16 198 207 196 216 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 6 15 0.19 1.5e+02 2.3 6.1 7 26 226 245 224 246 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 7 15 0.44 3.4e+02 1.1 0.4 5 15 252 262 250 270 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 8 15 0.0031 2.4 8.0 0.7 7 24 282 299 280 301 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 9 15 0.87 6.7e+02 0.2 0.1 6 24 309 327 307 330 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 10 15 0.0032 2.5 8.0 0.0 5 24 336 355 335 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 11 15 1.8e-05 0.014 15.1 0.1 5 25 364 384 363 386 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 12 15 0.0037 2.9 7.7 0.4 6 23 393 410 391 413 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 13 15 0.00096 0.75 9.6 0.3 7 23 518 534 515 536 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 14 15 0.0025 2 8.3 0.4 7 24 546 563 544 565 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-201 - 619 1.3e-07 31.2 72.4 15 15 0.41 3.2e+02 1.2 0.1 7 23 574 590 569 593 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 1 18 0.044 34 5.1 0.5 13 24 20 31 16 33 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 2 18 2.7e-05 0.021 15.2 1.0 11 26 80 95 77 95 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 3 18 4.9e-09 3.8e-06 27.1 0.9 2 24 99 121 98 121 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 4 18 4.8e-06 0.0037 17.6 0.1 2 24 127 149 127 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 5 18 1.1e-08 8.2e-06 26.0 0.1 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 6 18 7.8e-06 0.0061 16.9 1.0 2 25 183 206 183 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 7 18 8.1e-11 6.3e-08 32.7 0.4 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 8 18 2.1e-07 0.00016 21.9 0.9 5 25 242 262 238 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 9 18 5.8e-08 4.5e-05 23.7 0.5 2 25 267 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 10 18 4.8e-08 3.8e-05 23.9 2.6 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 11 18 1.7e-09 1.3e-06 28.5 0.1 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 12 18 2.9e-08 2.2e-05 24.6 0.1 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 13 18 1e-09 8e-07 29.2 1.0 1 25 378 402 378 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 14 18 0.17 1.3e+02 3.3 0.3 1 10 406 415 406 419 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 15 18 0.081 63 4.2 0.9 12 26 511 527 510 527 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 16 18 1.3e-07 0.0001 22.6 0.8 2 25 531 554 531 555 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 17 18 6.9e-10 5.4e-07 29.8 2.2 1 25 558 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-202 - 619 1.4e-87 284.5 113.2 18 18 0.037 29 5.3 0.0 1 12 586 597 586 605 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 1 16 0.0014 1.1 9.9 0.2 1 23 22 44 22 44 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 2 16 2.8e-06 0.0022 18.4 0.1 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 3 16 2.1e-06 0.0017 18.7 0.5 1 23 112 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 4 16 1.5e-05 0.011 16.1 0.6 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 5 16 4.3e-08 3.4e-05 24.1 0.4 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 6 16 2.3e-05 0.018 15.5 0.3 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 7 16 1.5e-06 0.0012 19.2 3.4 2 23 225 246 224 246 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 8 16 1.4e-07 0.00011 22.4 0.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 9 16 9.5e-08 7.4e-05 23.0 1.2 2 23 281 302 280 302 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 10 16 4.7e-07 0.00036 20.8 0.9 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 11 16 2.5e-06 0.0019 18.5 0.2 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 12 16 1.1e-06 0.00086 19.6 0.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 13 16 6.1e-07 0.00048 20.4 2.2 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 14 16 2.7e-06 0.0021 18.4 1.8 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 15 16 4.8e-08 3.7e-05 23.9 1.0 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-202 - 619 1.6e-73 239.2 108.6 16 16 3e-07 0.00023 21.4 1.5 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 1 16 0.006 4.7 8.3 0.1 1 23 22 44 22 45 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 2 16 0.00032 0.25 12.3 0.2 1 19 84 102 84 107 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 3 16 2.7e-06 0.0021 18.7 0.6 1 23 112 134 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 4 16 0.0074 5.8 8.0 0.6 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 5 16 1.7e-05 0.013 16.3 0.2 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 6 16 1.8e-05 0.014 16.2 0.3 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 7 16 7.1e-05 0.055 14.3 2.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 8 16 7.6e-06 0.0059 17.3 0.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 9 16 3.7e-07 0.00029 21.4 0.7 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 10 16 0.0004 0.31 12.0 0.7 1 23 308 330 308 331 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 11 16 6.8e-05 0.053 14.4 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 12 16 4.7e-05 0.037 14.9 0.4 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 13 16 2.2e-05 0.017 15.9 2.4 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 14 16 3.9e-06 0.003 18.2 1.1 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 15 16 7.2e-08 5.6e-05 23.6 0.7 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-202 - 619 2e-56 183.7 105.4 16 16 2e-07 0.00016 22.3 1.0 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 1 16 0.68 5.3e+02 1.1 0.2 2 13 22 33 21 34 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 2 16 0.01 8 6.9 0.0 2 20 84 102 83 106 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 3 16 1.9 1.5e+03 -0.3 0.0 2 11 112 121 111 121 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 4 16 0.27 2.1e+02 2.4 0.1 2 22 140 160 139 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 5 16 0.00015 0.11 12.8 0.0 2 24 168 190 167 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 6 16 0.0088 6.9 7.1 0.1 2 24 196 218 195 218 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 7 16 0.052 41 4.6 0.2 4 20 226 242 223 244 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 8 16 0.0002 0.15 12.3 0.0 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 9 16 0.0042 3.3 8.1 0.0 4 22 282 300 279 300 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 10 16 9.7 7.6e+03 -2.6 0.2 4 20 310 326 308 328 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 11 16 0.011 8.8 6.8 0.2 2 11 336 345 335 354 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 12 16 0.015 12 6.3 0.0 2 20 364 382 363 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 13 16 0.0039 3.1 8.2 0.3 2 24 392 414 391 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 14 16 2e-05 0.015 15.5 0.1 1 24 515 538 515 539 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 15 16 0.011 8.4 6.8 0.0 2 21 544 563 543 567 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-202 - 619 5.6e-29 99.8 42.4 16 16 1.6e-06 0.0012 19.1 0.0 2 24 572 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 1 15 0.16 1.2e+02 2.8 0.5 1 12 21 32 21 33 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 2 15 0.0061 4.7 7.3 0.1 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 3 15 0.0048 3.8 7.6 0.1 2 24 112 134 112 137 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 4 15 0.036 28 4.8 0.2 2 24 168 190 168 192 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 5 15 0.0015 1.2 9.3 0.5 2 24 196 218 196 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 6 15 0.00048 0.37 10.8 2.7 2 24 224 246 224 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 7 15 0.028 21 5.2 1.0 2 24 252 274 252 277 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 8 15 3.4 2.6e+03 -1.4 0.1 2 12 280 290 280 303 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 9 15 0.092 72 3.5 0.3 2 24 308 330 308 332 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 10 15 0.12 91 3.2 1.1 2 11 336 345 336 346 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 11 15 0.0033 2.6 8.2 0.4 2 25 364 387 364 389 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 12 15 0.00017 0.13 12.3 3.0 2 26 392 416 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 13 15 2.1e-05 0.016 15.2 0.3 2 25 516 539 515 540 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 14 15 3.4e-06 0.0027 17.7 0.7 2 26 544 568 544 569 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-202 - 619 4.2e-16 58.5 91.3 15 15 0.0048 3.8 7.6 0.2 2 24 572 594 572 595 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 1 15 0.32 2.5e+02 1.4 0.1 3 14 22 33 20 40 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 2 15 1.9 1.4e+03 -1.1 0.1 3 20 84 102 83 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 3 15 0.018 14 5.4 0.2 3 12 112 121 110 124 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 4 15 0.006 4.7 6.9 0.0 3 15 168 180 166 183 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 5 15 0.0034 2.6 7.7 0.1 3 20 196 214 194 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 6 15 0.00018 0.14 11.8 0.8 3 21 224 243 222 250 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 7 15 0.014 11 5.7 0.1 3 21 252 271 250 271 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 8 15 0.00059 0.46 10.1 0.1 3 20 280 298 278 299 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 9 15 0.021 17 5.1 0.2 3 17 308 323 306 327 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 10 15 0.08 62 3.3 0.0 3 20 336 354 334 355 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 11 15 0.017 13 5.5 0.1 3 20 364 382 363 383 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 12 15 0.16 1.2e+02 2.4 0.1 3 20 392 410 391 411 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 13 15 0.032 25 4.6 0.1 2 14 515 527 514 535 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 14 15 0.006 4.7 6.9 0.1 3 14 544 555 542 563 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-202 - 619 4e-14 51.9 54.7 15 15 0.017 14 5.4 0.2 3 21 572 591 570 591 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 1 15 8.7 6.7e+03 -2.3 0.1 1 12 22 33 22 40 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 2 15 0.12 97 3.6 0.0 1 24 84 105 84 106 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 3 15 0.13 98 3.5 0.0 3 23 114 134 112 135 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 4 15 0.0023 1.8 9.1 0.1 1 19 168 186 168 190 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 5 15 0.13 98 3.5 0.3 1 23 196 218 196 219 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 6 15 0.081 63 4.2 2.1 3 21 226 244 224 247 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 7 15 0.00013 0.1 13.1 0.2 1 21 252 272 252 274 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 8 15 0.0021 1.7 9.2 0.0 3 21 282 300 280 302 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 9 15 0.2 1.6e+02 2.9 0.1 1 19 308 326 308 330 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 10 15 2.5 2e+03 -0.6 0.2 6 19 341 354 336 355 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 11 15 0.81 6.3e+02 1.0 0.1 1 25 364 386 364 386 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 12 15 0.027 21 5.7 0.9 1 22 392 413 392 415 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 13 15 0.009 7 7.2 0.1 1 23 516 538 516 539 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 14 15 0.084 65 4.1 0.3 3 25 546 566 544 566 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-202 - 619 5.5e-09 36.1 62.5 15 15 0.04 31 5.1 0.1 1 21 572 592 572 594 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 1 16 0.094 73 3.6 0.2 6 16 22 32 21 54 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 2 16 0.92 7.1e+02 0.4 0.2 18 33 74 90 69 96 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 3 16 0.24 1.9e+02 2.3 4.0 6 34 84 119 83 123 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 4 16 0.5 3.9e+02 1.3 4.4 7 32 113 145 111 149 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 5 16 3 2.4e+03 -1.2 0.2 6 16 140 150 139 158 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 6 16 0.0014 1.1 9.4 2.5 6 35 168 204 167 208 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 7 16 0.026 20 5.4 3.8 6 38 196 235 195 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 8 16 0.00017 0.13 12.4 3.3 6 34 224 259 223 262 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 9 16 1.7e-05 0.013 15.6 2.1 6 34 252 287 251 291 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 10 16 0.0026 2 8.6 4.2 6 37 280 318 279 320 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 11 16 0.0052 4 7.6 0.6 6 16 308 318 305 333 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 12 16 0.19 1.5e+02 2.6 0.0 6 15 336 345 335 358 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 13 16 0.0043 3.3 7.9 0.2 6 21 364 379 363 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 14 16 0.013 10 6.4 0.1 6 20 392 406 391 414 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 15 16 0.027 21 5.4 3.5 6 33 516 550 515 551 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-202 - 619 2.7e-08 33.8 74.5 16 16 0.00078 0.61 10.3 1.1 6 32 544 577 540 581 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 1 15 2.8 2.2e+03 -1.5 0.1 5 12 22 29 22 40 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 2 15 0.033 26 4.7 0.2 7 24 114 131 112 132 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 3 15 2.8 2.2e+03 -1.5 0.1 5 11 140 146 140 158 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 4 15 0.037 29 4.5 0.1 7 25 170 188 167 190 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 5 15 1.1 8.8e+02 -0.2 0.1 7 16 198 207 196 216 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 6 15 0.19 1.5e+02 2.3 6.1 7 26 226 245 224 246 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 7 15 0.44 3.4e+02 1.1 0.4 5 15 252 262 250 270 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 8 15 0.0031 2.4 8.0 0.7 7 24 282 299 280 301 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 9 15 0.87 6.7e+02 0.2 0.1 6 24 309 327 307 330 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 10 15 0.0032 2.5 8.0 0.0 5 24 336 355 335 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 11 15 1.8e-05 0.014 15.1 0.1 5 25 364 384 363 386 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 12 15 0.0037 2.9 7.7 0.4 6 23 393 410 391 413 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 13 15 0.00096 0.75 9.6 0.3 7 23 518 534 515 536 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 14 15 0.0025 2 8.3 0.4 7 24 546 563 544 565 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-202 - 619 1.3e-07 31.2 72.4 15 15 0.41 3.2e+02 1.2 0.1 7 23 574 590 569 593 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 1 18 0.052 41 4.9 0.7 13 24 43 54 38 56 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 2 18 2.8e-05 0.022 15.2 1.0 11 26 103 118 100 118 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 3 18 5.1e-09 4e-06 27.0 0.9 2 24 122 144 121 144 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 4 18 5e-06 0.0039 17.6 0.1 2 24 150 172 150 174 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 5 18 1.1e-08 8.6e-06 26.0 0.1 2 25 178 201 177 202 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 6 18 8.1e-06 0.0064 16.9 1.0 2 25 206 229 206 230 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 7 18 8.5e-11 6.6e-08 32.6 0.4 1 25 233 257 233 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 8 18 2.2e-07 0.00017 21.9 0.9 5 25 265 285 261 286 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 9 18 6e-08 4.7e-05 23.6 0.5 2 25 290 313 289 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 10 18 5e-08 3.9e-05 23.9 2.6 2 25 318 341 317 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 11 18 1.8e-09 1.4e-06 28.5 0.1 2 25 346 369 345 370 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 12 18 3e-08 2.3e-05 24.6 0.1 1 25 373 397 373 398 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 13 18 1.1e-09 8.4e-07 29.2 1.0 1 25 401 425 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 14 18 0.17 1.4e+02 3.2 0.3 1 10 429 438 429 442 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 15 18 0.085 66 4.2 0.9 12 26 534 550 533 550 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 16 18 1.3e-07 0.0001 22.5 0.8 2 25 554 577 554 578 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 17 18 7.2e-10 5.6e-07 29.7 2.2 1 25 581 605 581 606 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-205 - 642 4.5e-87 282.9 113.8 18 18 0.039 30 5.3 0.0 1 12 609 620 609 628 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 1 16 0.0015 1.1 9.8 0.2 1 23 45 67 45 67 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 2 16 2.9e-06 0.0023 18.3 0.1 1 23 107 129 107 129 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 3 16 2.2e-06 0.0017 18.7 0.5 1 23 135 157 135 157 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 4 16 1.5e-05 0.012 16.0 0.6 1 23 163 185 163 185 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 5 16 4.5e-08 3.5e-05 24.0 0.4 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 6 16 2.4e-05 0.019 15.4 0.3 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 7 16 1.6e-06 0.0012 19.1 3.4 2 23 248 269 247 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 8 16 1.5e-07 0.00012 22.4 0.7 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 9 16 9.9e-08 7.7e-05 22.9 1.2 2 23 304 325 303 325 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 10 16 4.9e-07 0.00038 20.8 0.9 1 23 331 353 331 353 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 11 16 2.6e-06 0.002 18.5 0.2 1 23 359 381 359 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 12 16 1.1e-06 0.0009 19.6 0.2 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 13 16 6.4e-07 0.0005 20.4 2.2 1 23 415 437 415 437 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 14 16 2.8e-06 0.0022 18.3 1.8 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 15 16 5e-08 3.9e-05 23.9 1.0 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-205 - 642 3.2e-73 238.3 108.6 16 16 3.1e-07 0.00024 21.4 1.5 1 23 595 617 595 617 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 1 16 0.0063 4.9 8.3 0.1 1 23 45 67 45 68 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 2 16 0.00034 0.26 12.2 0.2 1 19 107 125 107 130 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 3 16 2.9e-06 0.0022 18.7 0.6 1 23 135 157 135 158 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 4 16 0.0077 6 8.0 0.6 1 23 163 185 163 186 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 5 16 1.8e-05 0.014 16.2 0.2 1 23 191 213 191 214 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 6 16 1.9e-05 0.015 16.1 0.3 1 23 219 241 219 242 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 7 16 7.4e-05 0.058 14.3 2.7 1 23 247 269 247 270 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 8 16 7.9e-06 0.0062 17.3 0.6 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 9 16 3.9e-07 0.0003 21.4 0.7 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 10 16 0.00042 0.33 11.9 0.7 1 23 331 353 331 354 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 11 16 7.1e-05 0.056 14.3 0.5 1 23 359 381 359 382 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 12 16 4.9e-05 0.038 14.8 0.4 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 13 16 2.3e-05 0.018 15.8 2.4 1 23 415 437 415 438 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 14 16 4.1e-06 0.0032 18.2 1.1 1 23 539 561 539 562 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 15 16 7.5e-08 5.8e-05 23.6 0.7 1 23 567 589 567 590 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-205 - 642 4e-56 182.8 105.4 16 16 2.1e-07 0.00016 22.2 1.0 1 23 595 617 595 618 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 1 15 0.7 5.5e+02 1.0 0.2 2 13 45 56 44 57 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 2 15 0.011 8.4 6.8 0.0 2 20 107 125 106 129 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 3 15 1.9 1.5e+03 -0.4 0.0 2 11 135 144 134 144 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 4 15 0.28 2.2e+02 2.3 0.1 2 22 163 183 162 185 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 5 15 0.00015 0.12 12.7 0.0 2 24 191 213 190 214 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 6 15 0.0092 7.2 7.0 0.1 2 24 219 241 218 241 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 7 15 0.054 42 4.6 0.2 4 20 249 265 246 267 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 8 15 0.00021 0.16 12.3 0.0 2 24 275 297 274 298 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 9 15 0.0044 3.4 8.1 0.0 4 22 305 323 302 323 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 10 15 0.012 9.2 6.7 0.2 2 11 359 368 358 377 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 11 15 0.016 12 6.3 0.0 2 20 387 405 386 406 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 12 15 0.0041 3.2 8.2 0.3 2 24 415 437 414 438 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 13 15 2.1e-05 0.016 15.5 0.1 1 24 538 561 538 562 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 14 15 0.011 8.7 6.8 0.0 2 21 567 586 566 590 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-205 - 642 1e-28 98.9 42.4 15 15 1.6e-06 0.0013 19.0 0.0 2 24 595 617 594 618 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 1 15 0.16 1.3e+02 2.8 0.5 1 12 44 55 44 56 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 2 15 0.0063 4.9 7.3 0.1 2 24 107 129 107 132 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 3 15 0.005 3.9 7.6 0.1 2 24 135 157 135 160 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 4 15 0.038 29 4.8 0.2 2 24 191 213 191 215 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 5 15 0.0016 1.2 9.2 0.5 2 24 219 241 219 244 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 6 15 0.0005 0.39 10.8 2.7 2 24 247 269 247 272 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 7 15 0.029 22 5.2 1.0 2 24 275 297 275 300 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 8 15 3.5 2.7e+03 -1.5 0.1 2 12 303 313 303 326 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 9 15 0.096 75 3.5 0.3 2 24 331 353 331 355 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 10 15 0.12 94 3.2 1.1 2 11 359 368 359 369 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 11 15 0.0034 2.7 8.1 0.4 2 25 387 410 387 412 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 12 15 0.00017 0.14 12.2 3.0 2 26 415 439 415 440 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 13 15 2.2e-05 0.017 15.1 0.3 2 25 539 562 538 563 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 14 15 3.6e-06 0.0028 17.6 0.7 2 26 567 591 567 592 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-205 - 642 7.9e-16 57.6 91.3 15 15 0.0051 3.9 7.6 0.2 2 24 595 617 595 618 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 1 15 0.33 2.6e+02 1.3 0.1 3 14 45 56 43 63 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 2 15 1.9 1.5e+03 -1.1 0.1 3 20 107 125 106 125 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 3 15 0.018 14 5.3 0.2 3 12 135 144 133 147 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 4 15 0.0062 4.9 6.8 0.0 3 15 191 203 189 206 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 5 15 0.0035 2.7 7.6 0.1 3 20 219 237 217 238 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 6 15 0.00019 0.15 11.7 0.8 3 21 247 266 245 273 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 7 15 0.015 12 5.6 0.1 3 21 275 294 273 294 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 8 15 0.00062 0.48 10.1 0.1 3 20 303 321 301 322 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 9 15 0.022 17 5.1 0.2 3 17 331 346 329 350 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 10 15 0.083 65 3.2 0.0 3 20 359 377 357 378 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 11 15 0.017 14 5.4 0.1 3 20 387 405 386 406 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 12 15 0.16 1.3e+02 2.3 0.1 3 20 415 433 414 434 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 13 15 0.034 26 4.5 0.1 2 14 538 550 537 558 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 14 15 0.0063 4.9 6.8 0.1 3 14 567 578 565 586 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-205 - 642 7.3e-14 51.1 54.7 15 15 0.018 14 5.4 0.2 3 21 595 614 593 614 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 1 15 9 7e+03 -2.3 0.1 1 12 45 56 45 63 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 2 15 0.13 1e+02 3.5 0.0 1 24 107 128 107 129 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 3 15 0.13 1e+02 3.5 0.0 3 23 137 157 135 158 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 4 15 0.0024 1.9 9.0 0.1 1 19 191 209 191 213 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 5 15 0.13 1e+02 3.5 0.3 1 23 219 241 219 242 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 6 15 0.084 66 4.1 2.1 3 21 249 267 247 270 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 7 15 0.00013 0.1 13.0 0.2 1 21 275 295 275 297 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 8 15 0.0022 1.7 9.1 0.0 3 21 305 323 303 325 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 9 15 0.21 1.7e+02 2.8 0.1 1 19 331 349 331 353 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 10 15 2.7 2.1e+03 -0.7 0.2 6 19 364 377 359 378 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 11 15 0.84 6.6e+02 0.9 0.1 1 25 387 409 387 409 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 12 15 0.029 22 5.6 0.9 1 22 415 436 415 438 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 13 15 0.0094 7.3 7.1 0.1 1 23 539 561 539 562 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 14 15 0.087 68 4.1 0.3 3 25 569 589 567 589 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-205 - 642 9.9e-09 35.3 62.5 15 15 0.042 33 5.1 0.1 1 21 595 615 595 617 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 1 15 0.098 76 3.5 0.2 6 16 45 55 44 77 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 2 15 0.95 7.4e+02 0.4 0.2 18 33 97 113 92 119 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 3 15 0.24 1.8e+02 2.3 4.0 6 34 107 142 106 146 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 4 15 0.32 2.5e+02 1.9 3.9 7 32 136 168 133 178 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 5 15 0.0013 1 9.6 2.3 6 35 191 227 190 231 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 6 15 0.018 14 5.9 3.2 6 38 219 258 216 259 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 7 15 6.9e-05 0.054 13.6 2.6 6 34 247 282 246 288 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 8 15 1.5e-05 0.012 15.8 1.9 6 34 275 310 274 314 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 9 15 0.0025 2 8.6 4.1 6 37 303 341 302 343 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 10 15 0.0054 4.2 7.6 0.6 6 16 331 341 328 356 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 11 15 0.2 1.5e+02 2.6 0.0 6 15 359 368 358 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 12 15 0.0044 3.5 7.8 0.2 6 21 387 402 386 409 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 13 15 0.013 11 6.3 0.1 6 20 415 429 414 437 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 14 15 0.029 23 5.2 3.6 6 33 539 573 538 574 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-205 - 642 3e-08 33.6 73.9 15 15 0.00086 0.67 10.1 1.2 6 32 567 600 563 604 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 1 15 2.9 2.3e+03 -1.5 0.1 5 12 45 52 45 63 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 2 15 0.034 27 4.6 0.2 7 24 137 154 135 155 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 3 15 2.9 2.3e+03 -1.5 0.1 5 11 163 169 163 181 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 4 15 0.039 30 4.5 0.1 7 25 193 211 190 213 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 5 15 1.2 9.2e+02 -0.3 0.1 7 16 221 230 219 239 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 6 15 0.19 1.5e+02 2.2 6.1 7 26 249 268 247 269 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 7 15 0.46 3.6e+02 1.1 0.4 5 15 275 285 273 293 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 8 15 0.0033 2.5 7.9 0.7 7 24 305 322 303 324 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 9 15 0.9 7e+02 0.1 0.1 6 24 332 350 330 353 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 10 15 0.0033 2.6 7.9 0.0 5 24 359 378 358 381 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 11 15 1.9e-05 0.015 15.0 0.1 5 25 387 407 386 409 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 12 15 0.0039 3 7.7 0.4 6 23 416 433 414 436 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 13 15 0.001 0.78 9.6 0.3 7 23 541 557 538 559 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 14 15 0.0026 2 8.2 0.4 7 24 569 586 567 588 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-205 - 642 2.2e-07 30.5 72.4 15 15 0.43 3.4e+02 1.1 0.1 7 23 597 613 592 616 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 1 18 0.044 34 5.1 0.5 13 24 20 31 16 33 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 2 18 2.7e-05 0.021 15.2 1.0 11 26 80 95 77 95 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 3 18 4.9e-09 3.8e-06 27.1 0.9 2 24 99 121 98 121 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 4 18 4.8e-06 0.0037 17.6 0.1 2 24 127 149 127 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 5 18 1.1e-08 8.2e-06 26.0 0.1 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 6 18 7.8e-06 0.0061 16.9 1.0 2 25 183 206 183 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 7 18 8.1e-11 6.3e-08 32.7 0.4 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 8 18 2.1e-07 0.00016 21.9 0.9 5 25 242 262 238 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 9 18 5.8e-08 4.5e-05 23.7 0.5 2 25 267 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 10 18 4.8e-08 3.8e-05 23.9 2.6 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 11 18 1.7e-09 1.3e-06 28.5 0.1 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 12 18 2.9e-08 2.2e-05 24.6 0.1 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 13 18 1e-09 8e-07 29.2 1.0 1 25 378 402 378 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 14 18 0.17 1.3e+02 3.3 0.3 1 10 406 415 406 419 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 15 18 0.081 63 4.2 0.9 12 26 511 527 510 527 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 16 18 1.3e-07 0.0001 22.6 0.8 2 25 531 554 531 555 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 17 18 6.9e-10 5.4e-07 29.8 2.2 1 25 558 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-207 - 619 1.4e-87 284.5 113.2 18 18 0.037 29 5.3 0.0 1 12 586 597 586 605 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 1 16 0.0014 1.1 9.9 0.2 1 23 22 44 22 44 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 2 16 2.8e-06 0.0022 18.4 0.1 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 3 16 2.1e-06 0.0017 18.7 0.5 1 23 112 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 4 16 1.5e-05 0.011 16.1 0.6 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 5 16 4.3e-08 3.4e-05 24.1 0.4 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 6 16 2.3e-05 0.018 15.5 0.3 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 7 16 1.5e-06 0.0012 19.2 3.4 2 23 225 246 224 246 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 8 16 1.4e-07 0.00011 22.4 0.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 9 16 9.5e-08 7.4e-05 23.0 1.2 2 23 281 302 280 302 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 10 16 4.7e-07 0.00036 20.8 0.9 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 11 16 2.5e-06 0.0019 18.5 0.2 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 12 16 1.1e-06 0.00086 19.6 0.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 13 16 6.1e-07 0.00048 20.4 2.2 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 14 16 2.7e-06 0.0021 18.4 1.8 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 15 16 4.8e-08 3.7e-05 23.9 1.0 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-207 - 619 1.6e-73 239.2 108.6 16 16 3e-07 0.00023 21.4 1.5 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 1 16 0.006 4.7 8.3 0.1 1 23 22 44 22 45 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 2 16 0.00032 0.25 12.3 0.2 1 19 84 102 84 107 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 3 16 2.7e-06 0.0021 18.7 0.6 1 23 112 134 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 4 16 0.0074 5.8 8.0 0.6 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 5 16 1.7e-05 0.013 16.3 0.2 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 6 16 1.8e-05 0.014 16.2 0.3 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 7 16 7.1e-05 0.055 14.3 2.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 8 16 7.6e-06 0.0059 17.3 0.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 9 16 3.7e-07 0.00029 21.4 0.7 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 10 16 0.0004 0.31 12.0 0.7 1 23 308 330 308 331 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 11 16 6.8e-05 0.053 14.4 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 12 16 4.7e-05 0.037 14.9 0.4 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 13 16 2.2e-05 0.017 15.9 2.4 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 14 16 3.9e-06 0.003 18.2 1.1 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 15 16 7.2e-08 5.6e-05 23.6 0.7 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-207 - 619 2e-56 183.7 105.4 16 16 2e-07 0.00016 22.3 1.0 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 1 16 0.68 5.3e+02 1.1 0.2 2 13 22 33 21 34 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 2 16 0.01 8 6.9 0.0 2 20 84 102 83 106 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 3 16 1.9 1.5e+03 -0.3 0.0 2 11 112 121 111 121 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 4 16 0.27 2.1e+02 2.4 0.1 2 22 140 160 139 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 5 16 0.00015 0.11 12.8 0.0 2 24 168 190 167 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 6 16 0.0088 6.9 7.1 0.1 2 24 196 218 195 218 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 7 16 0.052 41 4.6 0.2 4 20 226 242 223 244 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 8 16 0.0002 0.15 12.3 0.0 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 9 16 0.0042 3.3 8.1 0.0 4 22 282 300 279 300 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 10 16 9.7 7.6e+03 -2.6 0.2 4 20 310 326 308 328 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 11 16 0.011 8.8 6.8 0.2 2 11 336 345 335 354 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 12 16 0.015 12 6.3 0.0 2 20 364 382 363 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 13 16 0.0039 3.1 8.2 0.3 2 24 392 414 391 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 14 16 2e-05 0.015 15.5 0.1 1 24 515 538 515 539 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 15 16 0.011 8.4 6.8 0.0 2 21 544 563 543 567 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-207 - 619 5.6e-29 99.8 42.4 16 16 1.6e-06 0.0012 19.1 0.0 2 24 572 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 1 15 0.16 1.2e+02 2.8 0.5 1 12 21 32 21 33 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 2 15 0.0061 4.7 7.3 0.1 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 3 15 0.0048 3.8 7.6 0.1 2 24 112 134 112 137 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 4 15 0.036 28 4.8 0.2 2 24 168 190 168 192 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 5 15 0.0015 1.2 9.3 0.5 2 24 196 218 196 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 6 15 0.00048 0.37 10.8 2.7 2 24 224 246 224 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 7 15 0.028 21 5.2 1.0 2 24 252 274 252 277 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 8 15 3.4 2.6e+03 -1.4 0.1 2 12 280 290 280 303 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 9 15 0.092 72 3.5 0.3 2 24 308 330 308 332 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 10 15 0.12 91 3.2 1.1 2 11 336 345 336 346 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 11 15 0.0033 2.6 8.2 0.4 2 25 364 387 364 389 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 12 15 0.00017 0.13 12.3 3.0 2 26 392 416 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 13 15 2.1e-05 0.016 15.2 0.3 2 25 516 539 515 540 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 14 15 3.4e-06 0.0027 17.7 0.7 2 26 544 568 544 569 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-207 - 619 4.2e-16 58.5 91.3 15 15 0.0048 3.8 7.6 0.2 2 24 572 594 572 595 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 1 15 0.32 2.5e+02 1.4 0.1 3 14 22 33 20 40 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 2 15 1.9 1.4e+03 -1.1 0.1 3 20 84 102 83 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 3 15 0.018 14 5.4 0.2 3 12 112 121 110 124 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 4 15 0.006 4.7 6.9 0.0 3 15 168 180 166 183 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 5 15 0.0034 2.6 7.7 0.1 3 20 196 214 194 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 6 15 0.00018 0.14 11.8 0.8 3 21 224 243 222 250 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 7 15 0.014 11 5.7 0.1 3 21 252 271 250 271 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 8 15 0.00059 0.46 10.1 0.1 3 20 280 298 278 299 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 9 15 0.021 17 5.1 0.2 3 17 308 323 306 327 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 10 15 0.08 62 3.3 0.0 3 20 336 354 334 355 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 11 15 0.017 13 5.5 0.1 3 20 364 382 363 383 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 12 15 0.16 1.2e+02 2.4 0.1 3 20 392 410 391 411 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 13 15 0.032 25 4.6 0.1 2 14 515 527 514 535 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 14 15 0.006 4.7 6.9 0.1 3 14 544 555 542 563 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-207 - 619 4e-14 51.9 54.7 15 15 0.017 14 5.4 0.2 3 21 572 591 570 591 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 1 15 8.7 6.7e+03 -2.3 0.1 1 12 22 33 22 40 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 2 15 0.12 97 3.6 0.0 1 24 84 105 84 106 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 3 15 0.13 98 3.5 0.0 3 23 114 134 112 135 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 4 15 0.0023 1.8 9.1 0.1 1 19 168 186 168 190 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 5 15 0.13 98 3.5 0.3 1 23 196 218 196 219 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 6 15 0.081 63 4.2 2.1 3 21 226 244 224 247 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 7 15 0.00013 0.1 13.1 0.2 1 21 252 272 252 274 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 8 15 0.0021 1.7 9.2 0.0 3 21 282 300 280 302 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 9 15 0.2 1.6e+02 2.9 0.1 1 19 308 326 308 330 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 10 15 2.5 2e+03 -0.6 0.2 6 19 341 354 336 355 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 11 15 0.81 6.3e+02 1.0 0.1 1 25 364 386 364 386 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 12 15 0.027 21 5.7 0.9 1 22 392 413 392 415 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 13 15 0.009 7 7.2 0.1 1 23 516 538 516 539 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 14 15 0.084 65 4.1 0.3 3 25 546 566 544 566 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-207 - 619 5.5e-09 36.1 62.5 15 15 0.04 31 5.1 0.1 1 21 572 592 572 594 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 1 16 0.094 73 3.6 0.2 6 16 22 32 21 54 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 2 16 0.92 7.1e+02 0.4 0.2 18 33 74 90 69 96 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 3 16 0.24 1.9e+02 2.3 4.0 6 34 84 119 83 123 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 4 16 0.5 3.9e+02 1.3 4.4 7 32 113 145 111 149 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 5 16 3 2.4e+03 -1.2 0.2 6 16 140 150 139 158 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 6 16 0.0014 1.1 9.4 2.5 6 35 168 204 167 208 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 7 16 0.026 20 5.4 3.8 6 38 196 235 195 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 8 16 0.00017 0.13 12.4 3.3 6 34 224 259 223 262 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 9 16 1.7e-05 0.013 15.6 2.1 6 34 252 287 251 291 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 10 16 0.0026 2 8.6 4.2 6 37 280 318 279 320 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 11 16 0.0052 4 7.6 0.6 6 16 308 318 305 333 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 12 16 0.19 1.5e+02 2.6 0.0 6 15 336 345 335 358 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 13 16 0.0043 3.3 7.9 0.2 6 21 364 379 363 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 14 16 0.013 10 6.4 0.1 6 20 392 406 391 414 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 15 16 0.027 21 5.4 3.5 6 33 516 550 515 551 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-207 - 619 2.7e-08 33.8 74.5 16 16 0.00078 0.61 10.3 1.1 6 32 544 577 540 581 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 1 15 2.8 2.2e+03 -1.5 0.1 5 12 22 29 22 40 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 2 15 0.033 26 4.7 0.2 7 24 114 131 112 132 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 3 15 2.8 2.2e+03 -1.5 0.1 5 11 140 146 140 158 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 4 15 0.037 29 4.5 0.1 7 25 170 188 167 190 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 5 15 1.1 8.8e+02 -0.2 0.1 7 16 198 207 196 216 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 6 15 0.19 1.5e+02 2.3 6.1 7 26 226 245 224 246 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 7 15 0.44 3.4e+02 1.1 0.4 5 15 252 262 250 270 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 8 15 0.0031 2.4 8.0 0.7 7 24 282 299 280 301 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 9 15 0.87 6.7e+02 0.2 0.1 6 24 309 327 307 330 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 10 15 0.0032 2.5 8.0 0.0 5 24 336 355 335 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 11 15 1.8e-05 0.014 15.1 0.1 5 25 364 384 363 386 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 12 15 0.0037 2.9 7.7 0.4 6 23 393 410 391 413 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 13 15 0.00096 0.75 9.6 0.3 7 23 518 534 515 536 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 14 15 0.0025 2 8.3 0.4 7 24 546 563 544 565 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-207 - 619 1.3e-07 31.2 72.4 15 15 0.41 3.2e+02 1.2 0.1 7 23 574 590 569 593 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:23 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 1 18 0.044 34 5.1 0.5 13 24 20 31 16 33 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 2 18 2.7e-05 0.021 15.2 1.0 11 26 80 95 77 95 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 3 18 4.9e-09 3.8e-06 27.1 0.9 2 24 99 121 98 121 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 4 18 4.8e-06 0.0037 17.6 0.1 2 24 127 149 127 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 5 18 1.1e-08 8.2e-06 26.0 0.1 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 6 18 7.8e-06 0.0061 16.9 1.0 2 25 183 206 183 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 7 18 8.1e-11 6.3e-08 32.7 0.4 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 8 18 2.1e-07 0.00016 21.9 0.9 5 25 242 262 238 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 9 18 5.8e-08 4.5e-05 23.7 0.5 2 25 267 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 10 18 4.8e-08 3.8e-05 23.9 2.6 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 11 18 1.7e-09 1.3e-06 28.5 0.1 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 12 18 2.9e-08 2.2e-05 24.6 0.1 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 13 18 1e-09 8e-07 29.2 1.0 1 25 378 402 378 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 14 18 0.17 1.3e+02 3.3 0.3 1 10 406 415 406 419 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 15 18 0.081 63 4.2 0.9 12 26 511 527 510 527 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 16 18 1.3e-07 0.0001 22.6 0.8 2 25 531 554 531 555 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 17 18 6.9e-10 5.4e-07 29.8 2.2 1 25 558 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-208 - 619 1.4e-87 284.5 113.2 18 18 0.037 29 5.3 0.0 1 12 586 597 586 605 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 1 16 0.0014 1.1 9.9 0.2 1 23 22 44 22 44 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 2 16 2.8e-06 0.0022 18.4 0.1 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 3 16 2.1e-06 0.0017 18.7 0.5 1 23 112 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 4 16 1.5e-05 0.011 16.1 0.6 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 5 16 4.3e-08 3.4e-05 24.1 0.4 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 6 16 2.3e-05 0.018 15.5 0.3 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 7 16 1.5e-06 0.0012 19.2 3.4 2 23 225 246 224 246 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 8 16 1.4e-07 0.00011 22.4 0.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 9 16 9.5e-08 7.4e-05 23.0 1.2 2 23 281 302 280 302 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 10 16 4.7e-07 0.00036 20.8 0.9 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 11 16 2.5e-06 0.0019 18.5 0.2 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 12 16 1.1e-06 0.00086 19.6 0.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 13 16 6.1e-07 0.00048 20.4 2.2 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 14 16 2.7e-06 0.0021 18.4 1.8 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 15 16 4.8e-08 3.7e-05 23.9 1.0 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-208 - 619 1.6e-73 239.2 108.6 16 16 3e-07 0.00023 21.4 1.5 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 1 16 0.006 4.7 8.3 0.1 1 23 22 44 22 45 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 2 16 0.00032 0.25 12.3 0.2 1 19 84 102 84 107 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 3 16 2.7e-06 0.0021 18.7 0.6 1 23 112 134 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 4 16 0.0074 5.8 8.0 0.6 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 5 16 1.7e-05 0.013 16.3 0.2 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 6 16 1.8e-05 0.014 16.2 0.3 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 7 16 7.1e-05 0.055 14.3 2.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 8 16 7.6e-06 0.0059 17.3 0.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 9 16 3.7e-07 0.00029 21.4 0.7 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 10 16 0.0004 0.31 12.0 0.7 1 23 308 330 308 331 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 11 16 6.8e-05 0.053 14.4 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 12 16 4.7e-05 0.037 14.9 0.4 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 13 16 2.2e-05 0.017 15.9 2.4 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 14 16 3.9e-06 0.003 18.2 1.1 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 15 16 7.2e-08 5.6e-05 23.6 0.7 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-208 - 619 2e-56 183.7 105.4 16 16 2e-07 0.00016 22.3 1.0 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 1 16 0.68 5.3e+02 1.1 0.2 2 13 22 33 21 34 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 2 16 0.01 8 6.9 0.0 2 20 84 102 83 106 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 3 16 1.9 1.5e+03 -0.3 0.0 2 11 112 121 111 121 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 4 16 0.27 2.1e+02 2.4 0.1 2 22 140 160 139 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 5 16 0.00015 0.11 12.8 0.0 2 24 168 190 167 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 6 16 0.0088 6.9 7.1 0.1 2 24 196 218 195 218 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 7 16 0.052 41 4.6 0.2 4 20 226 242 223 244 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 8 16 0.0002 0.15 12.3 0.0 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 9 16 0.0042 3.3 8.1 0.0 4 22 282 300 279 300 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 10 16 9.7 7.6e+03 -2.6 0.2 4 20 310 326 308 328 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 11 16 0.011 8.8 6.8 0.2 2 11 336 345 335 354 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 12 16 0.015 12 6.3 0.0 2 20 364 382 363 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 13 16 0.0039 3.1 8.2 0.3 2 24 392 414 391 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 14 16 2e-05 0.015 15.5 0.1 1 24 515 538 515 539 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 15 16 0.011 8.4 6.8 0.0 2 21 544 563 543 567 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-208 - 619 5.6e-29 99.8 42.4 16 16 1.6e-06 0.0012 19.1 0.0 2 24 572 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 1 15 0.16 1.2e+02 2.8 0.5 1 12 21 32 21 33 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 2 15 0.0061 4.7 7.3 0.1 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 3 15 0.0048 3.8 7.6 0.1 2 24 112 134 112 137 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 4 15 0.036 28 4.8 0.2 2 24 168 190 168 192 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 5 15 0.0015 1.2 9.3 0.5 2 24 196 218 196 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 6 15 0.00048 0.37 10.8 2.7 2 24 224 246 224 249 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 7 15 0.028 21 5.2 1.0 2 24 252 274 252 277 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 8 15 3.4 2.6e+03 -1.4 0.1 2 12 280 290 280 303 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 9 15 0.092 72 3.5 0.3 2 24 308 330 308 332 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 10 15 0.12 91 3.2 1.1 2 11 336 345 336 346 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 11 15 0.0033 2.6 8.2 0.4 2 25 364 387 364 389 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 12 15 0.00017 0.13 12.3 3.0 2 26 392 416 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 13 15 2.1e-05 0.016 15.2 0.3 2 25 516 539 515 540 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 14 15 3.4e-06 0.0027 17.7 0.7 2 26 544 568 544 569 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-208 - 619 4.2e-16 58.5 91.3 15 15 0.0048 3.8 7.6 0.2 2 24 572 594 572 595 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 1 15 0.32 2.5e+02 1.4 0.1 3 14 22 33 20 40 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 2 15 1.9 1.4e+03 -1.1 0.1 3 20 84 102 83 102 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 3 15 0.018 14 5.4 0.2 3 12 112 121 110 124 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 4 15 0.006 4.7 6.9 0.0 3 15 168 180 166 183 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 5 15 0.0034 2.6 7.7 0.1 3 20 196 214 194 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 6 15 0.00018 0.14 11.8 0.8 3 21 224 243 222 250 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 7 15 0.014 11 5.7 0.1 3 21 252 271 250 271 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 8 15 0.00059 0.46 10.1 0.1 3 20 280 298 278 299 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 9 15 0.021 17 5.1 0.2 3 17 308 323 306 327 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 10 15 0.08 62 3.3 0.0 3 20 336 354 334 355 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 11 15 0.017 13 5.5 0.1 3 20 364 382 363 383 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 12 15 0.16 1.2e+02 2.4 0.1 3 20 392 410 391 411 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 13 15 0.032 25 4.6 0.1 2 14 515 527 514 535 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 14 15 0.006 4.7 6.9 0.1 3 14 544 555 542 563 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-208 - 619 4e-14 51.9 54.7 15 15 0.017 14 5.4 0.2 3 21 572 591 570 591 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 1 15 8.7 6.7e+03 -2.3 0.1 1 12 22 33 22 40 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 2 15 0.12 97 3.6 0.0 1 24 84 105 84 106 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 3 15 0.13 98 3.5 0.0 3 23 114 134 112 135 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 4 15 0.0023 1.8 9.1 0.1 1 19 168 186 168 190 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 5 15 0.13 98 3.5 0.3 1 23 196 218 196 219 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 6 15 0.081 63 4.2 2.1 3 21 226 244 224 247 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 7 15 0.00013 0.1 13.1 0.2 1 21 252 272 252 274 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 8 15 0.0021 1.7 9.2 0.0 3 21 282 300 280 302 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 9 15 0.2 1.6e+02 2.9 0.1 1 19 308 326 308 330 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 10 15 2.5 2e+03 -0.6 0.2 6 19 341 354 336 355 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 11 15 0.81 6.3e+02 1.0 0.1 1 25 364 386 364 386 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 12 15 0.027 21 5.7 0.9 1 22 392 413 392 415 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 13 15 0.009 7 7.2 0.1 1 23 516 538 516 539 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 14 15 0.084 65 4.1 0.3 3 25 546 566 544 566 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-208 - 619 5.5e-09 36.1 62.5 15 15 0.04 31 5.1 0.1 1 21 572 592 572 594 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 1 16 0.094 73 3.6 0.2 6 16 22 32 21 54 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 2 16 0.92 7.1e+02 0.4 0.2 18 33 74 90 69 96 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 3 16 0.24 1.9e+02 2.3 4.0 6 34 84 119 83 123 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 4 16 0.5 3.9e+02 1.3 4.4 7 32 113 145 111 149 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 5 16 3 2.4e+03 -1.2 0.2 6 16 140 150 139 158 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 6 16 0.0014 1.1 9.4 2.5 6 35 168 204 167 208 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 7 16 0.026 20 5.4 3.8 6 38 196 235 195 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 8 16 0.00017 0.13 12.4 3.3 6 34 224 259 223 262 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 9 16 1.7e-05 0.013 15.6 2.1 6 34 252 287 251 291 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 10 16 0.0026 2 8.6 4.2 6 37 280 318 279 320 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 11 16 0.0052 4 7.6 0.6 6 16 308 318 305 333 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 12 16 0.19 1.5e+02 2.6 0.0 6 15 336 345 335 358 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 13 16 0.0043 3.3 7.9 0.2 6 21 364 379 363 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 14 16 0.013 10 6.4 0.1 6 20 392 406 391 414 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 15 16 0.027 21 5.4 3.5 6 33 516 550 515 551 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-208 - 619 2.7e-08 33.8 74.5 16 16 0.00078 0.61 10.3 1.1 6 32 544 577 540 581 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 1 15 2.8 2.2e+03 -1.5 0.1 5 12 22 29 22 40 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 2 15 0.033 26 4.7 0.2 7 24 114 131 112 132 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 3 15 2.8 2.2e+03 -1.5 0.1 5 11 140 146 140 158 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 4 15 0.037 29 4.5 0.1 7 25 170 188 167 190 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 5 15 1.1 8.8e+02 -0.2 0.1 7 16 198 207 196 216 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 6 15 0.19 1.5e+02 2.3 6.1 7 26 226 245 224 246 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 7 15 0.44 3.4e+02 1.1 0.4 5 15 252 262 250 270 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 8 15 0.0031 2.4 8.0 0.7 7 24 282 299 280 301 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 9 15 0.87 6.7e+02 0.2 0.1 6 24 309 327 307 330 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 10 15 0.0032 2.5 8.0 0.0 5 24 336 355 335 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 11 15 1.8e-05 0.014 15.1 0.1 5 25 364 384 363 386 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 12 15 0.0037 2.9 7.7 0.4 6 23 393 410 391 413 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 13 15 0.00096 0.75 9.6 0.3 7 23 518 534 515 536 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 14 15 0.0025 2 8.3 0.4 7 24 546 563 544 565 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-208 - 619 1.3e-07 31.2 72.4 15 15 0.41 3.2e+02 1.2 0.1 7 23 574 590 569 593 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 1 18 0.052 41 4.9 0.7 13 24 43 54 38 56 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 2 18 2.8e-05 0.022 15.2 1.0 11 26 103 118 100 118 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 3 18 5.1e-09 4e-06 27.0 0.9 2 24 122 144 121 144 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 4 18 5e-06 0.0039 17.6 0.1 2 24 150 172 150 174 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 5 18 1.1e-08 8.6e-06 26.0 0.1 2 25 178 201 177 202 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 6 18 8.1e-06 0.0064 16.9 1.0 2 25 206 229 206 230 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 7 18 8.5e-11 6.6e-08 32.6 0.4 1 25 233 257 233 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 8 18 2.2e-07 0.00017 21.9 0.9 5 25 265 285 261 286 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 9 18 6e-08 4.7e-05 23.6 0.5 2 25 290 313 289 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 10 18 5e-08 3.9e-05 23.9 2.6 2 25 318 341 317 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 11 18 1.8e-09 1.4e-06 28.5 0.1 2 25 346 369 345 370 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 12 18 3e-08 2.3e-05 24.6 0.1 1 25 373 397 373 398 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 13 18 1.1e-09 8.4e-07 29.2 1.0 1 25 401 425 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 14 18 0.17 1.4e+02 3.2 0.3 1 10 429 438 429 442 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 15 18 0.085 66 4.2 0.9 12 26 534 550 533 550 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 16 18 1.3e-07 0.0001 22.5 0.8 2 25 554 577 554 578 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 17 18 7.2e-10 5.6e-07 29.7 2.2 1 25 581 605 581 606 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF668-209 - 642 4.5e-87 282.9 113.8 18 18 0.039 30 5.3 0.0 1 12 609 620 609 628 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 1 16 0.0015 1.1 9.8 0.2 1 23 45 67 45 67 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 2 16 2.9e-06 0.0023 18.3 0.1 1 23 107 129 107 129 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 3 16 2.2e-06 0.0017 18.7 0.5 1 23 135 157 135 157 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 4 16 1.5e-05 0.012 16.0 0.6 1 23 163 185 163 185 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 5 16 4.5e-08 3.5e-05 24.0 0.4 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 6 16 2.4e-05 0.019 15.4 0.3 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 7 16 1.6e-06 0.0012 19.1 3.4 2 23 248 269 247 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 8 16 1.5e-07 0.00012 22.4 0.7 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 9 16 9.9e-08 7.7e-05 22.9 1.2 2 23 304 325 303 325 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 10 16 4.9e-07 0.00038 20.8 0.9 1 23 331 353 331 353 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 11 16 2.6e-06 0.002 18.5 0.2 1 23 359 381 359 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 12 16 1.1e-06 0.0009 19.6 0.2 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 13 16 6.4e-07 0.0005 20.4 2.2 1 23 415 437 415 437 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 14 16 2.8e-06 0.0022 18.3 1.8 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 15 16 5e-08 3.9e-05 23.9 1.0 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF668-209 - 642 3.2e-73 238.3 108.6 16 16 3.1e-07 0.00024 21.4 1.5 1 23 595 617 595 617 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 1 16 0.0063 4.9 8.3 0.1 1 23 45 67 45 68 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 2 16 0.00034 0.26 12.2 0.2 1 19 107 125 107 130 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 3 16 2.9e-06 0.0022 18.7 0.6 1 23 135 157 135 158 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 4 16 0.0077 6 8.0 0.6 1 23 163 185 163 186 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 5 16 1.8e-05 0.014 16.2 0.2 1 23 191 213 191 214 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 6 16 1.9e-05 0.015 16.1 0.3 1 23 219 241 219 242 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 7 16 7.4e-05 0.058 14.3 2.7 1 23 247 269 247 270 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 8 16 7.9e-06 0.0062 17.3 0.6 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 9 16 3.9e-07 0.0003 21.4 0.7 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 10 16 0.00042 0.33 11.9 0.7 1 23 331 353 331 354 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 11 16 7.1e-05 0.056 14.3 0.5 1 23 359 381 359 382 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 12 16 4.9e-05 0.038 14.8 0.4 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 13 16 2.3e-05 0.018 15.8 2.4 1 23 415 437 415 438 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 14 16 4.1e-06 0.0032 18.2 1.1 1 23 539 561 539 562 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 15 16 7.5e-08 5.8e-05 23.6 0.7 1 23 567 589 567 590 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF668-209 - 642 4e-56 182.8 105.4 16 16 2.1e-07 0.00016 22.2 1.0 1 23 595 617 595 618 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 1 15 0.7 5.5e+02 1.0 0.2 2 13 45 56 44 57 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 2 15 0.011 8.4 6.8 0.0 2 20 107 125 106 129 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 3 15 1.9 1.5e+03 -0.4 0.0 2 11 135 144 134 144 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 4 15 0.28 2.2e+02 2.3 0.1 2 22 163 183 162 185 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 5 15 0.00015 0.12 12.7 0.0 2 24 191 213 190 214 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 6 15 0.0092 7.2 7.0 0.1 2 24 219 241 218 241 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 7 15 0.054 42 4.6 0.2 4 20 249 265 246 267 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 8 15 0.00021 0.16 12.3 0.0 2 24 275 297 274 298 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 9 15 0.0044 3.4 8.1 0.0 4 22 305 323 302 323 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 10 15 0.012 9.2 6.7 0.2 2 11 359 368 358 377 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 11 15 0.016 12 6.3 0.0 2 20 387 405 386 406 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 12 15 0.0041 3.2 8.2 0.3 2 24 415 437 414 438 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 13 15 2.1e-05 0.016 15.5 0.1 1 24 538 561 538 562 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 14 15 0.011 8.7 6.8 0.0 2 21 567 586 566 590 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF668-209 - 642 1e-28 98.9 42.4 15 15 1.6e-06 0.0013 19.0 0.0 2 24 595 617 594 618 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 1 15 0.16 1.3e+02 2.8 0.5 1 12 44 55 44 56 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 2 15 0.0063 4.9 7.3 0.1 2 24 107 129 107 132 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 3 15 0.005 3.9 7.6 0.1 2 24 135 157 135 160 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 4 15 0.038 29 4.8 0.2 2 24 191 213 191 215 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 5 15 0.0016 1.2 9.2 0.5 2 24 219 241 219 244 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 6 15 0.0005 0.39 10.8 2.7 2 24 247 269 247 272 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 7 15 0.029 22 5.2 1.0 2 24 275 297 275 300 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 8 15 3.5 2.7e+03 -1.5 0.1 2 12 303 313 303 326 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 9 15 0.096 75 3.5 0.3 2 24 331 353 331 355 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 10 15 0.12 94 3.2 1.1 2 11 359 368 359 369 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 11 15 0.0034 2.7 8.1 0.4 2 25 387 410 387 412 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 12 15 0.00017 0.14 12.2 3.0 2 26 415 439 415 440 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 13 15 2.2e-05 0.017 15.1 0.3 2 25 539 562 538 563 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 14 15 3.6e-06 0.0028 17.6 0.7 2 26 567 591 567 592 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF668-209 - 642 7.9e-16 57.6 91.3 15 15 0.0051 3.9 7.6 0.2 2 24 595 617 595 618 0.96 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 1 15 0.33 2.6e+02 1.3 0.1 3 14 45 56 43 63 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 2 15 1.9 1.5e+03 -1.1 0.1 3 20 107 125 106 125 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 3 15 0.018 14 5.3 0.2 3 12 135 144 133 147 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 4 15 0.0062 4.9 6.8 0.0 3 15 191 203 189 206 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 5 15 0.0035 2.7 7.6 0.1 3 20 219 237 217 238 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 6 15 0.00019 0.15 11.7 0.8 3 21 247 266 245 273 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 7 15 0.015 12 5.6 0.1 3 21 275 294 273 294 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 8 15 0.00062 0.48 10.1 0.1 3 20 303 321 301 322 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 9 15 0.022 17 5.1 0.2 3 17 331 346 329 350 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 10 15 0.083 65 3.2 0.0 3 20 359 377 357 378 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 11 15 0.017 14 5.4 0.1 3 20 387 405 386 406 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 12 15 0.16 1.3e+02 2.3 0.1 3 20 415 433 414 434 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 13 15 0.034 26 4.5 0.1 2 14 538 550 537 558 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 14 15 0.0063 4.9 6.8 0.1 3 14 567 578 565 586 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF668-209 - 642 7.3e-14 51.1 54.7 15 15 0.018 14 5.4 0.2 3 21 595 614 593 614 0.88 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 1 15 9 7e+03 -2.3 0.1 1 12 45 56 45 63 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 2 15 0.13 1e+02 3.5 0.0 1 24 107 128 107 129 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 3 15 0.13 1e+02 3.5 0.0 3 23 137 157 135 158 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 4 15 0.0024 1.9 9.0 0.1 1 19 191 209 191 213 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 5 15 0.13 1e+02 3.5 0.3 1 23 219 241 219 242 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 6 15 0.084 66 4.1 2.1 3 21 249 267 247 270 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 7 15 0.00013 0.1 13.0 0.2 1 21 275 295 275 297 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 8 15 0.0022 1.7 9.1 0.0 3 21 305 323 303 325 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 9 15 0.21 1.7e+02 2.8 0.1 1 19 331 349 331 353 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 10 15 2.7 2.1e+03 -0.7 0.2 6 19 364 377 359 378 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 11 15 0.84 6.6e+02 0.9 0.1 1 25 387 409 387 409 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 12 15 0.029 22 5.6 0.9 1 22 415 436 415 438 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 13 15 0.0094 7.3 7.1 0.1 1 23 539 561 539 562 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 14 15 0.087 68 4.1 0.3 3 25 569 589 567 589 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF668-209 - 642 9.9e-09 35.3 62.5 15 15 0.042 33 5.1 0.1 1 21 595 615 595 617 0.93 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 1 15 0.098 76 3.5 0.2 6 16 45 55 44 77 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 2 15 0.95 7.4e+02 0.4 0.2 18 33 97 113 92 119 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 3 15 0.24 1.8e+02 2.3 4.0 6 34 107 142 106 146 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 4 15 0.32 2.5e+02 1.9 3.9 7 32 136 168 133 178 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 5 15 0.0013 1 9.6 2.3 6 35 191 227 190 231 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 6 15 0.018 14 5.9 3.2 6 38 219 258 216 259 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 7 15 6.9e-05 0.054 13.6 2.6 6 34 247 282 246 288 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 8 15 1.5e-05 0.012 15.8 1.9 6 34 275 310 274 314 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 9 15 0.0025 2 8.6 4.1 6 37 303 341 302 343 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 10 15 0.0054 4.2 7.6 0.6 6 16 331 341 328 356 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 11 15 0.2 1.5e+02 2.6 0.0 6 15 359 368 358 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 12 15 0.0044 3.5 7.8 0.2 6 21 387 402 386 409 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 13 15 0.013 11 6.3 0.1 6 20 415 429 414 437 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 14 15 0.029 23 5.2 3.6 6 33 539 573 538 574 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF668-209 - 642 3e-08 33.6 73.9 15 15 0.00086 0.67 10.1 1.2 6 32 567 600 563 604 0.71 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 1 15 2.9 2.3e+03 -1.5 0.1 5 12 45 52 45 63 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 2 15 0.034 27 4.6 0.2 7 24 137 154 135 155 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 3 15 2.9 2.3e+03 -1.5 0.1 5 11 163 169 163 181 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 4 15 0.039 30 4.5 0.1 7 25 193 211 190 213 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 5 15 1.2 9.2e+02 -0.3 0.1 7 16 221 230 219 239 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 6 15 0.19 1.5e+02 2.2 6.1 7 26 249 268 247 269 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 7 15 0.46 3.6e+02 1.1 0.4 5 15 275 285 273 293 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 8 15 0.0033 2.5 7.9 0.7 7 24 305 322 303 324 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 9 15 0.9 7e+02 0.1 0.1 6 24 332 350 330 353 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 10 15 0.0033 2.6 7.9 0.0 5 24 359 378 358 381 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 11 15 1.9e-05 0.015 15.0 0.1 5 25 387 407 386 409 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 12 15 0.0039 3 7.7 0.4 6 23 416 433 414 436 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 13 15 0.001 0.78 9.6 0.3 7 23 541 557 538 559 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 14 15 0.0026 2 8.2 0.4 7 24 569 586 567 588 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF668-209 - 642 2.2e-07 30.5 72.4 15 15 0.43 3.4e+02 1.1 0.1 7 23 597 613 592 616 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 1 15 0.0013 1.7 9.2 0.7 13 24 12 23 11 23 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 2 15 0.0038 4.8 7.8 0.2 2 23 29 50 29 53 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 3 15 2.4e-06 0.0031 17.9 0.2 1 26 56 81 56 81 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 4 15 3.2 4.1e+03 -1.5 1.1 17 24 99 108 87 110 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 5 15 2.3e-06 0.003 17.9 0.2 2 25 114 138 113 139 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 6 15 0.019 25 5.5 0.1 5 25 145 173 141 174 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 7 15 0.00062 0.8 10.3 0.4 1 25 177 209 177 210 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 8 15 2.5e-11 3.2e-08 33.6 0.7 2 24 214 236 213 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 9 15 9e-10 1.2e-06 28.7 0.8 2 25 242 265 241 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 10 15 2.2e-08 2.8e-05 24.4 0.3 2 25 270 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 11 15 6.9e-11 8.8e-08 32.2 0.1 1 25 297 321 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 12 15 1.1e-11 1.4e-08 34.7 3.9 1 25 325 349 325 350 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 13 15 3.4e-09 4.4e-06 26.9 3.4 1 25 353 377 353 377 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 14 15 1e-06 0.0013 19.1 2.1 2 26 382 406 381 406 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF672-201 - 452 9e-63 206.1 97.0 15 15 1.8 2.3e+03 -0.7 0.2 1 10 409 418 409 421 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 1 14 1.2e-06 0.0016 18.8 2.2 1 23 14 36 14 36 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 2 14 1e-06 0.0013 19.1 0.7 1 23 42 64 42 64 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 3 14 0.00011 0.14 12.7 0.3 1 21 70 90 70 92 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 4 14 7.8e-05 0.099 13.1 3.6 2 23 100 122 98 122 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 5 14 0.003 3.8 8.2 0.3 2 22 129 148 129 150 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 6 14 2.1e-05 0.027 14.9 0.3 1 23 163 185 163 185 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 7 14 1.5e-07 0.00019 21.7 3.9 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 8 14 7.8e-07 0.001 19.4 0.2 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 9 14 4.2e-08 5.3e-05 23.4 2.2 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 10 14 3.5e-07 0.00045 20.5 0.2 2 23 284 305 283 305 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 11 14 1e-09 1.3e-06 28.5 1.1 1 23 311 333 311 333 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 12 14 6.1e-06 0.0078 16.6 3.2 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 13 14 6.1e-07 0.00078 19.8 1.2 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF672-201 - 452 7.6e-57 186.7 110.2 14 14 3.6e-06 0.0046 17.3 3.8 2 23 396 417 396 417 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 1 14 4.3e-06 0.0055 17.4 1.8 1 23 14 36 14 37 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 2 14 0.00013 0.17 12.8 0.4 1 23 42 64 42 65 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 3 14 0.00034 0.43 11.5 0.4 1 23 70 92 70 93 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 4 14 0.0048 6.2 8.0 2.9 2 24 100 122 98 122 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 5 14 0.00035 0.45 11.5 0.5 2 24 129 150 128 150 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 6 14 0.00017 0.21 12.5 0.3 1 23 163 185 163 186 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 7 14 2.9e-05 0.038 14.8 3.5 1 23 199 221 199 222 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 8 14 6.1e-07 0.00078 20.1 0.3 1 23 227 249 227 250 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 9 14 3.2e-06 0.0041 17.8 1.8 1 23 255 277 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 10 14 0.0025 3.2 8.8 0.2 2 23 284 305 283 306 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 11 14 5.8e-08 7.4e-05 23.3 0.6 1 23 311 333 311 334 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 12 14 6.2e-07 0.00079 20.1 1.8 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 13 14 6.4e-05 0.082 13.8 1.4 1 23 367 389 367 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF672-201 - 452 3.1e-41 136.5 106.2 14 14 0.00058 0.75 10.8 3.9 2 23 396 417 396 418 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 1 13 0.21 2.7e+02 2.0 0.3 2 20 14 32 13 34 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 2 13 0.0058 7.4 7.0 0.0 2 24 42 64 41 65 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 3 13 4.1 5.3e+03 -2.1 0.1 2 20 70 88 70 89 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 4 13 0.031 40 4.6 0.0 4 11 130 137 128 142 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 5 13 0.73 9.3e+02 0.3 0.0 2 20 163 181 162 181 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 6 13 0.033 42 4.6 1.2 4 24 201 221 199 222 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 7 13 4.6e-05 0.06 13.7 0.0 2 24 227 249 226 249 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 8 13 0.02 25 5.3 0.1 2 25 255 278 254 278 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 9 13 0.049 62 4.0 0.0 2 22 283 303 282 303 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 10 13 6e-05 0.077 13.3 0.0 2 24 311 333 310 333 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 11 13 0.025 32 5.0 2.2 2 26 339 367 338 368 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 12 13 0.0059 7.6 6.9 0.3 2 24 367 389 366 390 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF672-201 - 452 2.2e-14 53.3 40.3 13 13 0.094 1.2e+02 3.1 1.4 4 22 397 415 396 415 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 1 15 0.0036 4.6 7.4 2.6 2 13 14 25 14 36 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 2 15 0.0027 3.4 7.8 0.3 1 24 41 64 41 67 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 3 15 0.0017 2.2 8.4 0.3 2 12 70 80 69 81 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 4 15 8.3 1.1e+04 -3.4 0.0 17 22 89 95 89 96 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 5 15 0.00022 0.28 11.2 0.0 4 25 101 123 100 125 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 6 15 0.29 3.7e+02 1.3 0.1 3 12 129 138 128 139 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 7 15 0.00011 0.15 12.1 0.1 2 22 163 183 163 187 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 8 15 0.061 78 3.4 3.9 1 25 198 222 198 224 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 9 15 0.005 6.4 6.9 0.3 2 11 227 236 227 237 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 10 15 0.99 1.3e+03 -0.4 0.3 19 25 272 278 255 280 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 11 15 0.031 40 4.4 0.1 2 12 283 293 283 294 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 12 15 1e-05 0.013 15.5 0.1 2 24 311 333 311 336 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 13 15 6.6e-05 0.085 12.9 1.2 2 24 339 361 339 363 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 14 15 0.00016 0.21 11.6 1.2 2 25 367 390 367 392 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF672-201 - 452 1.1e-13 50.8 90.5 15 15 0.41 5.2e+02 0.8 4.8 3 24 396 417 396 419 0.85 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 1 14 0.06 77 3.2 2.2 7 23 16 32 13 34 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 2 14 0.024 30 4.5 0.8 5 24 42 61 40 63 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 3 14 0.39 5e+02 0.6 0.8 7 23 72 88 70 90 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 4 14 0.066 84 3.1 5.1 4 24 98 118 96 122 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 5 14 4.4 5.6e+03 -2.8 0.2 6 14 129 137 128 137 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 6 14 0.0032 4.1 7.3 0.6 5 26 163 184 162 185 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 7 14 2.4e-05 0.03 14.1 3.8 4 25 198 219 196 221 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 8 14 0.026 33 4.4 0.0 5 24 227 246 224 248 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 9 14 1.4e-05 0.018 14.8 2.1 7 25 257 275 254 276 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 10 14 1.4 1.8e+03 -1.2 0.1 7 14 285 292 282 304 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 11 14 0.00079 1 9.2 0.2 7 25 313 331 310 333 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 12 14 0.00085 1.1 9.1 0.3 5 25 339 359 336 360 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 13 14 0.13 1.7e+02 2.1 0.3 5 24 367 386 364 389 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF672-201 - 452 2.2e-07 30.5 96.2 14 14 7.9e-06 0.01 15.6 2.1 7 24 397 414 394 416 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 1 18 2.8e-05 0.03 14.8 0.2 3 17 153 167 153 169 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 2 18 0.05 53 4.5 0.7 16 25 196 205 186 206 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 3 18 3e-11 3.2e-08 33.6 1.9 1 24 209 232 209 233 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 4 18 3.7e-06 0.0039 17.6 5.9 3 25 239 261 238 262 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 5 18 1.9e-08 2e-05 24.8 2.0 2 25 266 289 266 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 6 18 3.7e-10 3.9e-07 30.2 1.9 1 25 293 317 293 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 7 18 2.3e-11 2.4e-08 34.0 0.8 1 26 321 346 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 8 18 1.1e-11 1.2e-08 35.0 0.5 4 25 352 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 9 18 1.2e-08 1.3e-05 25.4 3.7 2 25 378 401 377 402 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 10 18 1.1e-11 1.1e-08 35.1 0.6 2 24 406 428 405 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 11 18 3.6e-08 3.7e-05 23.9 1.3 1 25 433 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 12 18 3.6e-09 3.8e-06 27.1 0.7 2 25 462 485 461 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 13 18 1.7e-11 1.8e-08 34.4 0.4 1 25 489 513 489 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 14 18 3.3e-12 3.5e-09 36.7 2.0 1 24 517 540 517 542 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 15 18 7.8e-13 8.2e-10 38.7 1.6 1 26 545 570 545 570 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 16 18 4.7e-10 5e-07 29.9 1.1 2 25 574 597 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 17 18 1.7e-12 1.8e-09 37.6 3.1 2 25 602 625 601 626 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-201 - 642 2.8e-123 397.4 146.3 18 18 0.017 18 6.0 0.5 2 13 630 641 629 642 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 1 17 1.8 1.9e+03 -0.3 0.3 14 19 154 159 143 161 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 2 17 8.9e-08 9.3e-05 22.7 4.8 2 23 196 217 195 217 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 3 17 6.4e-05 0.068 13.7 4.1 1 22 223 244 223 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 4 17 4.5e-05 0.047 14.1 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 5 17 7.1e-06 0.0075 16.7 2.0 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 6 17 3.3e-06 0.0035 17.7 2.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 7 17 8.6e-10 9e-07 29.0 0.5 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 8 17 4.3e-08 4.6e-05 23.6 0.3 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 9 17 9.1e-07 0.00096 19.5 2.5 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 10 17 0.00011 0.12 12.9 0.1 1 21 419 439 419 440 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 11 17 3.9e-06 0.0042 17.5 1.4 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 12 17 4.2e-10 4.5e-07 30.0 1.4 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 13 17 3.5e-10 3.7e-07 30.2 1.0 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 14 17 1.4e-09 1.4e-06 28.4 0.4 1 23 531 553 531 553 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 15 17 1.1e-08 1.2e-05 25.5 1.8 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 16 17 7.5e-06 0.0079 16.6 2.3 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-201 - 642 3.9e-76 247.5 141.8 17 17 1.7e-05 0.018 15.5 1.9 1 23 615 637 615 637 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 1 17 0.15 1.5e+02 3.6 0.4 5 23 142 159 141 160 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 2 17 6.7e-05 0.07 14.0 4.6 2 23 196 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 3 17 0.00034 0.36 11.8 3.4 1 22 223 244 223 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 4 17 8.1e-06 0.0085 16.8 2.9 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 5 17 9.6e-06 0.01 16.6 2.2 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 6 17 2.4e-06 0.0025 18.5 3.1 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 7 17 2.3e-06 0.0024 18.6 0.5 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 8 17 0.00023 0.24 12.3 0.5 1 19 363 381 363 386 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 9 17 9.4e-07 0.00099 19.8 2.1 1 23 391 413 391 414 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 10 17 0.00095 1 10.4 0.1 1 22 419 440 419 442 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 11 17 1e-06 0.0011 19.7 1.7 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 12 17 2.9e-07 0.0003 21.3 1.2 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 13 17 2.2e-06 0.0023 18.6 0.9 1 23 503 525 503 526 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 14 17 1.7e-06 0.0018 18.9 0.3 1 23 531 553 531 554 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 15 17 0.00027 0.28 12.1 1.5 1 23 559 581 559 582 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 16 17 1.2e-06 0.0012 19.5 2.8 1 23 587 609 587 610 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-201 - 642 4.6e-57 185.7 141.4 17 17 1.1e-06 0.0011 19.6 2.1 1 23 615 637 615 638 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF699-201 - 642 9e-26 89.3 1.1 1 1 1.6e-28 1.7e-25 88.4 1.1 1 42 18 59 18 59 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 1 16 5.7e-05 0.06 13.7 2.0 4 24 197 217 196 217 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 2 16 2.6 2.7e+03 -1.2 2.8 4 12 225 233 222 244 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 3 16 0.025 26 5.3 1.9 2 22 251 271 250 271 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 4 16 0.0025 2.6 8.4 0.6 2 22 279 299 278 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 5 16 0.0081 8.5 6.8 0.6 2 22 307 327 306 327 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 6 16 0.00031 0.33 11.3 0.1 2 22 335 355 334 355 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 7 16 0.0041 4.4 7.7 0.1 2 20 363 381 362 385 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 8 16 0.16 1.7e+02 2.6 1.0 2 22 391 411 390 413 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 9 16 0.059 62 4.1 0.1 2 22 419 439 418 442 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 10 16 0.0013 1.4 9.3 0.1 2 22 447 467 446 468 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 11 16 3e-07 0.00031 20.9 0.6 1 24 474 497 474 498 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 12 16 7.2e-06 0.0076 16.5 0.2 2 24 503 525 502 525 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 13 16 0.027 29 5.1 0.0 2 24 531 553 530 553 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 14 16 0.012 13 6.2 0.2 2 20 559 577 558 578 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 15 16 0.00017 0.18 12.1 0.2 2 24 587 609 586 609 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-201 - 642 1.7e-22 79.2 91.3 16 16 0.015 15 6.0 0.6 2 24 615 637 614 637 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 1 16 0.01 11 6.2 2.4 3 24 196 217 196 219 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 2 16 0.0026 2.8 8.0 0.7 2 12 223 233 223 236 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 3 16 0.015 16 5.6 1.6 2 12 251 261 251 261 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 4 16 3.9e-05 0.041 13.9 3.6 2 24 279 301 278 303 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 5 16 0.00039 0.41 10.7 4.8 2 24 307 329 307 331 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 6 16 9.4e-05 0.099 12.7 0.6 2 13 335 346 335 353 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 7 16 0.00048 0.5 10.4 0.7 2 12 363 373 363 386 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 8 16 0.0029 3 7.9 2.2 2 24 391 413 391 416 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 9 16 0.0097 10 6.2 0.2 2 20 419 437 419 440 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 10 16 0.0056 6 7.0 3.6 2 12 447 457 447 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 11 16 1.5e-08 1.6e-05 24.8 2.1 2 25 475 498 474 500 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 12 16 0.00052 0.55 10.3 0.8 2 23 503 524 503 528 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 13 16 3.8e-06 0.004 17.1 0.2 2 24 531 553 531 556 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 14 16 0.00094 0.99 9.5 1.1 2 12 559 569 559 570 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 15 16 0.081 86 3.3 1.9 2 12 587 597 587 609 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-201 - 642 3.6e-22 77.8 138.6 16 16 0.0013 1.4 9.0 0.9 2 11 615 624 615 625 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 1 16 0.00082 0.86 9.4 1.2 4 24 194 214 191 216 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 2 16 0.035 37 4.2 1.4 5 24 223 242 220 243 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 3 16 0.65 6.8e+02 0.1 0.8 6 26 252 272 248 273 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 4 16 0.00077 0.81 9.5 1.1 6 26 280 300 276 301 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 5 16 1.5e-05 0.016 15.0 1.7 6 26 308 328 306 329 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 6 16 0.0014 1.5 8.6 0.6 6 26 336 356 334 357 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 7 16 0.12 1.3e+02 2.5 0.1 6 17 364 375 361 383 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 8 16 0.00036 0.38 10.5 0.2 5 25 391 411 388 411 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 9 16 0.003 3.2 7.6 0.0 6 24 420 438 417 439 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 10 16 0.015 16 5.3 0.4 6 24 448 466 445 467 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 11 16 0.0012 1.3 8.9 1.0 6 25 476 495 474 497 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 12 16 0.047 49 3.8 0.1 6 24 504 522 501 524 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 13 16 0.075 80 3.1 0.1 6 25 532 551 529 553 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 14 16 0.53 5.6e+02 0.4 0.1 6 14 560 568 558 580 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 15 16 5.5e-05 0.058 13.2 1.0 6 25 588 607 585 608 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-201 - 642 1.5e-13 50.2 90.7 16 16 0.095 1e+02 2.8 0.1 6 24 616 634 613 635 0.87 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 1 16 0.031 33 4.7 1.8 3 13 196 206 195 209 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 2 16 0.015 16 5.6 0.4 3 12 224 233 222 234 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 3 16 0.05 52 4.0 1.8 3 14 252 263 250 268 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 4 16 0.038 40 4.4 2.1 3 14 280 291 279 296 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 5 16 0.011 12 6.0 1.6 3 14 308 319 306 325 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 6 16 0.0022 2.4 8.3 0.4 3 14 336 347 334 350 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 7 16 0.0018 1.9 8.6 0.4 3 14 364 375 362 379 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 8 16 0.1 1.1e+02 3.0 0.2 3 10 392 399 390 401 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 9 16 0.012 13 5.9 0.1 3 11 420 428 418 430 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 10 16 0.046 48 4.1 2.0 3 11 448 456 446 458 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 11 16 0.0025 2.7 8.1 0.5 3 14 476 487 474 492 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 12 16 0.002 2.1 8.5 0.1 3 14 504 515 502 520 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 13 16 0.04 42 4.3 0.1 3 11 532 540 530 542 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 14 16 0.00024 0.25 11.4 0.0 3 18 560 575 558 578 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 15 16 0.062 65 3.7 2.5 3 11 588 596 586 598 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-201 - 642 8.2e-08 32.2 103.1 16 16 0.017 18 5.5 0.6 3 11 616 624 614 631 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 1 17 3.7 3.9e+03 -2.4 0.1 7 16 112 121 111 122 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 2 17 0.31 3.3e+02 1.0 2.7 4 20 196 213 193 213 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 3 17 0.019 20 4.9 0.2 3 12 223 232 221 235 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 4 17 0.061 64 3.3 0.8 3 15 251 263 249 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 5 17 0.00014 0.14 11.7 0.9 2 20 278 297 277 298 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 6 17 0.0056 6 6.6 1.0 3 18 307 323 305 326 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 7 17 0.0046 4.9 6.8 0.1 3 15 335 347 333 350 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 8 17 0.0012 1.3 8.7 0.2 3 17 363 377 361 381 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 9 17 0.052 55 3.5 0.7 3 11 391 399 389 407 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 10 17 0.032 34 4.1 0.0 3 20 419 437 417 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 11 17 0.0086 9.1 6.0 0.8 3 15 447 459 445 465 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 12 17 4.7e-05 0.05 13.2 0.3 2 21 474 494 474 494 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 13 17 0.013 13 5.4 0.1 3 15 503 515 501 519 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 14 17 0.039 42 3.9 0.1 3 12 531 540 529 546 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 15 17 0.019 20 4.9 0.1 3 14 559 570 557 575 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 16 17 0.054 57 3.4 0.6 3 15 587 599 585 605 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-201 - 642 4.9e-07 29.2 96.1 17 17 0.044 46 3.7 0.8 3 12 615 624 613 629 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 1 15 0.064 67 3.7 6.4 7 34 196 230 194 231 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 2 15 0.021 23 5.2 9.2 6 34 223 258 222 261 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 3 15 0.19 2e+02 2.2 1.7 6 16 251 261 250 275 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 4 15 0.0013 1.4 9.1 8.4 6 34 279 314 278 317 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 5 15 0.00066 0.7 10.1 7.7 6 34 307 342 306 347 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 6 15 0.00024 0.26 11.5 6.1 6 35 335 371 334 374 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 7 15 0.0018 1.9 8.7 7.8 6 34 363 398 362 402 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 8 15 0.014 15 5.8 6.4 6 34 391 426 390 428 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 9 15 0.0035 3.7 7.8 5.5 6 34 419 454 417 457 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 10 15 0.016 17 5.6 1.6 6 16 447 457 446 467 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 11 15 9.3e-05 0.098 12.8 6.3 5 34 474 510 473 513 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 12 15 0.0027 2.9 8.1 5.8 6 34 503 538 502 540 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 13 15 0.00038 0.4 10.8 4.9 6 36 531 568 530 570 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 14 15 0.00082 0.86 9.8 4.6 6 34 559 594 557 597 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-201 - 642 6e-07 29.5 113.7 15 15 0.0032 3.4 7.9 6.7 6 34 587 622 586 625 0.85 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 1 9 6.4 6.8e+03 -2.1 0.0 65 65 137 137 100 169 0.52 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 2 9 0.0014 1.4 9.7 5.3 29 76 186 233 165 238 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 3 9 0.12 1.2e+02 3.5 8.2 22 76 235 289 230 297 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 4 9 0.0022 2.3 9.0 3.9 33 78 302 347 296 350 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 5 9 0.00039 0.41 11.4 2.4 28 75 353 400 348 407 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 6 9 0.0034 3.6 8.4 3.7 28 77 410 458 398 465 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 7 9 0.00011 0.12 13.2 1.9 35 75 472 512 462 519 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 8 9 0.0027 2.9 8.7 0.8 31 77 524 570 517 574 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-201 - 642 1.5e-06 28.9 80.7 9 9 0.015 16 6.3 2.3 31 74 580 623 571 630 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 1 18 2.8e-05 0.03 14.8 0.2 3 17 153 167 153 169 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 2 18 0.05 53 4.5 0.7 16 25 196 205 186 206 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 3 18 3e-11 3.2e-08 33.6 1.9 1 24 209 232 209 233 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 4 18 3.7e-06 0.0039 17.6 5.9 3 25 239 261 238 262 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 5 18 1.9e-08 2e-05 24.8 2.0 2 25 266 289 266 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 6 18 3.7e-10 3.9e-07 30.2 1.9 1 25 293 317 293 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 7 18 2.3e-11 2.4e-08 34.0 0.8 1 26 321 346 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 8 18 1.1e-11 1.2e-08 35.0 0.5 4 25 352 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 9 18 1.2e-08 1.3e-05 25.4 3.7 2 25 378 401 377 402 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 10 18 1.1e-11 1.1e-08 35.1 0.6 2 24 406 428 405 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 11 18 3.6e-08 3.7e-05 23.9 1.3 1 25 433 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 12 18 3.6e-09 3.8e-06 27.1 0.7 2 25 462 485 461 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 13 18 1.7e-11 1.8e-08 34.4 0.4 1 25 489 513 489 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 14 18 3.3e-12 3.5e-09 36.7 2.0 1 24 517 540 517 542 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 15 18 7.8e-13 8.2e-10 38.7 1.6 1 26 545 570 545 570 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 16 18 4.7e-10 5e-07 29.9 1.1 2 25 574 597 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 17 18 1.7e-12 1.8e-09 37.6 3.1 2 25 602 625 601 626 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF699-203 - 642 2.8e-123 397.4 146.3 18 18 0.017 18 6.0 0.5 2 13 630 641 629 642 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 1 17 1.8 1.9e+03 -0.3 0.3 14 19 154 159 143 161 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 2 17 8.9e-08 9.3e-05 22.7 4.8 2 23 196 217 195 217 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 3 17 6.4e-05 0.068 13.7 4.1 1 22 223 244 223 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 4 17 4.5e-05 0.047 14.1 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 5 17 7.1e-06 0.0075 16.7 2.0 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 6 17 3.3e-06 0.0035 17.7 2.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 7 17 8.6e-10 9e-07 29.0 0.5 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 8 17 4.3e-08 4.6e-05 23.6 0.3 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 9 17 9.1e-07 0.00096 19.5 2.5 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 10 17 0.00011 0.12 12.9 0.1 1 21 419 439 419 440 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 11 17 3.9e-06 0.0042 17.5 1.4 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 12 17 4.2e-10 4.5e-07 30.0 1.4 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 13 17 3.5e-10 3.7e-07 30.2 1.0 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 14 17 1.4e-09 1.4e-06 28.4 0.4 1 23 531 553 531 553 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 15 17 1.1e-08 1.2e-05 25.5 1.8 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 16 17 7.5e-06 0.0079 16.6 2.3 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF699-203 - 642 3.9e-76 247.5 141.8 17 17 1.7e-05 0.018 15.5 1.9 1 23 615 637 615 637 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 1 17 0.15 1.5e+02 3.6 0.4 5 23 142 159 141 160 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 2 17 6.7e-05 0.07 14.0 4.6 2 23 196 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 3 17 0.00034 0.36 11.8 3.4 1 22 223 244 223 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 4 17 8.1e-06 0.0085 16.8 2.9 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 5 17 9.6e-06 0.01 16.6 2.2 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 6 17 2.4e-06 0.0025 18.5 3.1 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 7 17 2.3e-06 0.0024 18.6 0.5 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 8 17 0.00023 0.24 12.3 0.5 1 19 363 381 363 386 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 9 17 9.4e-07 0.00099 19.8 2.1 1 23 391 413 391 414 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 10 17 0.00095 1 10.4 0.1 1 22 419 440 419 442 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 11 17 1e-06 0.0011 19.7 1.7 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 12 17 2.9e-07 0.0003 21.3 1.2 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 13 17 2.2e-06 0.0023 18.6 0.9 1 23 503 525 503 526 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 14 17 1.7e-06 0.0018 18.9 0.3 1 23 531 553 531 554 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 15 17 0.00027 0.28 12.1 1.5 1 23 559 581 559 582 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 16 17 1.2e-06 0.0012 19.5 2.8 1 23 587 609 587 610 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF699-203 - 642 4.6e-57 185.7 141.4 17 17 1.1e-06 0.0011 19.6 2.1 1 23 615 637 615 638 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF699-203 - 642 9e-26 89.3 1.1 1 1 1.6e-28 1.7e-25 88.4 1.1 1 42 18 59 18 59 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 1 16 5.7e-05 0.06 13.7 2.0 4 24 197 217 196 217 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 2 16 2.6 2.7e+03 -1.2 2.8 4 12 225 233 222 244 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 3 16 0.025 26 5.3 1.9 2 22 251 271 250 271 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 4 16 0.0025 2.6 8.4 0.6 2 22 279 299 278 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 5 16 0.0081 8.5 6.8 0.6 2 22 307 327 306 327 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 6 16 0.00031 0.33 11.3 0.1 2 22 335 355 334 355 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 7 16 0.0041 4.4 7.7 0.1 2 20 363 381 362 385 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 8 16 0.16 1.7e+02 2.6 1.0 2 22 391 411 390 413 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 9 16 0.059 62 4.1 0.1 2 22 419 439 418 442 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 10 16 0.0013 1.4 9.3 0.1 2 22 447 467 446 468 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 11 16 3e-07 0.00031 20.9 0.6 1 24 474 497 474 498 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 12 16 7.2e-06 0.0076 16.5 0.2 2 24 503 525 502 525 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 13 16 0.027 29 5.1 0.0 2 24 531 553 530 553 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 14 16 0.012 13 6.2 0.2 2 20 559 577 558 578 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 15 16 0.00017 0.18 12.1 0.2 2 24 587 609 586 609 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF699-203 - 642 1.7e-22 79.2 91.3 16 16 0.015 15 6.0 0.6 2 24 615 637 614 637 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 1 16 0.01 11 6.2 2.4 3 24 196 217 196 219 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 2 16 0.0026 2.8 8.0 0.7 2 12 223 233 223 236 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 3 16 0.015 16 5.6 1.6 2 12 251 261 251 261 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 4 16 3.9e-05 0.041 13.9 3.6 2 24 279 301 278 303 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 5 16 0.00039 0.41 10.7 4.8 2 24 307 329 307 331 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 6 16 9.4e-05 0.099 12.7 0.6 2 13 335 346 335 353 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 7 16 0.00048 0.5 10.4 0.7 2 12 363 373 363 386 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 8 16 0.0029 3 7.9 2.2 2 24 391 413 391 416 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 9 16 0.0097 10 6.2 0.2 2 20 419 437 419 440 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 10 16 0.0056 6 7.0 3.6 2 12 447 457 447 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 11 16 1.5e-08 1.6e-05 24.8 2.1 2 25 475 498 474 500 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 12 16 0.00052 0.55 10.3 0.8 2 23 503 524 503 528 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 13 16 3.8e-06 0.004 17.1 0.2 2 24 531 553 531 556 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 14 16 0.00094 0.99 9.5 1.1 2 12 559 569 559 570 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 15 16 0.081 86 3.3 1.9 2 12 587 597 587 609 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF699-203 - 642 3.6e-22 77.8 138.6 16 16 0.0013 1.4 9.0 0.9 2 11 615 624 615 625 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 1 16 0.00082 0.86 9.4 1.2 4 24 194 214 191 216 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 2 16 0.035 37 4.2 1.4 5 24 223 242 220 243 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 3 16 0.65 6.8e+02 0.1 0.8 6 26 252 272 248 273 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 4 16 0.00077 0.81 9.5 1.1 6 26 280 300 276 301 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 5 16 1.5e-05 0.016 15.0 1.7 6 26 308 328 306 329 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 6 16 0.0014 1.5 8.6 0.6 6 26 336 356 334 357 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 7 16 0.12 1.3e+02 2.5 0.1 6 17 364 375 361 383 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 8 16 0.00036 0.38 10.5 0.2 5 25 391 411 388 411 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 9 16 0.003 3.2 7.6 0.0 6 24 420 438 417 439 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 10 16 0.015 16 5.3 0.4 6 24 448 466 445 467 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 11 16 0.0012 1.3 8.9 1.0 6 25 476 495 474 497 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 12 16 0.047 49 3.8 0.1 6 24 504 522 501 524 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 13 16 0.075 80 3.1 0.1 6 25 532 551 529 553 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 14 16 0.53 5.6e+02 0.4 0.1 6 14 560 568 558 580 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 15 16 5.5e-05 0.058 13.2 1.0 6 25 588 607 585 608 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF699-203 - 642 1.5e-13 50.2 90.7 16 16 0.095 1e+02 2.8 0.1 6 24 616 634 613 635 0.87 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 1 16 0.031 33 4.7 1.8 3 13 196 206 195 209 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 2 16 0.015 16 5.6 0.4 3 12 224 233 222 234 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 3 16 0.05 52 4.0 1.8 3 14 252 263 250 268 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 4 16 0.038 40 4.4 2.1 3 14 280 291 279 296 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 5 16 0.011 12 6.0 1.6 3 14 308 319 306 325 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 6 16 0.0022 2.4 8.3 0.4 3 14 336 347 334 350 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 7 16 0.0018 1.9 8.6 0.4 3 14 364 375 362 379 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 8 16 0.1 1.1e+02 3.0 0.2 3 10 392 399 390 401 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 9 16 0.012 13 5.9 0.1 3 11 420 428 418 430 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 10 16 0.046 48 4.1 2.0 3 11 448 456 446 458 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 11 16 0.0025 2.7 8.1 0.5 3 14 476 487 474 492 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 12 16 0.002 2.1 8.5 0.1 3 14 504 515 502 520 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 13 16 0.04 42 4.3 0.1 3 11 532 540 530 542 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 14 16 0.00024 0.25 11.4 0.0 3 18 560 575 558 578 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 15 16 0.062 65 3.7 2.5 3 11 588 596 586 598 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF699-203 - 642 8.2e-08 32.2 103.1 16 16 0.017 18 5.5 0.6 3 11 616 624 614 631 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 1 17 3.7 3.9e+03 -2.4 0.1 7 16 112 121 111 122 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 2 17 0.31 3.3e+02 1.0 2.7 4 20 196 213 193 213 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 3 17 0.019 20 4.9 0.2 3 12 223 232 221 235 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 4 17 0.061 64 3.3 0.8 3 15 251 263 249 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 5 17 0.00014 0.14 11.7 0.9 2 20 278 297 277 298 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 6 17 0.0056 6 6.6 1.0 3 18 307 323 305 326 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 7 17 0.0046 4.9 6.8 0.1 3 15 335 347 333 350 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 8 17 0.0012 1.3 8.7 0.2 3 17 363 377 361 381 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 9 17 0.052 55 3.5 0.7 3 11 391 399 389 407 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 10 17 0.032 34 4.1 0.0 3 20 419 437 417 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 11 17 0.0086 9.1 6.0 0.8 3 15 447 459 445 465 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 12 17 4.7e-05 0.05 13.2 0.3 2 21 474 494 474 494 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 13 17 0.013 13 5.4 0.1 3 15 503 515 501 519 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 14 17 0.039 42 3.9 0.1 3 12 531 540 529 546 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 15 17 0.019 20 4.9 0.1 3 14 559 570 557 575 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 16 17 0.054 57 3.4 0.6 3 15 587 599 585 605 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF699-203 - 642 4.9e-07 29.2 96.1 17 17 0.044 46 3.7 0.8 3 12 615 624 613 629 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 1 15 0.064 67 3.7 6.4 7 34 196 230 194 231 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 2 15 0.021 23 5.2 9.2 6 34 223 258 222 261 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 3 15 0.19 2e+02 2.2 1.7 6 16 251 261 250 275 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 4 15 0.0013 1.4 9.1 8.4 6 34 279 314 278 317 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 5 15 0.00066 0.7 10.1 7.7 6 34 307 342 306 347 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 6 15 0.00024 0.26 11.5 6.1 6 35 335 371 334 374 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 7 15 0.0018 1.9 8.7 7.8 6 34 363 398 362 402 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 8 15 0.014 15 5.8 6.4 6 34 391 426 390 428 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 9 15 0.0035 3.7 7.8 5.5 6 34 419 454 417 457 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 10 15 0.016 17 5.6 1.6 6 16 447 457 446 467 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 11 15 9.3e-05 0.098 12.8 6.3 5 34 474 510 473 513 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 12 15 0.0027 2.9 8.1 5.8 6 34 503 538 502 540 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 13 15 0.00038 0.4 10.8 4.9 6 36 531 568 530 570 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 14 15 0.00082 0.86 9.8 4.6 6 34 559 594 557 597 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF699-203 - 642 6e-07 29.5 113.7 15 15 0.0032 3.4 7.9 6.7 6 34 587 622 586 625 0.85 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 1 9 6.4 6.8e+03 -2.1 0.0 65 65 137 137 100 169 0.52 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 2 9 0.0014 1.4 9.7 5.3 29 76 186 233 165 238 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 3 9 0.12 1.2e+02 3.5 8.2 22 76 235 289 230 297 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 4 9 0.0022 2.3 9.0 3.9 33 78 302 347 296 350 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 5 9 0.00039 0.41 11.4 2.4 28 75 353 400 348 407 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 6 9 0.0034 3.6 8.4 3.7 28 77 410 458 398 465 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 7 9 0.00011 0.12 13.2 1.9 35 75 472 512 462 519 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 8 9 0.0027 2.9 8.7 0.8 31 77 524 570 517 574 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF699-203 - 642 1.5e-06 28.9 80.7 9 9 0.015 16 6.3 2.3 31 74 580 623 571 630 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 1 12 0.00031 0.29 11.6 0.5 12 25 137 150 131 151 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 2 12 2.1e-09 2e-06 28.0 1.5 1 25 154 178 154 179 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 3 12 2.9e-11 2.8e-08 33.8 0.6 1 25 182 206 182 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 4 12 1e-10 9.6e-08 32.1 0.5 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 5 12 1.5e-12 1.4e-09 38.0 0.8 1 25 238 262 238 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 6 12 7.3e-08 6.9e-05 23.1 4.5 1 24 266 289 266 291 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 7 12 1.9e-12 1.8e-09 37.6 1.2 1 25 294 318 294 319 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 8 12 2.1e-11 2e-08 34.3 1.2 1 25 322 346 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 9 12 3.4e-08 3.2e-05 24.2 4.2 2 24 351 373 350 375 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 10 12 1.6e-07 0.00016 22.0 1.1 1 26 378 402 378 402 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 11 12 8e-09 7.5e-06 26.1 0.9 2 24 406 428 405 429 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF70-201 - 446 4.5e-79 257.6 93.6 12 12 0.019 18 6.0 0.7 1 13 433 445 433 446 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 1 11 5.1e-08 4.8e-05 23.6 0.7 1 23 140 162 140 162 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 2 11 3.6e-08 3.4e-05 24.1 2.3 1 23 168 190 168 190 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 3 11 9.6e-09 9.1e-06 25.9 0.4 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 4 11 7.1e-09 6.7e-06 26.3 1.0 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 5 11 1.1e-08 1e-05 25.7 0.9 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 6 11 4.4e-07 0.00042 20.6 7.3 1 23 280 302 280 302 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 7 11 1.4e-09 1.3e-06 28.5 0.5 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 8 11 2.8e-09 2.6e-06 27.6 0.6 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 9 11 6.9e-07 0.00065 20.0 4.7 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 10 11 1.7e-05 0.016 15.6 1.3 5 23 395 413 392 413 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF70-201 - 446 1.8e-64 210.7 90.5 11 11 4.2e-09 4e-06 27.0 1.5 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 1 11 4e-06 0.0038 17.9 0.8 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 2 11 1e-05 0.0099 16.7 2.6 1 23 168 190 168 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 3 11 1e-05 0.0096 16.7 0.4 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 4 11 7.9e-07 0.00075 20.1 0.8 1 23 224 246 224 247 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 5 11 7.7e-07 0.00073 20.2 0.8 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 6 11 0.00091 0.86 10.6 5.9 1 23 280 302 280 303 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 7 11 1.8e-06 0.0017 19.0 0.5 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 8 11 1.6e-05 0.015 16.1 0.7 1 23 336 358 336 359 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 9 11 0.00021 0.2 12.6 4.8 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 10 11 0.0041 3.9 8.6 1.3 2 23 393 413 392 414 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF70-201 - 446 5.3e-37 123.3 89.2 11 11 2.1e-06 0.002 18.8 1.3 1 23 419 441 419 442 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 1 11 0.0017 1.6 8.8 0.1 4 14 142 152 139 158 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 2 11 0.0043 4.1 7.5 0.8 3 14 169 180 167 186 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 3 11 0.0014 1.4 9.1 0.1 3 14 197 208 195 213 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 4 11 0.0049 4.6 7.4 0.3 3 14 225 236 223 241 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 5 11 0.0026 2.4 8.3 0.3 3 14 253 264 251 268 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 6 11 0.02 19 5.4 0.3 3 12 281 290 279 298 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 7 11 0.00036 0.34 11.0 0.3 3 14 309 320 307 323 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 8 11 0.0019 1.8 8.7 0.3 3 14 337 348 335 351 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 9 11 0.064 60 3.8 2.1 3 14 365 376 363 380 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 10 11 0.38 3.6e+02 1.3 0.0 6 20 395 410 393 413 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF70-201 - 446 2.9e-11 43.2 52.4 11 11 0.13 1.3e+02 2.8 0.0 3 14 420 431 418 435 0.87 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 1 11 0.032 30 4.7 0.3 2 12 140 150 140 151 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 2 11 0.089 84 3.3 2.9 2 12 168 178 168 179 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 3 11 0.00034 0.32 11.0 1.2 2 24 196 218 196 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 4 11 7e-05 0.066 13.2 0.6 2 24 224 246 224 249 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 5 11 0.00019 0.18 11.8 2.1 2 24 252 274 252 275 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 6 11 0.0027 2.6 8.2 0.3 2 11 280 289 280 289 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 7 11 5.3e-08 5e-05 23.2 0.9 2 24 308 330 308 333 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 8 11 0.00019 0.18 11.9 1.2 2 24 336 358 336 361 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 9 11 0.62 5.8e+02 0.6 4.8 2 20 364 382 364 387 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 10 11 0.0084 7.9 6.6 1.3 6 25 395 414 394 416 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF70-201 - 446 4.3e-11 42.5 94.7 11 11 0.0051 4.9 7.3 1.7 2 12 419 429 419 441 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 1 10 0.00012 0.12 12.2 0.9 7 26 142 161 139 162 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 2 10 0.00079 0.74 9.6 2.6 6 26 169 189 166 190 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 3 10 0.012 12 5.8 0.2 6 26 197 217 194 218 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 4 10 5.5e-06 0.0052 16.5 0.3 6 26 225 245 223 246 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 5 10 0.00017 0.16 11.7 0.5 5 26 252 273 249 274 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 6 10 0.54 5.1e+02 0.6 4.5 6 26 281 301 279 302 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 7 10 0.017 16 5.4 0.1 5 24 308 327 306 329 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 8 10 0.0002 0.19 11.5 0.5 5 26 336 357 333 358 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 9 10 0.092 87 3.0 4.7 6 26 365 385 362 386 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF70-201 - 446 3.3e-09 36.3 73.3 10 10 0.4 3.8e+02 1.0 2.3 7 26 421 440 419 441 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 1 11 0.13 1.3e+02 3.1 0.0 2 21 140 159 139 160 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 2 11 0.036 34 4.9 0.7 2 20 168 186 167 188 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 3 11 0.003 2.8 8.3 0.1 2 22 196 216 195 216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 4 11 0.00012 0.11 12.8 0.0 2 22 224 244 223 244 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 5 11 0.0075 7.1 7.0 0.2 4 22 254 272 251 272 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 6 11 0.18 1.7e+02 2.6 1.0 2 16 280 294 279 300 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 7 11 0.0011 1 9.7 0.5 2 24 308 330 307 330 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 8 11 0.067 64 4.0 0.2 2 22 336 356 335 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 9 11 0.36 3.4e+02 1.7 2.8 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 10 11 0.033 31 5.0 0.6 6 24 395 413 394 413 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF70-201 - 446 4.9e-09 36.2 52.8 11 11 0.0034 3.3 8.1 0.0 2 22 419 439 418 439 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 1 10 0.0043 4 7.6 6.7 6 35 140 176 136 179 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 2 10 0.0043 4 7.6 8.5 6 37 168 206 167 208 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 3 10 5.2e-05 0.049 13.8 5.8 6 38 196 235 195 237 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 4 10 0.0016 1.5 9.0 0.7 6 20 224 238 223 245 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 5 10 0.00023 0.22 11.7 3.0 6 34 252 287 251 293 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 6 10 0.0026 2.5 8.3 0.4 6 18 308 320 307 331 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 7 10 0.00026 0.25 11.5 7.5 6 34 336 371 335 374 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 8 10 0.37 3.5e+02 1.4 7.5 6 36 364 400 362 404 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 9 10 1.7 1.6e+03 -0.7 0.2 6 18 392 403 391 412 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF70-201 - 446 6.2e-09 35.8 60.3 10 10 0.03 29 4.9 0.1 6 16 419 429 418 444 0.79 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF717-203 - 114 3.1e-23 81.1 1.5 1 1 2.5e-27 4.5e-23 80.6 1.5 1 42 21 62 21 62 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 1 24 0.31 6.9e+02 1.0 0.1 10 18 126 134 123 135 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 2 24 1.9 4.3e+03 -1.5 0.2 5 25 145 169 144 170 0.53 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 3 24 1.4 3.2e+03 -1.1 0.1 5 14 177 186 176 197 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 4 24 2.6e-08 5.7e-05 23.4 1.3 2 22 220 240 219 240 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 5 24 0.069 1.6e+02 3.0 0.7 10 25 256 271 256 272 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 6 24 7.7e-09 1.7e-05 25.0 0.2 5 25 279 299 275 300 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 7 24 3e-09 6.8e-06 26.3 4.4 2 24 304 326 304 328 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 8 24 4.5e-10 1e-06 28.9 1.8 2 25 332 355 332 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 9 24 4.9e-08 0.00011 22.5 4.1 2 26 360 384 359 384 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 10 24 5.9e-10 1.3e-06 28.5 0.5 2 23 388 409 387 412 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 11 24 8.2e-12 1.8e-08 34.4 2.4 1 24 415 438 415 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 12 24 9.7e-10 2.2e-06 27.8 1.6 3 25 445 467 444 468 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 13 24 1.1e-08 2.4e-05 24.6 1.1 2 26 472 496 472 496 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 14 24 1.1e-08 2.5e-05 24.5 6.6 2 24 500 522 499 524 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 15 24 4.9e-09 1.1e-05 25.6 0.6 3 25 529 551 528 552 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 16 24 2.5e-10 5.6e-07 29.7 0.5 5 25 559 579 555 580 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 17 24 2.1e-10 4.8e-07 29.9 1.3 1 24 583 606 583 608 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 18 24 0.025 55 4.4 0.2 3 13 613 623 612 626 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 19 24 2e-08 4.5e-05 23.7 6.6 2 24 695 717 695 719 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 20 24 1e-10 2.3e-07 30.9 0.8 1 24 722 745 722 746 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 21 24 2.4e-11 5.4e-08 32.9 1.7 3 25 752 774 751 775 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 22 24 1.1e-08 2.4e-05 24.5 4.1 5 25 782 802 778 803 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 23 24 1.3e-11 2.9e-08 33.8 0.7 2 24 807 829 806 829 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF717-204 - 864 1.9e-123 397.9 191.0 24 24 0.0072 16 6.1 0.2 1 13 834 846 834 850 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 1 23 8 1.8e+04 -4.7 4.2 8 21 138 151 131 152 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 2 23 0.0061 14 6.4 0.2 7 23 165 181 159 181 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 3 23 0.0026 5.9 7.6 0.1 9 23 213 227 211 227 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 4 23 0.0089 20 5.9 0.0 1 17 233 249 233 250 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 5 23 9.2e-07 0.0021 18.4 0.3 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 6 23 1e-07 0.00022 21.5 1.4 3 23 291 311 289 311 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 7 23 0.0079 18 6.0 7.9 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 8 23 6e-09 1.4e-05 25.3 3.9 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 9 23 6.1e-07 0.0014 19.0 3.4 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 10 23 3e-10 6.7e-07 29.4 0.6 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 11 23 2.1e-06 0.0047 17.3 2.2 1 20 429 448 429 451 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 12 23 7.4e-07 0.0016 18.7 4.0 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 13 23 9.6e-08 0.00022 21.5 5.0 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 14 23 2.4e-05 0.054 14.0 5.6 1 23 513 535 513 535 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 15 23 2.1e-06 0.0047 17.3 0.4 1 23 541 563 541 563 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 16 23 4.1e-09 9.2e-06 25.8 1.0 1 23 569 591 569 591 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 17 23 2.1e-08 4.7e-05 23.6 3.5 1 23 597 619 597 619 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 18 23 0.19 4.2e+02 1.7 0.4 12 23 691 702 688 702 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 19 23 9e-08 0.0002 21.6 4.6 1 23 708 730 708 730 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 20 23 9.3e-07 0.0021 18.4 1.2 1 23 736 758 736 758 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 21 23 3.6e-07 0.0008 19.7 5.5 1 23 764 786 764 786 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 22 23 2.5e-08 5.5e-05 23.4 2.1 1 23 792 814 792 814 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF717-204 - 864 2.1e-81 264.1 215.7 23 23 1.4e-08 3.1e-05 24.2 6.3 1 23 820 842 820 842 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 1 23 8 1.8e+04 -8.5 8.2 12 24 139 150 131 150 0.61 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 2 23 0.65 1.5e+03 0.6 0.1 7 23 165 181 159 182 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 3 23 0.77 1.7e+03 0.3 0.1 10 23 214 227 210 228 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 4 23 0.34 7.5e+02 1.5 0.1 1 16 233 248 233 251 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 5 23 0.00016 0.36 11.8 0.4 1 23 261 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 6 23 9.6e-05 0.21 12.5 0.9 2 23 290 311 289 312 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 7 23 0.00051 1.1 10.2 6.7 1 23 317 339 317 340 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 8 23 8.1e-06 0.018 15.8 2.7 1 23 345 367 345 368 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 9 23 6.9e-05 0.15 12.9 2.8 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 10 23 4.2e-06 0.0095 16.7 0.4 1 23 401 423 401 424 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 11 23 0.00012 0.28 12.1 2.0 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 12 23 5.3e-06 0.012 16.4 2.6 1 23 457 479 457 480 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 13 23 0.00026 0.59 11.1 3.5 1 23 485 507 485 508 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 14 23 3.9e-05 0.087 13.7 4.0 1 23 513 535 513 536 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 15 23 9.8e-05 0.22 12.5 0.3 1 23 541 563 541 564 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 16 23 4e-06 0.009 16.8 0.6 1 23 569 591 569 592 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 17 23 4.7e-05 0.1 13.5 2.3 1 23 597 619 597 620 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 18 23 5.3 1.2e+04 -2.3 0.6 12 23 690 702 688 703 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 19 23 7e-05 0.16 12.9 3.7 1 23 708 730 708 731 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 20 23 0.00015 0.35 11.8 0.6 1 23 736 758 736 759 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 21 23 3.1e-05 0.07 14.0 4.8 1 23 764 786 764 787 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 22 23 3.5e-06 0.0078 17.0 1.4 1 23 792 814 792 815 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF717-204 - 864 1.1e-38 128.5 202.0 23 23 2e-06 0.0044 17.7 4.7 1 23 820 842 820 843 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 1 14 1.6 3.5e+03 -1.8 0.1 6 17 159 170 158 179 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 2 14 0.48 1.1e+03 -0.2 3.4 9 34 216 240 211 245 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 3 14 3.5e-05 0.079 13.1 0.5 6 38 261 300 260 301 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 4 14 0.0012 2.6 8.2 5.9 6 35 317 353 316 357 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 5 14 0.00099 2.2 8.4 5.2 6 34 345 380 344 385 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 6 14 0.0067 15 5.8 6.0 6 34 373 408 371 410 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 7 14 0.00011 0.24 11.5 5.5 6 38 401 440 400 443 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 8 14 2.8e-05 0.062 13.4 5.1 6 35 457 493 456 497 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 9 14 0.00026 0.58 10.3 4.2 6 34 513 548 512 554 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 10 14 2.8e-05 0.063 13.4 4.4 6 38 569 608 568 610 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 11 14 0.21 4.8e+02 1.0 10.1 6 34 708 743 707 746 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 12 14 0.066 1.5e+02 2.6 7.4 6 35 736 772 735 776 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 13 14 0.05 1.1e+02 3.0 1.0 6 17 764 775 762 785 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF717-204 - 864 1.3e-07 31.6 125.4 14 14 0.00069 1.6 9.0 6.5 6 34 792 827 791 833 0.88 Zinc ribbon domain XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 1 19 3.5 7.9e+03 -3.0 0.0 16 23 155 162 153 162 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 2 19 0.2 4.5e+02 1.0 0.2 3 10 234 241 232 244 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 3 19 0.016 35 4.6 0.1 4 12 291 299 289 307 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 4 19 0.0033 7.4 6.7 0.5 3 12 318 327 316 335 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 5 19 0.0024 5.3 7.2 0.1 3 16 346 360 344 364 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 6 19 0.15 3.3e+02 1.5 0.1 4 12 375 383 372 388 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 7 19 0.005 11 6.1 0.2 3 12 402 411 400 414 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 8 19 0.0026 5.9 7.0 0.1 3 13 430 440 428 447 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 9 19 0.0062 14 5.8 0.6 3 16 458 472 456 475 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 10 19 0.082 1.8e+02 2.3 0.1 4 16 487 500 485 504 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 11 19 0.0077 17 5.5 0.9 3 16 514 528 512 531 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 12 19 0.025 56 3.9 0.4 3 12 542 551 540 552 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 13 19 0.0062 14 5.8 0.1 3 12 570 579 568 587 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 14 19 0.0036 8 6.6 0.0 3 13 598 608 596 615 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 15 19 0.0058 13 5.9 0.8 3 12 709 718 707 726 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 16 19 0.006 13 5.9 0.1 3 13 737 747 735 751 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 17 19 0.0095 21 5.2 0.3 3 17 765 780 763 784 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 18 19 0.094 2.1e+02 2.1 0.7 3 12 793 802 792 804 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF717-204 - 864 2.6e-07 30.5 95.3 19 19 0.0028 6.3 6.9 1.0 3 13 821 831 819 838 0.82 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 1 22 1.2 2.7e+03 -1.5 0.0 9 18 3 12 2 13 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 2 22 0.71 1.6e+03 -0.7 0.9 19 26 144 151 144 152 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 3 22 1.8 4.1e+03 -2.0 0.1 2 13 159 170 158 171 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 4 22 3.6 8.1e+03 -3.0 1.9 2 9 233 240 233 240 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 5 22 0.027 60 3.8 0.3 2 22 261 281 261 285 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 6 22 0.00087 2 8.5 0.6 2 13 289 300 289 311 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 7 22 0.035 77 3.4 2.9 2 12 317 327 317 331 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 8 22 0.00047 1 9.4 1.1 2 12 345 355 345 368 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 9 22 0.71 1.6e+03 -0.7 1.2 2 12 373 383 373 397 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 10 22 0.0026 5.7 7.1 0.3 2 24 401 423 401 426 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 11 22 0.00019 0.43 10.6 1.2 2 12 429 439 429 440 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 12 22 0.0015 3.3 7.8 3.3 2 12 457 467 457 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 13 22 0.0089 20 5.3 1.1 2 12 485 495 485 507 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 14 22 0.0024 5.4 7.1 4.6 2 12 513 523 513 524 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 15 22 3.2e-05 0.072 13.1 0.3 2 24 541 563 541 566 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 16 22 8.3e-05 0.19 11.8 1.2 2 20 569 587 569 593 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 17 22 0.00037 0.83 9.7 1.2 2 13 597 608 597 621 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 18 22 0.0019 4.3 7.5 2.8 2 11 708 717 708 731 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 19 22 0.00047 1.1 9.4 0.4 2 24 736 758 736 761 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 20 22 0.0042 9.3 6.4 3.2 2 13 764 775 764 788 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 21 22 0.0027 6 7.0 0.7 2 12 792 802 792 816 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF717-204 - 864 9.9e-07 28.6 171.7 22 22 0.0047 10 6.2 4.6 2 11 820 829 820 830 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 1 19 3.2 7.1e+03 -2.5 0.1 9 17 166 174 165 177 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 2 19 0.035 78 3.7 0.0 2 16 233 247 232 249 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 3 19 0.0045 10 6.6 0.2 4 24 291 311 289 311 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 4 19 0.017 38 4.7 1.1 2 12 317 327 316 339 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 5 19 0.15 3.4e+02 1.7 0.2 4 12 347 355 344 366 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 6 19 0.022 49 4.4 0.7 2 24 373 395 372 395 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 7 19 7.4e-05 0.17 12.3 0.1 2 24 401 423 400 423 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 8 19 0.009 20 5.6 0.5 2 20 429 447 428 448 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 9 19 0.019 42 4.6 0.9 2 24 457 479 456 480 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 10 19 0.16 3.5e+02 1.6 1.0 2 20 485 503 484 507 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 11 19 0.18 4e+02 1.5 2.4 2 24 513 535 512 536 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 12 19 0.00013 0.28 11.5 0.3 2 24 541 563 540 563 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 13 19 0.012 26 5.2 0.1 2 20 569 587 568 589 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 14 19 0.003 6.8 7.1 0.6 2 24 597 619 596 619 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 15 19 0.12 2.7e+02 2.0 1.5 2 20 708 726 707 730 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 16 19 0.0001 0.23 11.8 0.2 2 24 736 758 735 758 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 17 19 0.002 4.5 7.7 0.4 2 12 764 774 763 779 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 18 19 0.0089 20 5.6 0.3 2 23 792 813 791 814 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF717-204 - 864 1.8e-06 28.1 114.5 19 19 0.055 1.2e+02 3.1 2.0 2 11 820 829 819 842 0.80 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF717-205 - 86 7e-25 86.4 6.5 1 2 0.00025 2.3 8.0 0.3 31 41 1 11 1 12 0.97 KRAB box KRAB PF01352.27 42 ZNF717-205 - 86 7e-25 86.4 6.5 2 2 2.6e-27 2.3e-23 81.5 1.5 1 42 14 55 14 55 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF717-206 - 93 2.1e-23 81.7 1.5 1 1 1.6e-27 2.8e-23 81.3 1.5 1 42 21 62 21 62 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF720-201 - 126 1.7e-24 85.2 0.2 1 1 2e-28 3.6e-24 84.1 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 1 14 0.27 3.2e+02 2.0 0.2 10 24 107 121 100 123 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 2 14 0.027 32 5.2 0.5 4 18 126 143 124 147 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 3 14 5.8e-10 7e-07 29.4 3.5 1 26 154 179 154 179 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 4 14 1e-11 1.2e-08 35.0 1.1 1 26 182 207 182 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 5 14 3.7e-09 4.5e-06 26.9 7.2 2 26 211 235 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 6 14 9.4e-12 1.1e-08 35.1 0.8 1 25 238 262 238 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 7 14 8.4e-12 1e-08 35.2 2.5 1 25 266 290 266 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 8 14 9.4e-11 1.1e-07 31.9 2.7 2 25 295 318 294 319 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 9 14 2.8e-11 3.4e-08 33.6 1.5 2 25 323 346 322 347 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 10 14 5.8e-10 6.9e-07 29.4 1.4 2 25 351 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 11 14 2.7e-10 3.2e-07 30.5 2.7 1 26 378 403 378 403 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 12 14 9.6e-06 0.011 16.1 0.1 2 25 407 430 407 431 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 13 14 1.3e-11 1.5e-08 34.6 1.2 1 25 434 458 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-203 - 475 3.4e-82 267.5 130.6 14 14 0.11 1.3e+02 3.2 0.4 2 13 463 474 462 475 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 1 14 7.1 8.5e+03 -2.4 1.8 17 23 73 79 73 79 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 2 14 1.8 2.2e+03 -0.6 0.4 2 14 113 125 113 126 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 3 14 0.19 2.3e+02 2.6 0.6 6 23 142 162 140 162 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 4 14 3.6e-08 4.4e-05 23.7 4.1 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 5 14 2.9e-09 3.4e-06 27.2 2.2 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 6 14 1.2e-07 0.00014 22.1 5.6 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 7 14 5.4e-09 6.5e-06 26.3 0.6 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 8 14 4e-06 0.0048 17.3 5.1 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 9 14 3.5e-09 4.2e-06 26.9 2.1 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 10 14 3.1e-06 0.0037 17.6 3.2 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 11 14 3.6e-07 0.00043 20.6 2.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 12 14 2.5e-06 0.0029 17.9 5.8 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 13 14 5.1e-10 6.2e-07 29.5 0.7 1 23 420 442 420 442 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-203 - 475 4.7e-50 165.3 145.3 14 14 5.7e-07 0.00068 19.9 4.5 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 1 13 6.1 7.2e+03 -1.6 0.4 2 11 113 122 113 128 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 2 13 1.4 1.6e+03 0.4 0.3 3 23 142 162 140 163 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 3 13 0.00069 0.83 10.7 2.8 1 23 168 190 168 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 4 13 5.3e-06 0.0063 17.2 1.6 1 23 196 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 5 13 0.001 1.2 10.1 4.9 1 23 224 246 224 247 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 6 13 2.7e-06 0.0033 18.1 0.8 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 7 13 5.6e-05 0.067 14.1 4.1 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 8 13 3.5e-06 0.0042 17.8 1.9 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 9 13 6.8e-06 0.0081 16.9 2.7 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 10 13 4.1e-06 0.0048 17.6 2.0 1 23 364 386 364 387 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 11 13 0.00037 0.45 11.5 5.5 1 23 392 414 392 415 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 12 13 6.8e-06 0.0082 16.9 0.3 1 23 420 442 420 443 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-203 - 475 1.1e-24 85.0 132.8 13 13 4e-05 0.048 14.5 3.4 1 23 448 470 448 471 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 1 11 0.00013 0.16 12.3 2.2 2 21 168 187 167 188 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 2 11 4e-05 0.048 14.0 0.4 2 22 196 216 195 216 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 3 11 0.029 35 4.8 2.7 2 22 224 244 223 244 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 4 11 5.4e-05 0.065 13.5 0.1 2 22 252 272 251 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 5 11 0.027 32 5.0 2.6 2 21 280 299 279 300 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 6 11 0.00018 0.22 11.9 0.2 2 22 308 328 307 328 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 7 11 0.0083 10 6.6 0.9 2 22 336 356 335 356 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 8 11 0.0019 2.3 8.6 0.6 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 9 11 0.0086 10 6.5 2.6 2 15 392 405 391 414 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 10 11 0.0021 2.5 8.5 0.0 2 21 420 439 419 439 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-203 - 475 1.2e-14 54.1 73.3 11 11 0.0092 11 6.4 0.6 2 21 448 467 447 468 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 1 11 1.2 1.4e+03 -0.5 5.1 10 32 89 117 84 121 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 2 11 0.00023 0.28 11.4 5.5 6 34 168 203 167 206 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 3 11 0.00029 0.35 11.0 5.3 6 33 196 230 195 234 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 4 11 6.4e-05 0.077 13.1 4.6 6 34 224 259 223 264 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 5 11 0.0011 1.3 9.2 7.2 6 34 252 287 250 292 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 6 11 0.00093 1.1 9.4 5.4 6 38 280 319 279 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 7 11 5.5e-06 0.0066 16.5 2.3 6 34 308 343 306 346 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 8 11 1.4e-05 0.017 15.2 5.7 6 34 336 371 335 376 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 9 11 0.00081 0.96 9.6 2.2 6 33 392 426 389 431 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 10 11 5.6e-05 0.067 13.3 2.5 6 35 420 456 418 461 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-203 - 475 7.3e-10 38.8 73.5 11 11 0.004 4.8 7.4 0.8 6 17 448 459 446 467 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 1 13 8.1 9.7e+03 -3.2 1.3 3 11 113 121 113 121 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 2 13 0.19 2.2e+02 2.0 0.2 11 24 149 162 139 165 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 3 13 0.0092 11 6.1 3.9 2 12 168 178 168 188 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 4 13 0.00018 0.21 11.6 1.3 2 13 196 207 196 208 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 5 13 0.19 2.2e+02 2.0 2.6 2 11 224 233 223 239 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 6 13 3.2e-05 0.038 14.0 1.1 2 21 252 271 252 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 7 13 0.0021 2.5 8.2 2.5 2 12 280 290 280 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 8 13 3.2e-05 0.039 14.0 1.2 2 22 308 328 307 332 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 9 13 0.0016 1.9 8.6 2.0 2 12 336 346 336 354 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 10 13 0.00038 0.46 10.6 2.4 2 22 364 384 364 388 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 11 13 0.0025 3 8.0 1.7 2 12 392 402 391 403 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 12 13 0.029 35 4.5 0.1 2 20 420 438 420 442 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-203 - 475 3.5e-09 36.4 107.7 13 13 0.00018 0.22 11.6 3.6 2 24 448 470 448 473 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF720-205 - 250 5.8e-24 83.5 0.2 1 1 6.7e-28 1.2e-23 82.5 0.2 2 42 6 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 1 14 0.32 3.8e+02 1.8 0.2 10 24 175 189 168 191 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 2 14 0.032 38 5.0 0.5 4 18 194 211 192 215 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 3 14 6.8e-10 8.2e-07 29.2 3.5 1 26 222 247 222 247 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 4 14 1.2e-11 1.4e-08 34.7 1.1 1 26 250 275 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 5 14 4.4e-09 5.2e-06 26.6 7.2 2 26 279 303 278 303 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 6 14 1.1e-11 1.3e-08 34.8 0.8 1 25 306 330 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 7 14 9.8e-12 1.2e-08 35.0 2.5 1 25 334 358 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 8 14 1.1e-10 1.3e-07 31.7 2.6 2 25 363 386 362 387 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 9 14 3.3e-11 4e-08 33.3 1.5 2 25 391 414 390 415 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 10 14 6.8e-10 8.1e-07 29.2 1.4 2 25 419 442 418 443 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 11 14 3.2e-10 3.8e-07 30.2 2.7 1 26 446 471 446 471 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 12 14 1.1e-05 0.013 15.9 0.1 2 25 475 498 475 499 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 13 14 1.5e-11 1.8e-08 34.4 1.2 1 25 502 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF720-209 - 543 3.8e-81 264.2 130.6 14 14 0.13 1.5e+02 3.0 0.4 2 13 531 542 530 543 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 1 14 8.3 9.9e+03 -2.6 1.8 17 23 141 147 141 147 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 2 14 2.1 2.6e+03 -0.8 0.4 2 14 181 193 181 194 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 3 14 0.22 2.7e+02 2.3 0.6 6 23 210 230 208 230 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 4 14 4.3e-08 5.1e-05 23.5 4.1 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 5 14 3.4e-09 4e-06 27.0 2.2 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 6 14 1.4e-07 0.00016 21.9 5.6 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 7 14 6.4e-09 7.6e-06 26.1 0.6 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 8 14 4.8e-06 0.0057 17.1 5.1 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 9 14 4.1e-09 4.9e-06 26.7 2.1 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 10 14 3.6e-06 0.0043 17.4 3.2 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 11 14 4.2e-07 0.0005 20.4 2.2 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 12 14 2.9e-06 0.0035 17.7 5.8 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 13 14 6e-10 7.2e-07 29.3 0.7 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF720-209 - 543 4.1e-49 162.4 145.3 14 14 6.7e-07 0.0008 19.7 4.4 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 1 13 7.1 8.4e+03 -1.8 0.4 2 11 181 190 181 196 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 2 13 1.6 1.9e+03 0.2 0.3 3 23 210 230 208 231 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 3 13 0.00081 0.97 10.5 2.8 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 4 13 6.2e-06 0.0075 17.0 1.6 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 5 13 0.0012 1.4 9.9 4.9 1 23 292 314 292 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 6 13 3.2e-06 0.0038 17.9 0.8 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 7 13 6.6e-05 0.079 13.8 4.1 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 8 13 4.2e-06 0.005 17.6 1.9 1 23 376 398 376 399 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 9 13 8e-06 0.0096 16.7 2.7 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 10 13 4.8e-06 0.0057 17.4 2.0 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 11 13 0.00044 0.53 11.3 5.5 1 23 460 482 460 483 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 12 13 8e-06 0.0096 16.7 0.3 1 23 488 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF720-209 - 543 1.2e-23 81.8 133.0 13 13 4.7e-05 0.057 14.3 3.4 1 23 516 538 516 539 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF720-209 - 543 1.9e-23 81.8 0.2 1 1 3e-26 3.5e-23 81.0 0.2 2 42 6 46 5 46 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 1 11 0.00015 0.18 12.1 2.2 2 21 236 255 235 256 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 2 11 4.7e-05 0.056 13.7 0.4 2 22 264 284 263 284 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 3 11 0.034 41 4.6 2.7 2 22 292 312 291 312 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 4 11 6.4e-05 0.076 13.3 0.1 2 22 320 340 319 340 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 5 11 0.031 37 4.8 2.6 2 21 348 367 347 368 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 6 11 0.00021 0.26 11.6 0.2 2 22 376 396 375 396 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 7 11 0.0098 12 6.4 0.9 2 22 404 424 403 424 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 8 11 0.0022 2.6 8.4 0.6 2 22 432 452 431 452 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 9 11 0.01 12 6.3 2.6 2 15 460 473 459 482 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 10 11 0.0025 3 8.3 0.0 2 21 488 507 487 507 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF720-209 - 543 7.2e-14 51.6 73.3 11 11 0.011 13 6.2 0.6 2 21 516 535 515 536 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 1 11 1.4 1.6e+03 -0.7 5.1 10 32 157 185 152 189 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 2 11 0.00025 0.29 11.3 5.5 6 34 236 271 235 276 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 3 11 0.00049 0.58 10.3 5.7 6 33 264 298 263 302 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 4 11 7.8e-05 0.093 12.9 4.6 6 34 292 327 291 332 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 5 11 0.0014 1.7 8.8 7.3 6 34 320 355 319 360 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 6 11 0.0012 1.5 9.0 5.6 6 38 348 387 347 389 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 7 11 7.9e-06 0.0094 16.0 2.6 6 34 376 411 375 414 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 8 11 1.5e-05 0.018 15.2 5.5 6 34 404 439 403 443 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 9 11 0.00087 1 9.5 2.2 6 33 460 494 459 500 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 10 11 7.8e-05 0.093 12.9 2.7 6 35 488 524 487 529 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF720-209 - 543 5.2e-09 36.1 74.2 11 11 0.0049 5.8 7.1 0.9 6 17 516 527 514 535 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 1 13 9.4 1.1e+04 -3.4 1.3 3 11 181 189 181 189 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 2 13 0.22 2.6e+02 1.8 0.2 11 24 217 230 207 233 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 3 13 0.0089 11 6.2 3.6 2 12 236 246 236 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 4 13 0.00021 0.25 11.4 1.3 2 13 264 275 264 276 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 5 13 0.21 2.6e+02 1.8 2.6 2 11 292 301 291 307 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 6 13 3.7e-05 0.045 13.8 1.1 2 21 320 339 320 344 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 7 13 0.0025 2.9 8.0 2.5 2 12 348 358 348 368 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 8 13 3.8e-05 0.045 13.8 1.2 2 22 376 396 375 400 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 9 13 0.0018 2.2 8.4 2.0 2 12 404 414 404 422 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 10 13 0.00045 0.54 10.3 2.4 2 22 432 452 432 456 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 11 13 0.0029 3.4 7.8 1.7 2 12 460 470 459 471 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 12 13 0.034 41 4.3 0.1 2 20 488 506 488 510 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF720-209 - 543 2.1e-08 34.0 107.4 13 13 0.00021 0.26 11.4 3.6 2 24 516 538 516 541 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- FRG2 PF15315.6 184 ZNF720-210 - 118 5.2e-06 26.8 0.4 1 1 3.8e-10 6.8e-06 26.4 0.4 32 99 40 111 7 116 0.77 Facioscapulohumeral muscular dystrophy candidate 2 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 1 15 2.1 1.4e+03 -0.0 0.0 10 19 140 149 137 152 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 2 15 1.8e-10 1.2e-07 31.8 1.4 3 25 161 183 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 3 15 1.6e-10 1.1e-07 31.9 1.6 2 25 188 211 187 211 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 4 15 3.1e-10 2.2e-07 31.0 2.6 1 25 215 239 215 240 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 5 15 1.9e-10 1.3e-07 31.7 0.9 2 26 244 268 243 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 6 15 1.4e-11 9.7e-09 35.3 1.1 1 26 271 296 271 296 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 7 15 2.8e-10 1.9e-07 31.2 1.6 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 8 15 1.3e-10 8.9e-08 32.2 2.1 2 26 328 352 328 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 9 15 9.2e-10 6.4e-07 29.5 0.5 1 25 355 379 355 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 10 15 1.5e-10 1e-07 32.0 3.1 1 26 383 408 383 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 11 15 2.4e-09 1.6e-06 28.2 1.6 1 26 411 436 411 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 12 15 2e-11 1.4e-08 34.8 1.2 2 26 440 464 440 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 13 15 8.1e-11 5.6e-08 32.9 3.4 1 26 467 492 467 492 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 14 15 1.1e-11 7.5e-09 35.6 3.2 2 25 496 519 495 520 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF737-201 - 536 4.6e-106 342.9 124.4 15 15 0.5 3.5e+02 1.9 0.2 2 13 524 535 523 536 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 1 13 3.5e-06 0.0024 18.2 0.8 1 23 173 195 173 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 2 13 9.6e-07 0.00066 20.0 1.6 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 3 13 3.8e-08 2.6e-05 24.4 0.5 1 23 229 251 229 251 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 4 13 3.5e-09 2.4e-06 27.7 0.6 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 5 13 7.8e-07 0.00054 20.3 0.2 1 23 285 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 6 13 5e-08 3.5e-05 24.0 1.4 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 7 13 5.4e-07 0.00037 20.8 0.9 1 23 341 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 8 13 6.4e-07 0.00044 20.5 1.6 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 9 13 2.1e-07 0.00015 22.1 0.4 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 10 13 0.0014 0.94 10.1 2.7 1 23 425 447 425 447 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 11 13 3.6e-09 2.5e-06 27.6 1.4 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 12 13 2e-06 0.0014 19.0 1.9 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF737-201 - 536 2e-63 207.4 96.9 13 13 2.8e-05 0.02 15.4 1.6 1 23 509 531 509 531 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 1 13 4.8e-05 0.033 15.0 0.6 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 2 13 0.00062 0.43 11.5 1.6 1 23 201 223 201 224 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 3 13 8.2e-05 0.057 14.3 0.5 1 23 229 251 229 252 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 4 13 2e-05 0.014 16.2 0.5 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 5 13 0.00015 0.1 13.5 0.2 1 23 285 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 6 13 0.00036 0.25 12.3 1.3 1 23 313 335 313 336 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 7 13 6.7e-05 0.046 14.6 0.8 1 23 341 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 8 13 0.00059 0.41 11.6 1.4 1 23 369 391 369 392 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 9 13 6e-05 0.041 14.7 0.4 1 23 397 419 397 420 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 10 13 0.00021 0.14 13.0 2.6 1 23 425 447 425 448 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 11 13 5.3e-06 0.0036 18.0 1.2 1 23 453 475 453 476 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 12 13 0.00016 0.11 13.4 1.3 1 23 481 503 481 504 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF737-201 - 536 5e-37 123.4 94.4 13 13 1.4e-05 0.0096 16.7 1.5 1 23 509 531 509 532 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 1 13 0.0011 0.76 9.9 0.9 2 24 173 195 173 198 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 2 13 0.0018 1.3 9.1 1.6 2 24 201 223 201 226 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 3 13 0.00053 0.37 10.9 0.6 1 24 228 251 228 254 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 4 13 9.4e-06 0.0065 16.4 0.7 2 24 257 279 257 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 5 13 0.00075 0.52 10.4 0.4 2 24 285 307 285 310 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 6 13 0.00018 0.12 12.4 1.2 2 24 313 335 313 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 7 13 1e-06 0.0007 19.5 1.1 2 24 341 363 341 366 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 8 13 0.0015 1.1 9.4 1.6 2 24 369 391 369 394 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 9 13 2.2e-05 0.015 15.3 1.0 2 24 397 419 397 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 10 13 0.0011 0.73 9.9 2.4 2 24 425 447 425 450 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 11 13 3.7e-05 0.026 14.5 2.0 2 24 453 475 453 478 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 12 13 0.11 73 3.5 0.6 2 13 481 492 481 505 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF737-201 - 536 6.2e-24 83.5 99.3 13 13 0.031 21 5.2 2.0 2 12 509 519 509 531 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF737-201 - 536 4.4e-23 80.6 0.1 1 1 1.2e-25 8.3e-23 79.8 0.1 2 42 4 44 3 44 0.97 KRAB box XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 1 13 0.0014 0.98 9.5 0.1 3 14 174 185 172 192 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 2 13 0.0026 1.8 8.7 0.2 3 14 202 213 200 219 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 3 13 0.0065 4.5 7.4 0.1 3 16 230 244 228 247 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 4 13 0.00084 0.58 10.2 0.1 3 14 258 269 256 275 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 5 13 0.00062 0.43 10.7 0.1 3 14 286 297 284 303 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 6 13 0.0033 2.3 8.4 0.1 3 12 314 323 312 331 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 7 13 0.018 13 6.0 0.2 3 12 342 351 340 352 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 8 13 0.0021 1.5 8.9 0.1 3 14 370 381 368 387 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 9 13 0.0056 3.8 7.6 0.2 3 14 398 409 396 415 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 10 13 0.015 10 6.3 1.4 3 12 426 435 424 442 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 11 13 0.00098 0.68 10.0 0.2 3 14 454 465 452 470 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 12 13 0.0006 0.41 10.7 0.1 3 18 482 497 480 500 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF737-201 - 536 7.8e-22 77.0 57.1 13 13 0.012 8.6 6.5 0.7 3 12 510 519 508 526 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 1 13 0.00017 0.12 12.7 0.1 2 22 173 193 172 193 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 2 13 0.0064 4.4 7.7 0.2 2 21 201 220 200 221 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 3 13 0.35 2.4e+02 2.2 0.4 2 13 229 240 228 248 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 4 13 0.00012 0.085 13.2 0.1 2 21 257 276 256 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 5 13 0.00064 0.44 10.9 0.1 2 21 285 304 284 305 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 6 13 7.1e-05 0.049 13.9 0.1 2 22 313 333 312 333 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 7 13 0.17 1.2e+02 3.2 0.3 2 12 341 351 340 360 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 8 13 0.012 8.4 6.8 0.2 2 21 369 388 368 389 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 9 13 0.11 73 3.8 0.1 2 21 397 416 396 417 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 10 13 0.054 37 4.8 0.5 2 12 425 435 424 435 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 11 13 4.6e-05 0.032 14.5 0.2 2 22 453 473 452 473 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 12 13 0.23 1.6e+02 2.7 0.1 2 21 481 500 480 501 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF737-201 - 536 5.6e-19 67.9 60.7 13 13 0.0018 1.3 9.4 0.1 2 20 509 527 508 528 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 1 14 1.1 7.5e+02 -0.2 0.0 24 29 80 85 80 86 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 2 14 0.054 37 4.0 0.1 3 20 173 191 171 192 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 3 14 0.013 8.9 6.0 0.2 3 13 201 211 199 220 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 4 14 0.0049 3.4 7.4 0.1 2 14 228 240 227 247 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 5 14 0.0016 1.1 8.9 0.1 3 20 257 275 255 276 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 6 14 0.0036 2.4 7.8 0.1 3 15 285 297 283 304 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 7 14 0.0023 1.6 8.4 0.2 3 16 313 326 311 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 8 14 0.019 13 5.5 0.1 3 14 341 352 339 360 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 9 14 0.0077 5.3 6.7 0.2 3 13 369 379 367 388 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 10 14 0.0076 5.2 6.7 0.2 3 20 397 415 395 416 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 11 14 0.0094 6.5 6.4 0.8 3 15 425 437 423 444 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 12 14 0.0021 1.4 8.5 0.2 3 17 453 468 451 472 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 13 14 0.003 2.1 8.0 0.1 3 14 481 492 479 500 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF737-201 - 536 6.8e-15 54.4 61.1 14 14 0.0041 2.8 7.6 0.7 3 20 509 527 507 528 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 1 13 0.013 9.3 6.5 4.8 6 34 173 208 172 211 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 2 13 0.019 13 6.0 0.7 6 16 201 211 199 222 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 3 13 3.5e-05 0.024 14.7 5.8 6 38 229 268 227 269 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 4 13 9.5e-05 0.066 13.3 6.1 6 38 257 296 256 297 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 5 13 0.00048 0.33 11.1 6.7 6 35 285 321 284 324 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 6 13 0.00062 0.43 10.7 6.5 6 34 313 348 312 351 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 7 13 0.0011 0.76 9.9 6.7 6 34 341 376 340 377 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 8 13 0.0005 0.35 11.0 6.8 6 35 369 405 367 407 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 9 13 0.0072 4.9 7.3 7.7 6 35 397 433 396 435 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 10 13 0.0075 5.2 7.3 8.4 6 34 425 460 424 463 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 11 13 2.1e-05 0.014 15.5 4.5 6 38 453 492 452 494 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 12 13 0.00068 0.47 10.6 6.2 6 34 481 516 480 519 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF737-201 - 536 7.4e-12 45.2 85.7 13 13 0.027 19 5.5 2.0 6 16 509 519 508 528 0.89 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 1 13 0.16 1.1e+02 2.8 0.2 3 14 171 182 169 186 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 2 13 0.0017 1.1 9.1 0.2 3 18 199 214 197 215 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 3 13 0.017 11 6.0 0.2 3 14 227 238 225 242 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 4 13 0.039 27 4.7 0.2 3 14 255 266 253 271 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 5 13 0.043 29 4.6 0.2 3 14 283 294 281 298 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 6 13 0.041 29 4.7 0.1 3 14 311 322 309 325 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 7 13 0.016 11 6.0 0.1 3 17 339 353 337 355 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 8 13 0.0021 1.5 8.8 0.1 3 18 367 382 365 383 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 9 13 0.014 9.3 6.2 0.1 3 17 395 409 393 415 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 10 13 0.12 80 3.2 0.9 3 14 423 434 418 438 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 11 13 0.037 26 4.8 0.1 3 14 451 462 449 467 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 12 13 0.056 39 4.3 0.2 3 14 479 490 476 493 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF737-201 - 536 2.6e-09 36.8 54.8 13 13 0.078 54 3.8 0.2 3 14 507 518 505 519 0.86 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 1 13 0.038 26 4.7 0.1 5 24 173 192 171 195 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 2 13 0.069 48 3.8 0.1 5 26 201 222 198 223 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 3 13 0.13 91 2.9 0.2 5 16 229 240 227 251 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 4 13 0.099 68 3.3 0.1 5 23 257 275 254 279 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 5 13 0.13 88 3.0 0.1 5 20 285 300 282 307 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 6 13 0.11 72 3.3 0.0 5 26 313 334 310 335 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 7 13 0.006 4.1 7.2 0.1 5 26 341 362 338 363 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 8 13 0.066 45 3.9 0.1 5 26 369 390 366 391 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 9 13 0.0084 5.8 6.8 0.0 5 26 397 418 394 419 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 10 13 0.22 1.5e+02 2.2 0.6 5 14 425 434 423 446 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 11 13 0.0021 1.4 8.7 0.1 5 26 453 474 450 475 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 12 13 0.006 4.2 7.2 0.3 5 26 481 502 478 503 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF737-201 - 536 1.3e-08 34.4 47.3 13 13 0.16 1.1e+02 2.7 0.2 5 23 509 527 506 531 0.76 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF737-204 - 131 6.7e-24 83.3 0.1 1 1 5.1e-28 9.2e-24 82.8 0.1 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF746-201 - 644 3.7e-19 68.0 31.6 1 4 2.4e-05 0.023 15.1 0.2 1 21 453 473 453 474 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-201 - 644 3.7e-19 68.0 31.6 2 4 7.2e-08 6.8e-05 23.1 2.8 2 23 511 532 510 532 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-201 - 644 3.7e-19 68.0 31.6 3 4 1.4e-06 0.0013 19.1 1.4 1 23 538 560 538 560 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-201 - 644 3.7e-19 68.0 31.6 4 4 2.3e-09 2.2e-06 27.8 3.8 1 23 566 588 566 588 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF746-201 - 644 3.8e-12 46.0 28.2 1 5 0.0019 1.8 9.2 1.1 7 24 441 462 436 462 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-201 - 644 3.8e-12 46.0 28.2 2 5 3.4 3.2e+03 -1.1 0.3 16 26 511 521 508 521 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-201 - 644 3.8e-12 46.0 28.2 3 5 1.9e-08 1.8e-05 25.0 1.8 1 25 524 548 524 549 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-201 - 644 3.8e-12 46.0 28.2 4 5 5e-09 4.7e-06 26.8 0.4 3 24 554 575 552 577 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-201 - 644 3.8e-12 46.0 28.2 5 5 0.26 2.5e+02 2.4 0.4 1 9 580 588 580 595 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF746-201 - 644 7.6e-11 41.9 27.2 1 4 0.008 7.5 7.7 1.1 1 22 453 474 453 475 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-201 - 644 7.6e-11 41.9 27.2 2 4 0.00035 0.33 11.9 2.0 2 23 511 532 510 533 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-201 - 644 7.6e-11 41.9 27.2 3 4 8.1e-06 0.0076 17.0 0.9 1 23 538 560 538 561 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-201 - 644 7.6e-11 41.9 27.2 4 4 5e-07 0.00048 20.7 1.9 1 23 566 588 566 589 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF746-201 - 644 3.4e-10 39.4 0.3 1 2 8 7.6e+03 -3.3 0.2 32 38 81 87 80 88 0.87 KRAB box KRAB PF01352.27 42 ZNF746-201 - 644 3.4e-10 39.4 0.3 2 2 3.6e-13 3.4e-10 39.4 0.3 12 42 106 136 106 136 0.97 KRAB box DUF3669 PF12417.8 72 ZNF746-201 - 644 1.2e-09 38.3 0.4 1 2 3.2e-12 3e-09 37.0 0.1 4 71 25 80 11 81 0.90 Zinc finger protein DUF3669 PF12417.8 72 ZNF746-201 - 644 1.2e-09 38.3 0.4 2 2 6.3 5.9e+03 -2.5 0.0 31 41 318 328 315 340 0.63 Zinc finger protein zf-C2H2_jaz PF12171.8 27 ZNF746-201 - 644 2.3e-06 27.8 5.2 1 3 0.0068 6.4 7.2 0.0 2 23 453 474 452 474 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-201 - 644 2.3e-06 27.8 5.2 2 3 0.0019 1.8 9.0 0.1 2 24 538 560 537 560 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-201 - 644 2.3e-06 27.8 5.2 3 3 0.00017 0.16 12.3 0.3 2 23 566 587 565 589 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF746-202 - 645 3.7e-19 68.0 31.6 1 4 2.4e-05 0.023 15.1 0.2 1 21 454 474 454 475 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-202 - 645 3.7e-19 68.0 31.6 2 4 7.2e-08 6.8e-05 23.1 2.8 2 23 512 533 511 533 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-202 - 645 3.7e-19 68.0 31.6 3 4 1.4e-06 0.0013 19.1 1.4 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-202 - 645 3.7e-19 68.0 31.6 4 4 2.3e-09 2.2e-06 27.8 3.8 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF746-202 - 645 3.9e-12 46.0 28.2 1 5 0.0019 1.8 9.1 1.1 7 24 442 463 437 463 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-202 - 645 3.9e-12 46.0 28.2 2 5 3.4 3.2e+03 -1.1 0.3 16 26 512 522 509 522 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-202 - 645 3.9e-12 46.0 28.2 3 5 1.9e-08 1.8e-05 25.0 1.8 1 25 525 549 525 550 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-202 - 645 3.9e-12 46.0 28.2 4 5 5e-09 4.8e-06 26.8 0.4 3 24 555 576 553 578 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-202 - 645 3.9e-12 46.0 28.2 5 5 0.26 2.5e+02 2.4 0.4 1 9 581 589 581 596 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF746-202 - 645 7.6e-11 41.9 27.2 1 4 0.008 7.5 7.7 1.1 1 22 454 475 454 476 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-202 - 645 7.6e-11 41.9 27.2 2 4 0.00036 0.34 11.9 2.0 2 23 512 533 511 534 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-202 - 645 7.6e-11 41.9 27.2 3 4 8.1e-06 0.0076 17.0 0.9 1 23 539 561 539 562 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-202 - 645 7.6e-11 41.9 27.2 4 4 5.1e-07 0.00048 20.7 1.9 1 23 567 589 567 590 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF746-202 - 645 3.4e-10 39.4 0.3 1 2 8 7.6e+03 -3.3 0.2 32 38 81 87 80 88 0.87 KRAB box KRAB PF01352.27 42 ZNF746-202 - 645 3.4e-10 39.4 0.3 2 2 3.6e-13 3.4e-10 39.4 0.3 12 42 106 136 106 136 0.97 KRAB box DUF3669 PF12417.8 72 ZNF746-202 - 645 1.2e-09 38.3 0.4 1 2 3.2e-12 3e-09 36.9 0.1 4 71 25 80 11 81 0.90 Zinc finger protein DUF3669 PF12417.8 72 ZNF746-202 - 645 1.2e-09 38.3 0.4 2 2 6.3 6e+03 -2.5 0.0 31 41 319 329 316 341 0.63 Zinc finger protein zf-C2H2_jaz PF12171.8 27 ZNF746-202 - 645 2.3e-06 27.8 5.2 1 3 0.0068 6.4 7.2 0.0 2 23 454 475 453 475 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-202 - 645 2.3e-06 27.8 5.2 2 3 0.0019 1.8 9.0 0.1 2 24 539 561 538 561 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-202 - 645 2.3e-06 27.8 5.2 3 3 0.00017 0.16 12.3 0.3 2 23 567 588 566 590 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF746-203 - 187 6.6e-11 41.7 0.3 1 2 0.19 1.7e+03 -1.3 0.1 32 38 81 87 79 88 0.88 KRAB box KRAB PF01352.27 42 ZNF746-203 - 187 6.6e-11 41.7 0.3 2 2 7.3e-15 6.6e-11 41.7 0.3 12 42 106 136 106 136 0.97 KRAB box DUF3669 PF12417.8 72 ZNF746-203 - 187 2.7e-10 40.3 0.1 1 1 4.3e-14 3.9e-10 39.8 0.1 4 71 25 80 11 81 0.89 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF746-205 - 659 6e-20 70.6 0.5 1 2 7.8 7.8e+03 -3.4 0.2 32 38 81 87 80 88 0.87 KRAB box KRAB PF01352.27 42 ZNF746-205 - 659 6e-20 70.6 0.5 2 2 6e-23 6e-20 70.6 0.5 1 42 110 151 110 151 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF746-205 - 659 4.2e-19 67.9 31.6 1 4 2.4e-05 0.024 15.1 0.2 1 21 468 488 468 489 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-205 - 659 4.2e-19 67.9 31.6 2 4 7e-08 7e-05 23.1 2.8 2 23 526 547 525 547 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-205 - 659 4.2e-19 67.9 31.6 3 4 1.3e-06 0.0013 19.0 1.4 1 23 553 575 553 575 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF746-205 - 659 4.2e-19 67.9 31.6 4 4 2.3e-09 2.3e-06 27.8 3.8 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF746-205 - 659 4.3e-12 45.9 28.2 1 5 0.0018 1.8 9.1 1.1 7 24 456 477 451 477 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-205 - 659 4.3e-12 45.9 28.2 2 5 3.3 3.3e+03 -1.2 0.3 16 26 526 536 523 536 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-205 - 659 4.3e-12 45.9 28.2 3 5 1.8e-08 1.8e-05 24.9 1.8 1 25 539 563 539 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-205 - 659 4.3e-12 45.9 28.2 4 5 4.9e-09 4.9e-06 26.7 0.4 3 24 569 590 567 592 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF746-205 - 659 4.3e-12 45.9 28.2 5 5 0.25 2.5e+02 2.4 0.4 1 9 595 603 595 610 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF746-205 - 659 8.4e-11 41.8 27.2 1 4 0.0078 7.7 7.6 1.1 1 22 468 489 468 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-205 - 659 8.4e-11 41.8 27.2 2 4 0.00035 0.34 11.9 2.0 2 23 526 547 525 548 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-205 - 659 8.4e-11 41.8 27.2 3 4 7.9e-06 0.0078 17.0 0.9 1 23 553 575 553 576 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF746-205 - 659 8.4e-11 41.8 27.2 4 4 4.9e-07 0.00049 20.7 1.9 1 23 581 603 581 604 0.97 C2H2-type zinc finger DUF3669 PF12417.8 72 ZNF746-205 - 659 1.2e-09 38.3 0.4 1 2 3.1e-12 3.1e-09 36.9 0.1 4 71 25 80 11 81 0.90 Zinc finger protein DUF3669 PF12417.8 72 ZNF746-205 - 659 1.2e-09 38.3 0.4 2 2 6.1 6.1e+03 -2.5 0.0 31 41 333 343 330 355 0.63 Zinc finger protein zf-C2H2_jaz PF12171.8 27 ZNF746-205 - 659 2.4e-06 27.7 5.2 1 3 0.0066 6.6 7.1 0.0 2 23 468 489 467 489 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-205 - 659 2.4e-06 27.7 5.2 2 3 0.0018 1.8 8.9 0.1 2 24 553 575 552 575 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF746-205 - 659 2.4e-06 27.7 5.2 3 3 0.00017 0.17 12.2 0.3 2 23 581 602 580 604 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 1 9 1e-06 0.0015 18.9 0.2 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 2 9 2.1e-06 0.0031 17.9 4.2 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 3 9 0.0072 11 6.7 6.5 1 21 433 453 433 455 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 4 9 2.6e-07 0.00038 20.7 0.2 1 23 817 839 817 839 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 5 9 0.013 19 5.9 2.7 1 23 845 867 845 867 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 6 9 0.00055 0.82 10.2 0.9 1 23 897 919 897 919 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 7 9 4.2 6.3e+03 -2.0 0.5 3 23 931 952 930 952 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 8 9 6.2e-05 0.093 13.2 3.2 1 23 1019 1041 1019 1041 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-201 - 1077 3.1e-15 55.7 76.8 9 9 0.031 47 4.7 3.7 1 21 1047 1067 1047 1069 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 1 7 0.029 43 4.0 0.1 11 26 384 398 374 398 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 2 7 3.9e-06 0.0059 16.3 5.1 2 24 403 424 402 426 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 3 7 0.001 1.5 8.6 6.7 1 24 433 455 433 457 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 4 7 0.67 1e+03 -0.4 0.5 15 25 831 840 828 841 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 5 7 3.8e-07 0.00057 19.6 3.1 1 25 845 868 845 868 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 6 7 8.6e-06 0.013 15.3 0.0 3 26 931 954 931 954 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-201 - 1077 4.3e-14 52.0 51.3 7 7 4.5e-05 0.067 13.0 0.6 2 24 1020 1041 1019 1042 0.94 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 1 9 5.5e-05 0.083 13.8 0.3 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 2 9 0.00025 0.37 11.7 3.6 1 23 402 424 402 425 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 3 9 0.11 1.6e+02 3.5 5.9 1 21 433 453 433 455 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 4 9 1.8e-06 0.0026 18.4 0.3 1 23 817 839 817 840 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 5 9 0.011 16 6.6 2.7 1 23 845 867 845 868 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 6 9 0.084 1.3e+02 3.9 1.0 1 23 897 919 897 920 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 7 9 0.17 2.5e+02 3.0 0.2 2 24 930 952 929 952 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 8 9 0.0033 4.9 8.2 3.0 1 23 1019 1041 1019 1042 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-201 - 1077 9e-08 32.3 75.8 9 9 0.035 52 5.1 3.9 1 21 1047 1067 1047 1069 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 1 12 0.015 22 5.7 0.1 13 21 372 380 367 385 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 2 12 1.3e-06 0.0019 18.5 2.6 3 23 390 410 388 413 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 3 12 2e-05 0.029 14.8 0.7 1 24 416 442 416 444 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 4 12 3.8 5.7e+03 -1.9 1.6 1 9 447 455 447 457 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 5 12 0.014 21 5.8 0.2 15 25 817 827 811 828 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 6 12 3.9e-07 0.00059 20.2 4.7 2 25 832 855 831 856 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 7 12 4.7 7e+03 -2.2 3.8 1 12 859 870 859 906 0.53 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 8 12 0.18 2.8e+02 2.2 0.2 3 22 913 936 911 938 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 9 12 0.41 6.1e+02 1.1 0.4 4 13 946 956 944 959 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 10 12 0.17 2.5e+02 2.3 3.1 10 26 1014 1030 1011 1030 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 11 12 0.00011 0.17 12.4 0.8 2 23 1034 1055 1033 1058 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-201 - 1077 1.6e-07 31.4 85.7 12 12 0.85 1.3e+03 0.1 0.1 4 13 1064 1073 1061 1074 0.84 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 1 9 1e-06 0.0015 18.9 0.2 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 2 9 2.1e-06 0.0031 17.9 4.2 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 3 9 0.0073 11 6.7 6.5 1 21 433 453 433 455 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 4 9 2.6e-07 0.00038 20.7 0.2 1 23 817 839 817 839 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 5 9 0.013 19 5.9 2.7 1 23 845 867 845 867 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 6 9 0.00055 0.83 10.2 0.9 1 23 897 919 897 919 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 7 9 4.3 6.4e+03 -2.0 0.5 3 23 931 952 930 952 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 8 9 6.2e-05 0.093 13.2 3.2 1 23 1019 1041 1019 1041 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-203 - 1081 3.2e-15 55.6 76.8 9 9 0.031 47 4.7 3.7 1 21 1047 1067 1047 1069 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 1 7 0.029 44 4.0 0.1 11 26 384 398 374 398 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 2 7 4e-06 0.0059 16.3 5.1 2 24 403 424 402 426 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 3 7 0.001 1.5 8.6 6.7 1 24 433 455 433 457 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 4 7 0.67 1e+03 -0.4 0.5 15 25 831 840 828 841 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 5 7 3.9e-07 0.00058 19.6 3.1 1 25 845 868 845 868 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 6 7 8.7e-06 0.013 15.2 0.0 3 26 931 954 931 954 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-203 - 1081 4.4e-14 51.9 51.3 7 7 4.5e-05 0.067 13.0 0.6 2 24 1020 1041 1019 1042 0.94 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 1 9 5.6e-05 0.083 13.8 0.3 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 2 9 0.00025 0.38 11.7 3.6 1 23 402 424 402 425 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 3 9 0.11 1.7e+02 3.5 5.9 1 21 433 453 433 455 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 4 9 1.8e-06 0.0026 18.4 0.3 1 23 817 839 817 840 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 5 9 0.011 16 6.6 2.7 1 23 845 867 845 868 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 6 9 0.085 1.3e+02 3.9 1.0 1 23 897 919 897 920 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 7 9 0.17 2.5e+02 3.0 0.2 2 24 930 952 929 952 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 8 9 0.0033 5 8.2 3.0 1 23 1019 1041 1019 1042 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-203 - 1081 9.3e-08 32.3 75.8 9 9 0.035 53 5.1 3.9 1 21 1047 1067 1047 1069 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 1 12 0.015 23 5.7 0.1 13 21 372 380 367 385 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 2 12 1.3e-06 0.0019 18.5 2.6 3 23 390 410 388 413 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 3 12 2e-05 0.03 14.8 0.7 1 24 416 442 416 444 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 4 12 3.8 5.7e+03 -1.9 1.6 1 9 447 455 447 457 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 5 12 0.014 21 5.8 0.2 15 25 817 827 811 828 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 6 12 3.9e-07 0.00059 20.2 4.7 2 25 832 855 831 856 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 7 12 4.7 7e+03 -2.2 3.8 1 12 859 870 859 906 0.53 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 8 12 0.19 2.8e+02 2.2 0.2 3 22 913 936 911 938 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 9 12 0.41 6.1e+02 1.1 0.4 4 13 946 956 944 959 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 10 12 0.17 2.5e+02 2.3 3.1 10 26 1014 1030 1011 1030 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 11 12 0.00012 0.17 12.4 0.8 2 23 1034 1055 1033 1058 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-203 - 1081 1.7e-07 31.3 85.7 12 12 0.85 1.3e+03 0.1 0.1 4 13 1064 1073 1061 1074 0.84 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF827-204 - 79 5.9e-07 29.1 19.7 1 2 8.3e-08 0.00017 21.3 5.1 1 24 10 32 10 34 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-204 - 79 5.9e-07 29.1 19.7 2 2 2.1e-05 0.043 13.6 6.7 1 24 41 63 41 65 0.95 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF827-204 - 79 8.8e-07 29.0 18.5 1 2 1.4e-07 0.00028 21.2 6.0 1 23 10 32 10 34 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-204 - 79 8.8e-07 29.0 18.5 2 2 3.3e-05 0.066 13.7 4.5 1 21 41 61 41 65 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF827-204 - 79 9.1e-07 29.0 16.6 1 3 2.9e-06 0.0058 17.0 0.6 8 23 3 18 1 21 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-204 - 79 9.1e-07 29.0 16.6 2 3 7.1e-07 0.0014 18.9 1.7 1 24 24 50 24 53 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-204 - 79 9.1e-07 29.0 16.6 3 3 0.092 1.8e+02 2.8 1.1 1 9 55 63 55 66 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF827-207 - 162 1.8e-07 30.8 7.4 1 3 9.6e-07 0.0012 18.5 0.0 3 26 16 39 16 39 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-207 - 162 1.8e-07 30.8 7.4 2 3 5e-06 0.0064 16.2 0.6 2 24 105 126 104 127 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-207 - 162 1.8e-07 30.8 7.4 3 3 5.2 6.6e+03 -3.0 0.3 12 25 143 155 142 155 0.63 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 1 9 7e-07 0.00096 19.5 0.2 1 23 24 46 24 46 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 2 9 1.5e-06 0.002 18.5 4.2 1 23 52 74 52 74 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 3 9 0.005 7 7.3 6.5 1 21 83 103 83 105 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 4 9 1.8e-07 0.00025 21.3 0.2 1 23 467 489 467 489 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 5 9 0.009 12 6.5 2.7 1 23 495 517 495 517 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 6 9 0.00038 0.53 10.8 0.9 1 23 547 569 547 569 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 7 9 3 4.1e+03 -1.4 0.5 3 23 581 602 580 602 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 8 9 4.3e-05 0.06 13.8 3.2 1 23 669 691 669 691 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF827-208 - 731 8e-17 60.7 76.8 9 9 0.022 30 5.3 3.7 1 21 697 717 697 719 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 1 7 0.021 28 4.6 0.1 11 26 34 48 24 48 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 2 7 2.8e-06 0.0038 16.9 5.1 2 24 53 74 52 76 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 3 7 0.00071 0.97 9.2 6.7 1 24 83 105 83 107 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 4 7 0.48 6.6e+02 0.2 0.5 15 25 481 490 478 491 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 5 7 2.7e-07 0.00037 20.2 3.1 1 25 495 518 495 518 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 6 7 6e-06 0.0083 15.9 0.0 3 26 581 604 581 604 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF827-208 - 731 2.4e-15 55.9 51.3 7 7 3.1e-05 0.043 13.6 0.6 2 24 670 691 669 692 0.94 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 1 12 0.01 14 6.3 0.1 13 21 22 30 16 35 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 2 12 8.9e-07 0.0012 19.1 2.6 3 23 40 60 38 63 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 3 12 1.4e-05 0.019 15.4 0.7 1 24 66 92 66 94 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 4 12 2.7 3.8e+03 -1.4 1.6 1 9 97 105 97 107 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 5 12 0.0098 14 6.4 0.2 15 25 467 477 461 478 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 6 12 2.7e-07 0.00038 20.8 4.7 2 25 482 505 481 506 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 7 12 2.7 3.7e+03 -1.3 3.5 1 12 509 520 509 556 0.53 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 8 12 0.13 1.8e+02 2.8 0.2 3 22 563 586 561 588 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 9 12 0.29 4e+02 1.7 0.4 4 13 596 606 594 609 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 10 12 0.12 1.6e+02 2.9 3.1 10 26 664 680 661 680 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 11 12 8e-05 0.11 13.0 0.8 2 23 684 705 683 708 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF827-208 - 731 6.7e-10 38.9 85.2 12 12 0.6 8.3e+02 0.7 0.1 4 13 714 723 711 724 0.84 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 1 9 3.8e-05 0.053 14.4 0.3 1 23 24 46 24 47 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 2 9 0.00017 0.24 12.3 3.6 1 23 52 74 52 75 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 3 9 0.077 1.1e+02 4.1 5.9 1 21 83 103 83 105 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 4 9 1.2e-06 0.0017 19.0 0.3 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 5 9 0.0076 10 7.2 2.7 1 23 495 517 495 518 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 6 9 0.059 81 4.5 1.0 1 23 547 569 547 570 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 7 9 0.12 1.6e+02 3.6 0.2 2 24 580 602 579 602 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 8 9 0.0023 3.2 8.9 3.0 1 23 669 691 669 692 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF827-208 - 731 1.9e-09 37.5 75.8 9 9 0.024 34 5.7 3.9 1 21 697 717 697 719 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_jaz PF12171.8 27 ZNF827-210 - 139 5.8e-06 26.4 9.8 1 2 4e-05 0.072 13.4 2.4 2 21 81 100 80 101 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF827-210 - 139 5.8e-06 26.4 9.8 2 2 2.4e-06 0.0043 17.3 0.9 2 22 109 129 108 129 0.96 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-201 - 345 5.4e-121 405.7 0.0 1 1 3.4e-125 6.1e-121 405.6 0.0 460 796 2 338 1 339 0.99 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-202 - 927 0 1262.5 1.6 1 1 0 0 1262.3 1.6 1 796 123 920 123 921 0.99 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-203 - 401 6.6e-153 511.3 0.0 1 1 4.1e-157 7.4e-153 511.1 0.0 402 796 1 394 1 395 1.00 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-204 - 116 2.7e-29 102.5 5.4 1 2 3.8e-30 6.7e-26 91.2 0.6 428 519 2 92 1 93 0.98 Domain of unknown function (DUF4764) DUF4764 PF15961.5 797 ZNF839-204 - 116 2.7e-29 102.5 5.4 2 2 3.1e-07 0.0056 15.5 0.6 779 796 92 109 90 110 0.93 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-205 - 166 2.3e-68 231.7 6.3 1 2 1.4e-69 2.5e-65 221.6 1.0 377 519 1 142 1 143 0.99 Domain of unknown function (DUF4764) DUF4764 PF15961.5 797 ZNF839-205 - 166 2.3e-68 231.7 6.3 2 2 5e-07 0.0089 14.8 0.5 779 796 142 159 140 160 0.93 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-206 - 811 0 1263.2 1.6 1 1 0 0 1263.0 1.6 1 796 7 804 7 805 0.99 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-207 - 441 8e-237 788.8 8.7 1 1 1e-240 9.3e-237 788.6 8.7 1 428 7 437 7 440 0.99 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-208 - 428 1.2e-172 576.6 0.0 1 1 7.4e-177 1.3e-172 576.5 0.0 377 796 1 421 1 422 1.00 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-209 - 811 0 1263.2 1.6 1 1 0 0 1263.0 1.6 1 796 7 804 7 805 0.99 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-210 - 120 3.5e-45 155.0 0.5 1 1 4.2e-49 3.8e-45 154.9 0.5 402 519 1 117 1 120 0.98 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4764 PF15961.5 797 ZNF839-212 - 426 1.3e-173 579.8 0.0 1 1 8.3e-178 1.5e-173 579.6 0.0 377 796 1 419 1 420 1.00 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF850-201 - 84 3e-24 84.4 0.7 1 1 2.4e-28 4.3e-24 83.9 0.7 1 42 6 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 1 34 0.0045 4.7 7.8 0.5 2 20 157 175 156 179 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 2 34 2e-06 0.0021 18.4 3.6 8 26 190 208 188 208 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 3 34 6.3e-07 0.00066 20.0 0.3 2 24 212 234 211 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 4 34 0.4 4.2e+02 1.6 0.3 2 18 240 256 239 262 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 5 34 8.4e-10 8.9e-07 29.1 0.6 1 26 267 292 267 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 6 34 3.4e-10 3.5e-07 30.3 1.5 2 25 296 319 295 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 7 34 3.2e-10 3.4e-07 30.4 0.2 2 26 324 348 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 8 34 3.4e-11 3.6e-08 33.5 0.3 1 25 351 375 351 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 9 34 3.4e-11 3.6e-08 33.5 0.3 1 25 379 403 379 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 10 34 3.9e-09 4.1e-06 27.0 0.1 5 25 411 431 407 432 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 11 34 2.4e-10 2.6e-07 30.8 0.2 3 26 437 460 436 460 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 12 34 3.1e-11 3.3e-08 33.6 1.5 1 25 463 487 463 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 13 34 1.5e-11 1.6e-08 34.6 1.1 3 26 493 516 492 516 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 14 34 8.8e-11 9.3e-08 32.2 1.3 1 25 519 543 519 543 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 15 34 1.2e-09 1.2e-06 28.6 0.1 5 26 551 572 547 572 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 16 34 6.9e-11 7.2e-08 32.5 1.0 1 25 575 599 575 599 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 17 34 5.9e-09 6.2e-06 26.4 0.3 4 24 606 626 604 627 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 18 34 5.3e-11 5.6e-08 32.9 0.1 2 26 632 656 631 656 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 19 34 1.3e-11 1.4e-08 34.8 0.6 1 25 659 683 659 684 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 20 34 7.1e-12 7.5e-09 35.6 1.3 2 25 688 711 687 711 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 21 34 8.6e-05 0.091 13.2 0.0 2 26 716 740 715 740 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 22 34 1.4e-09 1.5e-06 28.3 0.3 3 26 745 768 744 768 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 23 34 2.3e-08 2.5e-05 24.5 0.1 3 26 773 796 772 796 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 24 34 6.4e-08 6.8e-05 23.1 2.0 5 25 803 823 800 823 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 25 34 5.9e-08 6.2e-05 23.2 0.5 2 26 828 852 827 852 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 26 34 3.7e-10 3.9e-07 30.2 1.4 4 25 858 879 856 879 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 27 34 1.3e-09 1.3e-06 28.5 0.5 4 25 886 907 884 908 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 28 34 6.8e-11 7.2e-08 32.5 1.6 2 26 912 936 911 936 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 29 34 1.1e-09 1.1e-06 28.8 2.2 1 25 939 963 939 964 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 30 34 5.4e-10 5.7e-07 29.7 2.9 1 25 967 991 967 992 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 31 34 1.5e-10 1.5e-07 31.5 2.1 2 25 996 1019 995 1020 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 32 34 5.6e-11 6e-08 32.8 0.9 2 24 1024 1046 1023 1048 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 33 34 1.2e-12 1.2e-09 38.1 0.6 1 26 1051 1076 1051 1076 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-202 - 1090 1.6e-240 768.0 232.9 34 34 1.2 1.3e+03 0.1 0.3 2 9 1080 1087 1079 1088 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 1 33 0.42 4.4e+02 1.6 0.7 8 23 149 164 148 164 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 2 33 1.1e-06 0.0012 19.2 5.2 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 3 33 0.22 2.3e+02 2.5 0.0 7 21 231 245 227 246 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 4 33 0.027 29 5.4 0.4 5 23 254 275 253 275 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 5 33 9.7e-08 0.0001 22.5 0.4 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 6 33 2e-06 0.0021 18.4 1.6 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 7 33 7.2e-08 7.5e-05 23.0 0.1 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 8 33 3.8e-08 4e-05 23.8 1.9 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 9 33 1.5e-06 0.0016 18.8 0.1 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 10 33 1.9e-07 0.0002 21.6 0.2 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 11 33 4e-07 0.00042 20.6 0.1 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 12 33 8.3e-06 0.0087 16.5 5.6 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 13 33 2.9e-07 0.0003 21.1 0.2 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 14 33 1.9e-06 0.002 18.5 0.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 15 33 5.9e-09 6.2e-06 26.4 0.5 1 23 561 583 561 583 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 16 33 5.3e-06 0.0056 17.1 1.2 1 23 589 611 589 611 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 17 33 0.0001 0.11 13.0 0.6 1 23 617 639 617 639 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 18 33 4.1e-07 0.00044 20.6 0.5 1 23 645 667 645 667 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 19 33 1.4e-08 1.5e-05 25.2 0.7 1 23 673 695 673 695 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 20 33 4e-07 0.00042 20.6 2.0 1 23 701 723 701 723 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 21 33 8.3e-06 0.0088 16.5 0.4 5 23 733 751 731 751 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 22 33 8.9e-08 9.4e-05 22.7 1.7 1 23 757 779 757 779 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 23 33 1.7e-06 0.0018 18.7 1.4 1 20 785 804 785 807 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 24 33 1.6e-05 0.016 15.6 1.0 1 20 813 832 813 835 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 25 33 6.8e-09 7.1e-06 26.2 0.9 1 23 841 863 841 863 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 26 33 5.5e-06 0.0058 17.0 1.5 1 23 869 891 869 891 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 27 33 1.1e-08 1.2e-05 25.5 1.4 1 23 897 919 897 919 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 28 33 3.1e-07 0.00033 21.0 3.6 1 23 925 947 925 947 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 29 33 3.9e-08 4.2e-05 23.8 3.7 1 23 953 975 953 975 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 30 33 1e-06 0.0011 19.4 2.0 1 23 981 1003 981 1003 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 31 33 1.3e-05 0.014 15.8 2.0 1 23 1009 1031 1009 1031 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 32 33 1.7e-07 0.00018 21.8 0.2 1 23 1037 1059 1037 1059 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-202 - 1090 8.6e-146 466.9 250.9 33 33 8.4e-09 8.9e-06 25.9 1.1 1 23 1065 1087 1065 1087 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 1 32 0.0037 3.9 8.6 4.4 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 2 32 5.3 5.6e+03 -1.2 0.1 7 21 231 245 225 247 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 3 32 2.4 2.5e+03 -0.2 0.4 10 23 262 275 253 276 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 4 32 6.9e-06 0.0073 17.1 0.4 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 5 32 5.9e-05 0.063 14.2 1.2 1 23 309 331 309 332 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 6 32 1.6e-05 0.017 15.9 0.2 3 23 339 359 337 360 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 7 32 0.0001 0.11 13.4 1.3 3 23 367 387 365 388 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 8 32 0.00066 0.69 10.9 0.2 3 23 395 415 393 416 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 9 32 0.00039 0.41 11.6 0.2 3 23 423 443 421 444 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 10 32 1.8e-05 0.019 15.7 0.2 3 23 451 471 449 472 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 11 32 0.0031 3.3 8.8 4.2 1 23 477 499 477 500 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 12 32 5e-06 0.0052 17.5 0.2 1 23 505 527 505 528 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 13 32 0.00022 0.23 12.4 0.9 1 23 533 555 533 556 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 14 32 6.8e-06 0.0071 17.1 0.4 3 23 563 583 561 584 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 15 32 0.00014 0.15 13.0 1.1 1 23 589 611 589 612 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 16 32 0.0071 7.4 7.7 0.4 3 23 619 639 617 640 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 17 32 2.3e-05 0.024 15.4 0.7 1 23 645 667 645 668 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 18 32 2.3e-05 0.025 15.4 0.4 1 23 673 695 673 696 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 19 32 2.3e-05 0.024 15.4 2.0 1 23 701 723 701 724 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 20 32 0.001 1.1 10.3 0.3 5 23 733 751 731 752 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 21 32 3.4e-05 0.036 14.9 1.2 3 23 759 779 757 780 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 22 32 0.00016 0.17 12.8 1.2 3 21 787 805 785 808 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 23 32 0.00039 0.41 11.6 1.1 1 21 813 833 813 836 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 24 32 8.3e-06 0.0087 16.8 0.7 1 23 841 863 841 864 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 25 32 0.00035 0.37 11.7 1.1 1 23 869 891 869 892 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 26 32 0.00017 0.18 12.8 0.8 3 23 899 919 897 920 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 27 32 0.0012 1.2 10.1 2.7 1 23 925 947 925 948 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 28 32 0.0011 1.2 10.2 2.4 1 23 953 975 953 976 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 29 32 1.4e-06 0.0015 19.2 1.8 1 23 981 1003 981 1004 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 30 32 3.2e-05 0.034 15.0 1.9 3 23 1011 1031 1009 1032 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 31 32 2.2e-05 0.024 15.5 0.4 1 23 1037 1059 1037 1060 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-202 - 1090 1.1e-78 252.9 233.7 32 32 4.9e-05 0.052 14.4 0.5 1 23 1065 1087 1065 1088 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 1 32 0.0026 2.7 8.1 2.9 2 14 197 209 196 220 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 2 32 4.2 4.4e+03 -2.1 0.1 18 26 237 245 237 245 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 3 32 2.7 2.8e+03 -1.5 0.0 20 26 267 273 266 274 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 4 32 3.7e-06 0.0039 17.1 1.7 2 20 281 299 281 303 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 5 32 0.0028 3 8.0 0.5 2 12 309 319 309 328 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 6 32 4.5e-07 0.00048 20.1 0.2 2 24 337 359 337 362 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 7 32 0.0012 1.2 9.2 0.9 2 21 365 384 365 389 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 8 32 0.00066 0.69 10.0 0.4 2 21 393 412 393 417 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 9 32 0.00063 0.67 10.0 0.3 2 21 421 440 421 445 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 10 32 3.2e-06 0.0034 17.4 0.5 2 24 449 471 449 474 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 11 32 0.0041 4.3 7.4 4.6 2 11 477 486 477 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 12 32 5.8e-07 0.00061 19.7 0.7 2 24 505 527 505 530 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 13 32 0.0012 1.2 9.2 1.5 2 21 533 552 533 557 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 14 32 7.7e-06 0.0081 16.1 0.4 2 24 561 583 561 586 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 15 32 0.0031 3.3 7.8 0.9 2 12 589 599 589 602 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 16 32 0.014 14 5.8 0.5 2 12 617 627 617 627 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 17 32 0.00017 0.18 11.8 1.2 2 22 645 665 645 669 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 18 32 0.0056 5.9 7.0 0.2 2 24 673 695 673 698 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 19 32 0.00045 0.47 10.5 2.6 2 24 701 723 701 726 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 20 32 0.049 51 4.0 0.1 5 13 732 740 732 750 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 21 32 0.00037 0.39 10.8 0.6 2 13 757 768 757 778 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 22 32 0.00031 0.33 11.0 0.8 2 13 785 796 784 804 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 23 32 0.00081 0.86 9.7 0.6 2 21 813 832 813 835 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 24 32 4.9e-05 0.052 13.6 0.7 2 22 841 861 840 865 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 25 32 0.0023 2.5 8.2 0.4 2 11 869 878 869 891 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 26 32 0.0041 4.3 7.4 0.4 2 13 897 908 897 920 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 27 32 0.00021 0.22 11.6 2.8 2 21 925 944 925 949 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 28 32 0.00023 0.24 11.4 0.6 2 12 953 963 953 975 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 29 32 5.3e-06 0.0056 16.6 2.7 2 24 981 1003 981 1006 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 30 32 0.018 19 5.4 1.2 2 12 1009 1019 1009 1031 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 31 32 0.0091 9.6 6.3 0.2 2 11 1037 1046 1036 1055 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-202 - 1090 9.8e-54 178.5 227.9 32 32 8.7e-05 0.092 12.8 1.2 2 22 1065 1085 1065 1087 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 1 23 0.001 1.1 9.4 1.9 6 31 197 229 196 233 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 2 23 4.2e-05 0.044 13.9 5.0 6 34 281 316 280 319 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 3 23 3.6e-06 0.0038 17.3 1.9 6 34 309 344 308 348 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 4 23 8.5e-06 0.0089 16.1 2.4 6 34 365 400 363 406 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 5 23 7.1e-06 0.0075 16.4 1.7 6 34 421 456 420 461 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 6 23 0.00013 0.14 12.3 5.6 6 34 477 512 475 516 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 7 23 2.6e-05 0.028 14.5 2.6 6 34 533 568 532 574 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 8 23 0.0089 9.4 6.4 0.3 6 18 561 573 560 586 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 9 23 1.2e-06 0.0012 18.9 1.1 6 36 589 626 588 630 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 10 23 2.3e-06 0.0025 17.9 2.2 6 38 645 684 644 686 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 11 23 0.033 35 4.6 4.7 6 33 701 735 700 739 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 12 23 0.0013 1.4 9.1 1.3 6 34 729 764 728 769 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 13 23 0.00016 0.17 12.1 4.2 6 34 757 792 755 798 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 14 23 8.8e-05 0.093 12.9 3.7 6 34 785 820 783 827 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 15 23 0.00012 0.13 12.4 3.9 6 34 813 848 812 853 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 16 23 1.4e-05 0.015 15.4 3.8 6 34 841 876 839 881 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 17 23 2.4e-06 0.0026 17.8 2.7 6 39 869 909 868 910 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 18 23 2.4e-05 0.026 14.7 3.4 6 38 925 964 924 966 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 19 23 0.00029 0.31 11.2 5.3 6 34 953 988 952 991 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 20 23 0.00022 0.24 11.6 7.6 6 35 981 1017 980 1019 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 21 23 0.00017 0.18 11.9 5.9 6 34 1009 1044 1008 1047 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 22 23 9.5e-05 0.1 12.8 3.6 6 38 1037 1076 1035 1078 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-202 - 1090 1.5e-39 133.8 164.8 23 23 0.0055 5.8 7.1 0.3 6 19 1065 1078 1064 1086 0.84 Zinc ribbon domain zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 1 28 3.6e-05 0.038 14.4 1.0 1 22 281 302 281 304 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 2 28 0.98 1e+03 0.3 0.6 1 21 309 329 309 332 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 3 28 0.0019 2 8.9 0.1 1 21 337 357 337 360 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 4 28 0.001 1.1 9.8 0.6 1 21 365 385 365 388 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 5 28 0.013 14 6.3 0.1 1 20 393 412 393 416 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 6 28 0.0035 3.7 8.1 0.2 1 21 421 441 421 444 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 7 28 0.0005 0.52 10.8 0.2 1 21 449 469 449 472 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 8 28 0.0078 8.2 7.0 2.2 1 21 477 497 477 500 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 9 28 0.00055 0.58 10.6 0.4 1 21 505 525 505 528 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 10 28 0.0044 4.6 7.8 0.2 1 19 533 551 533 555 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 11 28 6.5e-06 0.0069 16.7 0.4 1 21 561 581 561 584 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 12 28 0.026 28 5.3 1.0 1 21 589 609 589 612 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 13 28 2.1 2.2e+03 -0.7 0.1 1 19 645 663 645 663 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 14 28 0.06 63 4.2 0.1 1 20 673 692 673 696 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 15 28 0.14 1.5e+02 3.0 1.1 1 20 701 720 701 721 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 16 28 0.0011 1.2 9.7 0.8 6 22 734 750 732 752 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 17 28 2.3e-05 0.025 15.0 1.6 1 22 757 778 757 780 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 18 28 8.3e-05 0.088 13.2 0.9 1 19 785 803 785 804 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 19 28 0.0072 7.6 7.1 0.3 1 19 813 831 813 832 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 20 28 2.5e-05 0.027 14.9 0.6 1 21 841 861 841 864 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 21 28 0.0032 3.3 8.2 0.5 1 20 869 888 869 892 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 22 28 0.88 9.3e+02 0.4 0.2 1 21 897 917 897 920 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 23 28 1.1 1.2e+03 0.1 0.0 8 23 917 932 916 933 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 24 28 0.017 18 5.9 0.6 1 21 953 973 953 976 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 25 28 0.015 16 6.1 1.1 1 21 981 1001 981 1004 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 26 28 0.0019 2 8.9 1.0 1 21 1009 1029 1009 1032 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 27 28 4.8 5.1e+03 -1.9 0.1 1 19 1037 1055 1037 1057 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-202 - 1090 9.4e-24 83.0 182.8 28 28 0.057 60 4.2 0.4 1 21 1065 1085 1065 1087 0.89 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 1 30 0.44 4.7e+02 1.3 2.5 2 21 197 216 196 217 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 2 30 0.00028 0.3 11.4 0.1 2 21 281 300 280 301 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 3 30 2 2.1e+03 -0.8 0.1 4 11 311 318 308 328 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 4 30 0.00097 1 9.7 0.0 2 22 337 357 336 357 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 5 30 0.03 31 5.0 0.2 2 21 365 384 364 385 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 6 30 0.31 3.3e+02 1.7 0.2 2 11 393 402 392 403 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 7 30 0.056 59 4.1 0.0 2 21 421 440 420 441 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 8 30 0.00021 0.23 11.8 0.0 2 22 449 469 448 469 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 9 30 1.3 1.4e+03 -0.3 0.7 4 11 479 486 476 496 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 10 30 8.1e-05 0.086 13.2 0.0 2 22 505 525 504 525 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 11 30 0.88 9.2e+02 0.3 0.3 4 11 535 542 532 543 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 12 30 0.00014 0.14 12.4 0.0 2 22 561 581 560 581 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 13 30 0.27 2.9e+02 1.9 0.1 4 20 591 607 588 609 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 14 30 0.52 5.5e+02 1.0 0.1 2 11 617 626 616 636 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 15 30 0.054 57 4.2 0.0 4 20 647 663 644 663 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 16 30 0.4 4.2e+02 1.4 0.1 2 21 673 692 672 693 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 17 30 0.11 1.2e+02 3.2 0.2 2 11 701 710 700 711 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 18 30 0.013 14 6.1 0.2 6 21 733 748 732 749 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 19 30 8.5e-05 0.089 13.1 0.4 2 21 757 776 756 777 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 20 30 0.0002 0.21 11.9 0.5 2 21 785 804 784 804 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 21 30 0.21 2.2e+02 2.3 0.1 4 20 815 831 812 832 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 22 30 0.00036 0.38 11.1 0.1 2 22 841 861 840 861 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 23 30 0.38 4.1e+02 1.4 0.2 4 12 871 879 868 889 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 24 30 0.0049 5.2 7.5 0.1 2 22 897 917 896 917 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 25 30 1.5 1.6e+03 -0.4 0.2 2 11 925 934 924 936 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 26 30 0.033 35 4.8 0.1 2 20 953 971 952 973 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 27 30 0.057 60 4.1 0.5 2 22 981 1001 980 1003 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 28 30 0.027 29 5.1 0.3 2 22 1009 1029 1008 1029 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 29 30 3.7 3.9e+03 -1.7 0.1 4 11 1039 1046 1037 1055 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-202 - 1090 3.5e-23 81.3 129.9 30 30 0.0043 4.6 7.7 0.1 2 22 1065 1085 1064 1085 0.90 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF850-202 - 1090 1.5e-22 79.0 0.7 1 1 2.4e-25 2.5e-22 78.2 0.7 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 1 30 0.41 4.4e+02 0.8 1.4 5 26 197 218 196 219 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 2 30 3.7e-05 0.04 13.7 0.1 6 26 282 302 280 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 3 30 0.0014 1.4 8.7 1.0 6 26 310 330 307 331 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 4 30 5.9e-05 0.062 13.1 0.2 7 26 339 358 336 359 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 5 30 0.00027 0.29 10.9 0.5 7 26 367 386 364 387 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 6 30 0.21 2.2e+02 1.7 0.1 7 16 395 404 392 414 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 7 30 0.015 16 5.3 0.1 7 26 423 442 420 443 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 8 30 0.00097 1 9.2 0.1 7 26 451 470 448 471 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 9 30 0.044 47 3.9 2.3 7 26 479 498 476 499 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 10 30 0.00069 0.73 9.6 0.2 6 26 506 526 503 527 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 11 30 0.15 1.6e+02 2.1 0.2 6 15 534 543 531 551 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 12 30 0.00019 0.2 11.4 0.3 7 26 563 582 560 583 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 13 30 0.016 17 5.3 0.5 6 26 590 610 587 611 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 14 30 0.17 1.8e+02 2.0 0.2 7 26 619 638 616 639 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 15 30 0.0002 0.21 11.4 0.2 5 26 645 666 642 667 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 16 30 0.027 29 4.5 0.1 6 26 674 694 671 695 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 17 30 0.31 3.3e+02 1.2 1.0 6 16 702 712 699 721 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 18 30 0.0063 6.7 6.6 0.4 9 26 733 750 732 751 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 19 30 0.0002 0.22 11.3 0.4 7 26 759 778 756 779 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 20 30 0.0014 1.4 8.7 0.3 7 23 787 803 785 805 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 21 30 0.012 13 5.7 0.4 6 24 814 832 811 835 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 22 30 0.0019 2 8.2 1.2 7 26 843 862 840 863 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 23 30 0.05 53 3.7 0.8 6 26 870 890 867 891 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 24 30 0.77 8.1e+02 -0.1 0.5 7 26 899 918 897 919 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 25 30 0.1 1.1e+02 2.7 0.4 5 23 925 943 922 947 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 26 30 3.8 4e+03 -2.3 0.5 7 14 955 962 953 974 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 27 30 0.016 17 5.3 0.5 6 24 982 1000 980 1002 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 28 30 0.06 63 3.4 0.5 7 26 1011 1030 1008 1031 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 29 30 0.00032 0.34 10.7 0.2 3 23 1035 1055 1034 1059 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-202 - 1090 2.4e-19 68.8 178.0 30 30 0.13 1.4e+02 2.4 0.2 6 26 1066 1086 1063 1087 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 1 30 0.019 20 4.9 0.1 3 13 197 207 195 212 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 2 30 0.0042 4.5 7.0 0.2 3 21 281 300 279 300 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 3 30 0.032 33 4.2 0.1 3 14 309 320 307 328 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 4 30 0.0073 7.8 6.2 0.1 3 15 337 349 335 356 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 5 30 0.0088 9.3 5.9 0.2 3 15 365 377 363 384 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 6 30 0.03 32 4.2 0.3 3 12 393 402 391 405 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 7 30 0.01 11 5.7 0.1 3 15 421 433 419 440 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 8 30 0.0015 1.6 8.4 0.1 3 21 449 468 447 468 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 9 30 0.08 85 2.9 0.8 3 13 477 487 475 496 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 10 30 0.0014 1.5 8.5 0.0 3 21 505 524 503 524 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 11 30 0.053 56 3.5 0.3 3 12 533 542 531 545 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 12 30 0.0044 4.6 6.9 0.1 3 21 561 580 559 580 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 13 30 0.0074 7.9 6.2 0.1 3 21 589 608 587 608 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 14 30 0.024 25 4.6 0.1 3 20 617 635 615 636 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 15 30 0.01 11 5.7 0.1 3 14 645 656 643 664 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 16 30 0.023 24 4.6 0.1 3 12 673 682 671 691 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 17 30 0.056 59 3.4 1.1 3 12 701 710 699 715 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 18 30 0.56 5.9e+02 0.2 0.1 7 21 733 748 732 748 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 19 30 0.0019 2 8.1 0.4 3 21 757 776 755 776 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 20 30 0.0015 1.6 8.4 0.3 3 21 785 804 783 805 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 21 30 0.02 21 4.8 0.1 3 15 813 825 811 832 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 22 30 0.00067 0.7 9.5 0.2 2 21 840 860 839 860 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 23 30 0.023 24 4.6 0.2 3 13 869 879 867 888 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 24 30 0.015 16 5.2 0.2 3 21 897 916 895 916 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 25 30 0.17 1.8e+02 1.8 0.1 3 12 925 934 923 940 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 26 30 0.096 1e+02 2.6 0.2 3 12 953 962 951 969 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 27 30 0.018 19 5.0 0.8 3 16 981 995 979 1000 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 28 30 0.012 13 5.5 0.9 3 20 1009 1027 1007 1028 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 29 30 0.0038 4 7.1 0.3 2 11 1036 1045 1035 1047 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-202 - 1090 6.8e-19 67.2 145.7 30 30 0.045 47 3.7 0.1 3 20 1065 1083 1063 1084 0.81 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 1 27 0.64 6.7e+02 0.3 0.8 8 36 121 152 121 154 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 2 27 0.058 61 3.6 0.2 3 15 195 207 194 211 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 3 27 0.0031 3.3 7.7 0.1 2 15 278 291 277 293 0.94 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 4 27 0.016 17 5.4 0.1 3 15 307 319 305 321 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 5 27 0.065 69 3.5 0.2 3 14 335 346 333 347 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 6 27 0.001 1.1 9.2 0.2 3 17 363 377 361 379 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 7 27 0.00092 0.98 9.4 0.1 3 18 391 406 389 407 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 8 27 0.031 33 4.5 0.1 3 15 419 431 417 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 9 27 0.065 69 3.5 0.2 3 14 447 458 445 459 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 10 27 0.00027 0.29 11.1 0.5 3 17 475 489 473 495 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 11 27 0.023 25 4.9 0.1 3 14 503 514 501 515 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 12 27 0.00053 0.56 10.1 0.1 3 18 531 546 529 547 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 13 27 0.033 35 4.4 0.1 3 15 559 571 557 573 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 14 27 0.017 18 5.3 0.1 3 15 587 599 585 602 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 15 27 0.11 1.2e+02 2.7 0.1 3 14 615 626 613 628 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 16 27 0.0076 8 6.4 2.6 3 46 643 685 641 686 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 17 27 0.00044 0.47 10.4 1.6 3 27 699 727 697 739 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 18 27 0.03 32 4.5 0.1 3 15 755 767 753 771 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 19 27 0.09 95 3.0 0.2 4 15 784 795 781 797 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 20 27 0.014 15 5.6 0.1 3 15 811 823 809 827 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 21 27 0.036 38 4.3 0.2 3 15 839 851 838 853 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 22 27 0.0019 2 8.4 0.1 3 17 867 881 865 884 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 23 27 0.12 1.2e+02 2.7 0.2 3 14 895 906 893 909 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 24 27 0.03 32 4.5 3.1 3 44 923 963 921 966 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 25 27 0.014 14 5.6 0.6 2 15 978 991 977 993 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 26 27 0.12 1.3e+02 2.6 0.2 3 14 1007 1018 1005 1019 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-202 - 1090 2.1e-18 65.9 146.0 27 27 0.014 15 5.6 3.3 3 45 1035 1076 1033 1078 0.80 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 1 30 0.0015 1.6 8.8 0.2 3 19 198 215 197 216 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 2 30 0.017 18 5.5 0.1 3 12 282 291 280 296 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 3 30 0.09 95 3.2 0.0 3 12 310 319 308 326 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 4 30 0.015 16 5.6 0.1 3 12 338 347 336 354 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 5 30 0.031 33 4.6 0.2 3 12 366 375 364 380 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 6 30 0.039 41 4.3 0.4 3 11 394 402 392 404 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 7 30 0.02 21 5.3 0.1 3 12 422 431 420 439 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 8 30 0.01 11 6.2 0.1 3 13 450 460 448 467 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 9 30 0.39 4.1e+02 1.1 2.3 4 11 479 486 477 487 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 10 30 0.0062 6.5 6.9 0.1 3 13 506 516 504 523 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 11 30 0.031 32 4.7 0.3 3 11 534 542 532 544 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 12 30 0.019 20 5.4 0.1 3 12 562 571 560 579 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 13 30 0.013 14 5.9 0.1 3 12 590 599 588 607 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 14 30 0.032 34 4.6 0.2 3 11 618 626 616 628 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 15 30 0.021 22 5.2 0.1 3 11 646 654 644 658 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 16 30 0.12 1.3e+02 2.8 0.0 3 13 674 684 672 691 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 17 30 0.033 35 4.6 0.5 3 11 702 710 700 712 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 18 30 2.2 2.3e+03 -1.3 0.0 6 12 733 739 732 746 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 19 30 0.018 19 5.4 0.1 3 12 758 767 756 775 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 20 30 0.022 23 5.1 0.1 3 12 786 795 785 803 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 21 30 0.018 19 5.4 0.1 3 12 814 823 812 831 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 22 30 0.027 28 4.8 0.1 4 12 843 851 840 859 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 23 30 0.024 25 5.0 0.3 3 12 870 879 868 880 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 24 30 0.017 18 5.5 0.1 3 12 898 907 896 915 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 25 30 0.056 59 3.8 0.1 3 11 926 934 924 936 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 26 30 0.29 3.1e+02 1.5 0.2 3 12 954 963 952 964 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 27 30 0.041 44 4.2 1.0 3 12 982 991 980 997 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 28 30 0.027 29 4.8 0.7 3 11 1010 1018 1008 1027 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 29 30 0.25 2.6e+02 1.8 0.1 3 11 1038 1046 1037 1049 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-202 - 1090 1.4e-14 53.8 135.7 30 30 0.16 1.7e+02 2.4 0.3 3 12 1066 1075 1064 1076 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 1 16 7.4 7.8e+03 -2.3 0.0 35 51 101 117 94 155 0.72 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 2 16 0.076 80 4.1 1.2 34 76 166 207 139 212 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 3 16 7.3e-05 0.077 13.8 1.5 25 75 268 318 250 324 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 4 16 0.032 34 5.3 3.7 36 76 335 375 323 403 0.64 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 5 16 0.029 30 5.4 0.3 26 76 381 431 375 436 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 6 16 0.07 74 4.2 5.4 26 74 437 485 413 492 0.64 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 7 16 0.0038 4 8.3 1.1 33 76 500 543 495 547 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 8 16 0.0048 5.1 7.9 1.4 35 75 558 598 549 604 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 9 16 0.0047 5 8.0 1.0 31 74 610 653 603 658 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 10 16 0.0059 6.3 7.6 2.1 32 75 667 710 662 715 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 11 16 0.051 54 4.6 0.7 40 77 731 768 716 772 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 12 16 0.0009 0.95 10.3 1.1 26 75 773 822 767 828 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 13 16 0.0014 1.5 9.6 1.5 30 75 833 878 823 884 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 14 16 0.0007 0.74 10.6 1.2 26 74 885 933 879 937 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 15 16 0.013 14 6.5 2.1 33 76 948 991 942 996 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-202 - 1090 2.2e-08 34.7 128.8 16 16 0.32 3.3e+02 2.1 7.2 37 74 1008 1045 996 1081 0.69 zinc-ribbon family DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 1 23 1.2 1.3e+03 -0.6 0.1 10 24 190 204 183 210 0.79 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 2 23 6.9 7.2e+03 -3.0 0.0 10 22 274 286 272 286 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 3 23 1.4 1.4e+03 -0.7 0.0 8 22 300 314 298 315 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 4 23 1.4 1.5e+03 -0.8 0.0 8 22 328 342 323 343 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 5 23 1.9 2e+03 -1.2 0.0 8 22 356 370 352 371 0.88 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 6 23 1.9 2e+03 -1.2 0.0 8 22 384 398 380 399 0.88 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 7 23 1.2 1.3e+03 -0.5 0.0 6 22 438 454 435 455 0.86 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 8 23 0.92 9.7e+02 -0.2 0.0 7 22 467 482 464 483 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 9 23 0.74 7.8e+02 0.1 0.0 8 22 496 510 494 511 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 10 23 0.21 2.2e+02 1.9 0.0 7 22 523 538 519 539 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 11 23 0.18 1.8e+02 2.1 0.0 6 22 578 594 573 595 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 12 23 0.47 5e+02 0.7 0.0 6 25 606 625 603 628 0.81 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 13 23 0.96 1e+03 -0.2 0.0 8 22 636 650 632 654 0.85 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 14 23 2.3 2.4e+03 -1.4 0.0 9 22 693 706 690 707 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 15 23 4 4.2e+03 -2.2 0.0 10 22 722 734 717 734 0.85 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 16 23 1 1.1e+03 -0.3 0.0 6 22 746 762 743 763 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 17 23 0.53 5.6e+02 0.6 0.0 6 22 774 790 771 791 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 18 23 0.52 5.5e+02 0.6 0.0 10 22 806 818 799 819 0.86 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 19 23 0.073 77 3.4 0.0 4 22 856 874 853 875 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 20 23 1.1 1.1e+03 -0.4 0.0 8 23 888 903 883 907 0.83 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 21 23 0.96 1e+03 -0.2 0.0 3 22 911 930 909 934 0.85 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 22 23 1.3 1.3e+03 -0.6 0.0 8 23 1000 1015 995 1020 0.82 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-202 - 1090 2e-06 27.6 21.4 23 23 0.65 6.8e+02 0.3 0.0 4 22 1024 1042 1022 1046 0.87 Protein of unknown function (DUF3741) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 1 34 0.0051 4.5 7.9 0.5 2 20 125 143 124 147 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 2 34 2.3e-06 0.002 18.5 3.6 8 26 158 176 156 176 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 3 34 7.1e-07 0.00064 20.0 0.3 2 24 180 202 179 204 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 4 34 0.46 4.1e+02 1.7 0.3 2 18 208 224 207 230 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 5 34 9.6e-10 8.6e-07 29.1 0.6 1 26 235 260 235 260 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 6 34 3.8e-10 3.4e-07 30.4 1.5 2 25 264 287 263 287 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 7 34 3.6e-10 3.3e-07 30.4 0.2 2 26 292 316 291 316 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 8 34 3.8e-11 3.4e-08 33.5 0.3 1 25 319 343 319 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 9 34 3.8e-11 3.4e-08 33.5 0.3 1 25 347 371 347 371 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 10 34 4.4e-09 4e-06 27.0 0.1 5 25 379 399 375 400 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 11 34 2.8e-10 2.5e-07 30.8 0.2 3 26 405 428 404 428 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 12 34 3.5e-11 3.2e-08 33.7 1.5 1 25 431 455 431 455 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 13 34 1.7e-11 1.5e-08 34.7 1.1 3 26 461 484 460 484 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 14 34 1e-10 9e-08 32.2 1.3 1 25 487 511 487 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 15 34 1.3e-09 1.2e-06 28.7 0.1 5 26 519 540 515 540 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 16 34 7.8e-11 7e-08 32.6 1.0 1 25 543 567 543 567 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 17 34 6.7e-09 6e-06 26.4 0.3 4 24 574 594 572 595 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 18 34 6e-11 5.4e-08 32.9 0.1 2 26 600 624 599 624 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 19 34 1.5e-11 1.3e-08 34.8 0.6 1 25 627 651 627 652 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 20 34 8e-12 7.2e-09 35.7 1.3 2 25 656 679 655 679 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 21 34 9.8e-05 0.088 13.3 0.0 2 26 684 708 683 708 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 22 34 1.6e-09 1.5e-06 28.4 0.3 3 26 713 736 712 736 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 23 34 2.7e-08 2.4e-05 24.6 0.1 3 26 741 764 740 764 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 24 34 7.3e-08 6.5e-05 23.2 2.0 5 25 771 791 768 791 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 25 34 6.7e-08 6e-05 23.3 0.5 2 26 796 820 795 820 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 26 34 4.2e-10 3.8e-07 30.3 1.4 4 25 826 847 824 847 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 27 34 1.4e-09 1.3e-06 28.6 0.5 4 25 854 875 852 876 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 28 34 7.7e-11 6.9e-08 32.6 1.6 2 26 880 904 879 904 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 29 34 1.2e-09 1.1e-06 28.8 2.2 1 25 907 931 907 932 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 30 34 6.1e-10 5.5e-07 29.7 2.9 1 25 935 959 935 960 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 31 34 1.7e-10 1.5e-07 31.5 2.1 2 25 964 987 963 988 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 32 34 6.4e-11 5.8e-08 32.8 0.9 2 24 992 1014 991 1016 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 33 34 1.3e-12 1.2e-09 38.2 0.6 1 26 1019 1044 1019 1044 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF850-203 - 1058 5.2e-241 769.6 232.9 34 34 1.4 1.3e+03 0.1 0.3 2 9 1048 1055 1047 1056 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 1 33 0.48 4.3e+02 1.7 0.7 8 23 117 132 116 132 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 2 33 1.2e-06 0.0011 19.3 5.2 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 3 33 0.25 2.3e+02 2.6 0.0 7 21 199 213 195 214 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 4 33 0.031 28 5.4 0.4 5 23 222 243 221 243 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 5 33 1.1e-07 9.9e-05 22.6 0.4 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 6 33 2.3e-06 0.0021 18.4 1.6 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 7 33 8.1e-08 7.3e-05 23.0 0.1 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 8 33 4.3e-08 3.9e-05 23.9 1.9 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 9 33 1.7e-06 0.0015 18.8 0.1 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 10 33 2.2e-07 0.00019 21.7 0.2 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 11 33 4.5e-07 0.0004 20.7 0.1 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 12 33 9.4e-06 0.0084 16.5 5.6 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 13 33 3.2e-07 0.00029 21.1 0.2 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 14 33 2.2e-06 0.002 18.5 0.8 1 23 501 523 501 523 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 15 33 6.7e-09 6e-06 26.4 0.5 1 23 529 551 529 551 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 16 33 6e-06 0.0054 17.1 1.2 1 23 557 579 557 579 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 17 33 0.00011 0.1 13.1 0.6 1 23 585 607 585 607 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 18 33 4.7e-07 0.00042 20.6 0.5 1 23 613 635 613 635 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 19 33 1.6e-08 1.4e-05 25.3 0.7 1 23 641 663 641 663 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 20 33 4.6e-07 0.00041 20.7 2.0 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 21 33 9.5e-06 0.0085 16.5 0.4 5 23 701 719 699 719 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 22 33 1e-07 9.1e-05 22.7 1.7 1 23 725 747 725 747 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 23 33 1.9e-06 0.0017 18.7 1.4 1 20 753 772 753 775 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 24 33 1.8e-05 0.016 15.6 1.0 1 20 781 800 781 803 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 25 33 7.7e-09 6.9e-06 26.2 0.9 1 23 809 831 809 831 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 26 33 6.2e-06 0.0056 17.1 1.5 1 23 837 859 837 859 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 27 33 1.3e-08 1.2e-05 25.5 1.4 1 23 865 887 865 887 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 28 33 3.5e-07 0.00032 21.0 3.6 1 23 893 915 893 915 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 29 33 4.5e-08 4e-05 23.8 3.7 1 23 921 943 921 943 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 30 33 1.1e-06 0.001 19.4 2.0 1 23 949 971 949 971 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 31 33 1.5e-05 0.013 15.9 2.0 1 23 977 999 977 999 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 32 33 1.9e-07 0.00017 21.8 0.2 1 23 1005 1027 1005 1027 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF850-203 - 1058 2.9e-146 468.4 250.9 33 33 9.6e-09 8.6e-06 25.9 1.1 1 23 1033 1055 1033 1055 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 1 32 0.0043 3.8 8.6 4.4 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 2 32 6 5.4e+03 -1.2 0.1 7 21 199 213 193 215 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 3 32 2.7 2.4e+03 -0.1 0.4 10 23 230 243 221 244 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 4 32 7.8e-06 0.007 17.1 0.4 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 5 32 6.8e-05 0.061 14.2 1.2 1 23 277 299 277 300 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 6 32 1.9e-05 0.017 15.9 0.2 3 23 307 327 305 328 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 7 32 0.00012 0.1 13.5 1.3 3 23 335 355 333 356 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 8 32 0.00075 0.67 11.0 0.2 3 23 363 383 361 384 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 9 32 0.00044 0.39 11.7 0.2 3 23 391 411 389 412 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 10 32 2.1e-05 0.019 15.8 0.2 3 23 419 439 417 440 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 11 32 0.0035 3.2 8.8 4.2 1 23 445 467 445 468 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 12 32 5.7e-06 0.0051 17.6 0.2 1 23 473 495 473 496 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 13 32 0.00025 0.22 12.5 0.9 1 23 501 523 501 524 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 14 32 7.7e-06 0.0069 17.1 0.4 3 23 531 551 529 552 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 15 32 0.00016 0.15 13.0 1.1 1 23 557 579 557 580 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 16 32 0.008 7.2 7.7 0.4 3 23 587 607 585 608 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 17 32 2.6e-05 0.023 15.5 0.7 1 23 613 635 613 636 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 18 32 2.7e-05 0.024 15.5 0.4 1 23 641 663 641 664 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 19 32 2.6e-05 0.023 15.5 2.0 1 23 669 691 669 692 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 20 32 0.0012 1 10.3 0.3 5 23 701 719 699 720 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 21 32 3.9e-05 0.035 14.9 1.2 3 23 727 747 725 748 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 22 32 0.00018 0.17 12.8 1.2 3 21 755 773 753 776 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 23 32 0.00044 0.39 11.7 1.1 1 21 781 801 781 804 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 24 32 9.4e-06 0.0084 16.9 0.7 1 23 809 831 809 832 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 25 32 0.0004 0.36 11.8 1.1 1 23 837 859 837 860 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 26 32 0.00019 0.17 12.8 0.8 3 23 867 887 865 888 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 27 32 0.0013 1.2 10.2 2.8 1 23 893 915 893 916 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 28 32 0.0012 1.1 10.3 2.4 1 23 921 943 921 944 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 29 32 1.6e-06 0.0014 19.3 1.8 1 23 949 971 949 972 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 30 32 3.6e-05 0.033 15.0 1.9 3 23 979 999 977 1000 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 31 32 2.5e-05 0.023 15.5 0.4 1 23 1005 1027 1005 1028 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF850-203 - 1058 4e-79 254.4 233.7 32 32 5.6e-05 0.05 14.5 0.5 1 23 1033 1055 1033 1056 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 1 32 0.0029 2.6 8.1 2.9 2 14 165 177 164 188 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 2 32 4.7 4.3e+03 -2.1 0.1 18 26 205 213 205 213 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 3 32 3 2.7e+03 -1.5 0.0 20 26 235 241 234 242 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 4 32 4.3e-06 0.0038 17.2 1.7 2 20 249 267 249 271 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 5 32 0.0032 2.9 8.0 0.5 2 12 277 287 277 296 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 6 32 5.1e-07 0.00046 20.1 0.2 2 24 305 327 305 330 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 7 32 0.0013 1.2 9.2 0.9 2 21 333 352 333 357 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 8 32 0.00075 0.67 10.0 0.4 2 21 361 380 361 385 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 9 32 0.00072 0.64 10.1 0.3 2 21 389 408 389 413 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 10 32 3.6e-06 0.0033 17.4 0.5 2 24 417 439 417 442 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 11 32 0.0047 4.2 7.5 4.6 2 11 445 454 445 455 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 12 32 6.6e-07 0.00059 19.8 0.7 2 24 473 495 473 498 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 13 32 0.0013 1.2 9.2 1.5 2 21 501 520 501 525 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 14 32 8.8e-06 0.0079 16.2 0.4 2 24 529 551 529 554 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 15 32 0.0036 3.2 7.9 0.9 2 12 557 567 557 570 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 16 32 0.016 14 5.8 0.5 2 12 585 595 585 595 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 17 32 0.0002 0.18 11.9 1.2 2 22 613 633 613 637 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 18 32 0.0064 5.7 7.1 0.2 2 24 641 663 641 666 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 19 32 0.00051 0.46 10.6 2.6 2 24 669 691 669 694 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 20 32 0.055 50 4.1 0.1 5 13 700 708 700 718 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 21 32 0.00043 0.38 10.8 0.6 2 13 725 736 725 746 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 22 32 0.00036 0.32 11.0 0.8 2 13 753 764 752 772 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 23 32 0.00092 0.83 9.7 0.6 2 21 781 800 781 803 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 24 32 5.6e-05 0.05 13.6 0.7 2 22 809 829 808 833 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 25 32 0.0027 2.4 8.3 0.4 2 11 837 846 837 859 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 26 32 0.0047 4.2 7.5 0.4 2 13 865 876 865 888 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 27 32 0.00024 0.21 11.6 2.8 2 21 893 912 893 917 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 28 32 0.00026 0.24 11.5 0.6 2 12 921 931 921 943 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 29 32 6.1e-06 0.0054 16.7 2.7 2 24 949 971 949 974 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 30 32 0.02 18 5.5 1.2 2 12 977 987 977 999 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 31 32 0.01 9.3 6.4 0.2 2 11 1005 1014 1004 1023 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF850-203 - 1058 3.9e-54 179.8 227.9 32 32 9.9e-05 0.089 12.8 1.2 2 22 1033 1053 1033 1055 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 1 23 0.0012 1.1 9.5 1.9 6 31 165 197 164 201 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 2 23 4.7e-05 0.043 14.0 5.0 6 34 249 284 248 287 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 3 23 4e-06 0.0036 17.4 1.9 6 34 277 312 276 316 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 4 23 9.6e-06 0.0086 16.2 2.4 6 34 333 368 331 374 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 5 23 8e-06 0.0072 16.4 1.7 6 34 389 424 388 429 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 6 23 0.00015 0.13 12.4 5.6 6 34 445 480 443 484 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 7 23 3.6e-05 0.032 14.3 2.9 6 34 501 536 499 542 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 8 23 0.01 9.3 6.5 0.3 6 18 529 541 528 554 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 9 23 1.3e-06 0.0012 18.9 1.2 6 36 557 594 555 598 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 10 23 2.7e-06 0.0024 18.0 2.2 6 38 613 652 612 654 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 11 23 0.038 34 4.7 4.7 6 33 669 703 668 707 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 12 23 0.0017 1.5 9.0 1.5 6 34 697 732 696 737 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 13 23 0.00019 0.17 12.1 4.3 6 34 725 760 723 765 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 14 23 9.9e-05 0.088 12.9 3.7 6 34 753 788 751 795 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 15 23 0.00014 0.12 12.5 3.9 6 34 781 816 780 821 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 16 23 1.5e-05 0.013 15.6 3.7 6 34 809 844 807 849 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 17 23 2.7e-06 0.0024 17.9 2.6 6 39 837 877 836 878 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 18 23 2.7e-05 0.025 14.7 3.4 6 38 893 932 892 934 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 19 23 0.00032 0.29 11.3 5.2 6 34 921 956 920 959 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 20 23 0.00091 0.81 9.9 9.5 6 36 949 986 948 989 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 21 23 0.00019 0.17 12.0 5.8 6 34 977 1012 976 1015 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 22 23 0.00011 0.099 12.8 3.6 6 38 1005 1044 1003 1046 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF850-203 - 1058 8.7e-40 134.6 165.0 23 23 0.0067 6 7.1 0.3 6 19 1033 1046 1032 1053 0.85 Zinc ribbon domain zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 1 28 4.1e-05 0.037 14.4 1.0 1 22 249 270 249 272 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 2 28 1.1 1e+03 0.3 0.6 1 21 277 297 277 300 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 3 28 0.0021 1.9 9.0 0.1 1 21 305 325 305 328 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 4 28 0.0012 1.1 9.8 0.6 1 21 333 353 333 356 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 5 28 0.015 13 6.3 0.1 1 20 361 380 361 384 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 6 28 0.004 3.6 8.1 0.2 1 21 389 409 389 412 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 7 28 0.00057 0.51 10.8 0.2 1 21 417 437 417 440 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 8 28 0.0089 7.9 7.0 2.2 1 21 445 465 445 468 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 9 28 0.00063 0.57 10.7 0.4 1 21 473 493 473 496 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 10 28 0.005 4.4 7.8 0.2 1 19 501 519 501 523 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 11 28 7.4e-06 0.0067 16.8 0.4 1 21 529 549 529 552 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 12 28 0.03 27 5.3 1.0 1 21 557 577 557 580 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 13 28 2.4 2.1e+03 -0.7 0.1 1 19 613 631 613 631 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 14 28 0.068 61 4.2 0.1 1 20 641 660 641 664 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 15 28 0.16 1.4e+02 3.0 1.1 1 20 669 688 669 689 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 16 28 0.0013 1.1 9.7 0.8 6 22 702 718 700 720 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 17 28 2.7e-05 0.024 15.0 1.6 1 22 725 746 725 748 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 18 28 9.5e-05 0.085 13.3 0.9 1 19 753 771 753 772 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 19 28 0.0082 7.3 7.1 0.3 1 19 781 799 781 800 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 20 28 2.9e-05 0.026 14.9 0.6 1 21 809 829 809 832 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 21 28 0.0036 3.2 8.3 0.5 1 20 837 856 837 860 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 22 28 1 9e+02 0.5 0.2 1 21 865 885 865 888 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 23 28 1.3 1.1e+03 0.2 0.0 8 23 885 900 884 901 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 24 28 0.02 18 5.9 0.6 1 21 921 941 921 944 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 25 28 0.017 15 6.1 1.1 1 21 949 969 949 972 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 26 28 0.0022 1.9 9.0 1.0 1 21 977 997 977 1000 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 27 28 5.5 4.9e+03 -1.8 0.1 1 19 1005 1023 1005 1025 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF850-203 - 1058 3.9e-24 84.3 182.8 28 28 0.065 58 4.3 0.4 1 21 1033 1053 1033 1055 0.89 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 1 30 0.5 4.5e+02 1.3 2.5 2 21 165 184 164 185 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 2 30 0.00032 0.29 11.5 0.1 2 21 249 268 248 269 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 3 30 2.3 2e+03 -0.8 0.1 4 11 279 286 276 296 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 4 30 0.0011 0.99 9.8 0.0 2 22 305 325 304 325 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 5 30 0.034 30 5.0 0.2 2 21 333 352 332 353 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 6 30 0.36 3.2e+02 1.8 0.2 2 11 361 370 360 371 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 7 30 0.064 58 4.2 0.0 2 21 389 408 388 409 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 8 30 0.00024 0.22 11.9 0.0 2 22 417 437 416 437 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 9 30 1.5 1.4e+03 -0.2 0.7 4 11 447 454 444 464 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 10 30 9.2e-05 0.083 13.2 0.0 2 22 473 493 472 493 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 11 30 1 9e+02 0.4 0.3 4 11 503 510 500 511 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 12 30 0.00016 0.14 12.5 0.0 2 22 529 549 528 549 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 13 30 0.31 2.8e+02 2.0 0.1 4 20 559 575 556 577 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 14 30 0.59 5.3e+02 1.1 0.1 2 11 585 594 584 604 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 15 30 0.062 55 4.2 0.0 4 20 615 631 612 631 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 16 30 0.45 4e+02 1.5 0.1 2 21 641 660 640 661 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 17 30 0.13 1.1e+02 3.2 0.2 2 11 669 678 668 679 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 18 30 0.015 14 6.1 0.2 6 21 701 716 700 717 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 19 30 9.7e-05 0.087 13.1 0.4 2 21 725 744 724 745 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 20 30 0.00022 0.2 12.0 0.5 2 21 753 772 752 772 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 21 30 0.24 2.2e+02 2.3 0.1 4 20 783 799 780 800 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 22 30 0.00041 0.37 11.1 0.1 2 22 809 829 808 829 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 23 30 0.44 3.9e+02 1.5 0.2 4 12 839 847 836 857 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 24 30 0.0056 5 7.5 0.1 2 22 865 885 864 885 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 25 30 1.7 1.5e+03 -0.4 0.2 2 11 893 902 892 904 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 26 30 0.038 34 4.9 0.1 2 20 921 939 920 941 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 27 30 0.065 58 4.1 0.5 2 22 949 969 948 971 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 28 30 0.031 28 5.2 0.3 2 22 977 997 976 997 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 29 30 4.2 3.8e+03 -1.6 0.1 4 11 1007 1014 1005 1023 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF850-203 - 1058 1.4e-23 82.6 129.9 30 30 0.0049 4.4 7.7 0.1 2 22 1033 1053 1032 1053 0.91 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF850-203 - 1058 7e-22 76.8 1.4 1 1 1.3e-24 1.2e-21 76.1 1.4 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 1 30 0.47 4.2e+02 0.8 1.4 5 26 165 186 164 187 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 2 30 4.3e-05 0.038 13.7 0.1 6 26 250 270 248 271 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 3 30 0.0015 1.4 8.8 1.0 6 26 278 298 275 299 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 4 30 6.7e-05 0.06 13.1 0.2 7 26 307 326 304 327 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 5 30 0.00031 0.28 11.0 0.5 7 26 335 354 332 355 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 6 30 0.24 2.2e+02 1.7 0.1 7 16 363 372 360 382 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 7 30 0.017 16 5.4 0.1 7 26 391 410 388 411 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 8 30 0.0011 0.99 9.2 0.1 7 26 419 438 416 439 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 9 30 0.051 45 3.9 2.3 7 26 447 466 444 467 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 10 30 0.00079 0.71 9.7 0.2 6 26 474 494 471 495 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 11 30 0.18 1.6e+02 2.2 0.2 6 15 502 511 499 519 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 12 30 0.00022 0.2 11.5 0.3 7 26 531 550 528 551 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 13 30 0.018 16 5.4 0.5 6 26 558 578 555 579 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 14 30 0.19 1.7e+02 2.1 0.2 7 26 587 606 584 607 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 15 30 0.00023 0.21 11.4 0.2 5 26 613 634 610 635 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 16 30 0.031 28 4.6 0.1 6 26 642 662 639 663 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 17 30 0.35 3.2e+02 1.2 1.0 6 16 670 680 667 689 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 18 30 0.0072 6.5 6.6 0.4 9 26 701 718 700 719 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 19 30 0.00023 0.21 11.4 0.4 7 26 727 746 724 747 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 20 30 0.0016 1.4 8.8 0.3 7 23 755 771 753 773 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 21 30 0.014 12 5.7 0.4 6 24 782 800 779 803 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 22 30 0.0022 2 8.3 1.2 7 26 811 830 808 831 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 23 30 0.057 51 3.7 0.8 6 26 838 858 835 859 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 24 30 0.88 7.8e+02 -0.0 0.5 7 26 867 886 865 887 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 25 30 0.12 1e+02 2.7 0.4 5 23 893 911 890 915 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 26 30 4.3 3.9e+03 -2.3 0.5 7 14 923 930 921 942 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 27 30 0.018 16 5.3 0.5 6 24 950 968 948 970 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 28 30 0.068 61 3.5 0.5 7 26 979 998 976 999 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 29 30 0.00037 0.33 10.8 0.2 3 23 1003 1023 1002 1027 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF850-203 - 1058 9e-20 70.1 178.0 30 30 0.15 1.3e+02 2.4 0.2 6 26 1034 1054 1031 1055 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 1 30 0.022 20 4.9 0.1 3 13 165 175 163 180 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 2 30 0.0048 4.3 7.0 0.2 3 21 249 268 247 268 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 3 30 0.036 32 4.2 0.1 3 14 277 288 275 296 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 4 30 0.0084 7.5 6.2 0.1 3 15 305 317 303 324 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 5 30 0.01 9 6.0 0.2 3 15 333 345 331 352 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 6 30 0.034 31 4.3 0.3 3 12 361 370 359 373 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 7 30 0.012 11 5.7 0.1 3 15 389 401 387 408 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 8 30 0.0017 1.5 8.5 0.1 3 21 417 436 415 436 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 9 30 0.091 82 2.9 0.8 3 13 445 455 443 464 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 10 30 0.0016 1.5 8.5 0.0 3 21 473 492 471 492 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 11 30 0.06 54 3.5 0.3 3 12 501 510 499 513 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 12 30 0.005 4.5 7.0 0.1 3 21 529 548 527 548 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 13 30 0.0085 7.6 6.2 0.1 3 21 557 576 555 576 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 14 30 0.027 24 4.6 0.1 3 20 585 603 583 604 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 15 30 0.012 11 5.8 0.1 3 14 613 624 611 632 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 16 30 0.026 23 4.7 0.1 3 12 641 650 639 659 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 17 30 0.063 57 3.4 1.1 3 12 669 678 667 683 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 18 30 0.64 5.7e+02 0.2 0.1 7 21 701 716 700 716 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 19 30 0.0022 1.9 8.1 0.4 3 21 725 744 723 744 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 20 30 0.0017 1.5 8.5 0.3 3 21 753 772 751 773 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 21 30 0.022 20 4.9 0.1 3 15 781 793 779 800 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 22 30 0.00076 0.68 9.6 0.2 2 21 808 828 807 828 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 23 30 0.026 23 4.7 0.2 3 13 837 847 835 856 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 24 30 0.018 16 5.2 0.2 3 21 865 884 863 884 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 25 30 0.2 1.8e+02 1.9 0.1 3 12 893 902 891 908 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 26 30 0.11 98 2.7 0.2 3 12 921 930 919 937 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 27 30 0.02 18 5.0 0.8 3 16 949 963 947 968 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 28 30 0.014 13 5.5 0.9 3 20 977 995 975 996 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 29 30 0.0043 3.9 7.2 0.3 2 11 1004 1013 1003 1015 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF850-203 - 1058 2.6e-19 68.5 145.7 30 30 0.051 46 3.7 0.1 3 20 1033 1051 1031 1052 0.81 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 1 27 0.72 6.5e+02 0.3 0.8 8 36 89 120 89 122 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 2 27 0.066 59 3.7 0.2 3 15 163 175 162 179 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 3 27 0.0036 3.2 7.7 0.1 2 15 246 259 245 261 0.94 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 4 27 0.018 16 5.5 0.1 3 15 275 287 273 289 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 5 27 0.074 67 3.5 0.2 3 14 303 314 301 315 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 6 27 0.0012 1 9.3 0.2 3 17 331 345 329 347 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 7 27 0.0011 0.94 9.4 0.1 3 18 359 374 357 375 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 8 27 0.035 32 4.5 0.1 3 15 387 399 385 401 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 9 27 0.074 67 3.5 0.2 3 14 415 426 413 427 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 10 27 0.00031 0.28 11.1 0.5 3 17 443 457 441 463 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 11 27 0.027 24 4.9 0.1 3 14 471 482 469 483 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 12 27 0.00061 0.55 10.2 0.1 3 18 499 514 497 515 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 13 27 0.038 34 4.4 0.1 3 15 527 539 525 541 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 14 27 0.02 18 5.3 0.1 3 15 555 567 553 570 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 15 27 0.13 1.1e+02 2.8 0.1 3 14 583 594 581 596 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 16 27 0.0088 7.9 6.5 2.7 3 46 611 653 609 654 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 17 27 0.0005 0.45 10.4 1.6 3 27 667 695 665 707 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 18 27 0.035 31 4.6 0.1 3 15 723 735 721 739 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 19 27 0.1 92 3.1 0.2 4 15 752 763 749 765 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 20 27 0.016 14 5.6 0.1 3 15 779 791 777 795 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 21 27 0.042 37 4.3 0.2 3 15 807 819 806 821 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 22 27 0.0022 1.9 8.4 0.1 3 17 835 849 833 852 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 23 27 0.13 1.2e+02 2.7 0.2 3 14 863 874 861 877 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 24 27 0.033 30 4.6 3.1 3 44 891 931 889 934 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 25 27 0.016 14 5.7 0.6 2 15 946 959 945 961 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 26 27 0.14 1.3e+02 2.6 0.2 3 14 975 986 973 987 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF850-203 - 1058 8.4e-19 67.2 146.0 27 27 0.016 14 5.7 3.2 3 45 1003 1044 1001 1046 0.80 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 1 30 0.0017 1.6 8.9 0.2 3 19 166 183 165 184 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 2 30 0.019 17 5.5 0.1 3 12 250 259 248 264 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 3 30 0.1 92 3.2 0.0 3 12 278 287 276 294 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 4 30 0.017 16 5.7 0.1 3 12 306 315 304 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 5 30 0.036 32 4.7 0.2 3 12 334 343 332 348 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 6 30 0.045 40 4.4 0.4 3 11 362 370 360 372 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 7 30 0.022 20 5.3 0.1 3 12 390 399 388 407 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 8 30 0.012 11 6.2 0.1 3 13 418 428 416 435 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 9 30 0.45 4e+02 1.2 2.3 4 11 447 454 445 455 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 10 30 0.007 6.3 6.9 0.1 3 13 474 484 472 491 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 11 30 0.035 31 4.7 0.3 3 11 502 510 500 512 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 12 30 0.021 19 5.4 0.1 3 12 530 539 528 547 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 13 30 0.015 13 5.9 0.1 3 12 558 567 556 575 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 14 30 0.036 33 4.6 0.2 3 11 586 594 584 596 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 15 30 0.024 21 5.2 0.1 3 11 614 622 612 626 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 16 30 0.14 1.2e+02 2.8 0.0 3 13 642 652 640 659 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 17 30 0.038 34 4.6 0.5 3 11 670 678 668 680 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 18 30 2.5 2.2e+03 -1.2 0.0 6 12 701 707 700 714 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 19 30 0.021 19 5.4 0.1 3 12 726 735 724 743 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 20 30 0.025 22 5.2 0.1 3 12 754 763 753 771 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 21 30 0.02 18 5.5 0.1 3 12 782 791 780 799 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 22 30 0.031 27 4.9 0.1 4 12 811 819 808 827 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 23 30 0.027 25 5.0 0.3 3 12 838 847 836 848 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 24 30 0.02 18 5.5 0.1 3 12 866 875 864 883 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 25 30 0.063 57 3.9 0.1 3 11 894 902 892 904 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 26 30 0.34 3e+02 1.6 0.2 3 12 922 931 920 932 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 27 30 0.047 42 4.3 1.0 3 12 950 959 948 965 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 28 30 0.031 28 4.9 0.7 3 11 978 986 976 995 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 29 30 0.28 2.5e+02 1.8 0.1 3 11 1006 1014 1005 1017 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF850-203 - 1058 6.8e-15 54.8 135.7 30 30 0.18 1.6e+02 2.4 0.3 3 12 1034 1043 1032 1044 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 1 16 8.5 7.6e+03 -2.3 0.0 35 51 69 85 62 122 0.72 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 2 16 0.081 72 4.2 1.1 34 76 134 175 108 180 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 3 16 7.9e-05 0.07 13.9 1.4 25 75 236 286 221 292 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 4 16 0.0074 6.6 7.6 0.7 31 76 298 343 291 347 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 5 16 0.029 26 5.6 0.3 25 76 348 399 342 404 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 6 16 0.014 12 6.7 2.1 29 76 408 455 402 460 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 7 16 0.004 3.6 8.4 1.0 32 76 467 511 462 515 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 8 16 0.0055 4.9 8.0 1.4 35 75 526 566 517 572 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 9 16 0.0053 4.8 8.0 1.0 31 74 578 621 571 626 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 10 16 0.0067 6 7.7 2.1 32 75 635 678 630 683 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 11 16 0.059 52 4.7 0.7 40 77 699 736 684 740 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 12 16 0.001 0.92 10.3 1.1 26 75 741 790 735 796 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 13 16 0.0016 1.5 9.7 1.5 30 75 801 846 791 852 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 14 16 0.00079 0.71 10.7 1.2 26 74 853 901 847 905 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 15 16 0.016 15 6.4 2.2 33 76 916 959 910 964 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF850-203 - 1058 6.7e-09 36.4 127.9 16 16 0.37 3.3e+02 2.1 7.2 36 74 975 1013 963 1048 0.69 zinc-ribbon family DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 1 23 1.4 1.2e+03 -0.5 0.1 10 24 158 172 151 178 0.79 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 2 23 7.8 7e+03 -2.9 0.0 10 22 242 254 240 254 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 3 23 1.6 1.4e+03 -0.7 0.0 8 22 268 282 266 283 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 4 23 1.6 1.5e+03 -0.7 0.0 8 22 296 310 291 311 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 5 23 2.1 1.9e+03 -1.1 0.0 8 22 324 338 320 339 0.88 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 6 23 2.1 1.9e+03 -1.1 0.0 8 22 352 366 348 367 0.88 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 7 23 1.4 1.2e+03 -0.5 0.0 6 22 406 422 403 423 0.86 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 8 23 1 9.3e+02 -0.1 0.0 7 22 435 450 432 451 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 9 23 0.85 7.6e+02 0.2 0.0 8 22 464 478 462 479 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 10 23 0.24 2.1e+02 2.0 0.0 7 22 491 506 487 507 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 11 23 0.2 1.8e+02 2.2 0.0 6 22 546 562 541 563 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 12 23 0.54 4.8e+02 0.8 0.0 6 25 574 593 571 596 0.81 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 13 23 1.1 9.8e+02 -0.2 0.0 8 22 604 618 600 622 0.85 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 14 23 2.6 2.3e+03 -1.4 0.0 9 22 661 674 658 675 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 15 23 3.8 3.4e+03 -1.9 0.0 9 22 689 702 684 702 0.83 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 16 23 1.2 1.1e+03 -0.3 0.0 6 22 714 730 711 731 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 17 23 0.6 5.4e+02 0.6 0.0 6 22 742 758 739 759 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 18 23 0.59 5.3e+02 0.7 0.0 10 22 774 786 767 787 0.86 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 19 23 0.083 75 3.4 0.0 4 22 824 842 821 843 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 20 23 1.2 1.1e+03 -0.3 0.0 8 23 856 871 851 875 0.83 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 21 23 1.1 9.8e+02 -0.2 0.0 3 22 879 898 877 902 0.85 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 22 23 1.4 1.3e+03 -0.6 0.0 8 23 968 983 963 988 0.82 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF850-203 - 1058 8.3e-07 28.9 20.9 23 23 0.74 6.6e+02 0.4 0.0 4 22 992 1010 990 1014 0.87 Protein of unknown function (DUF3741) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 1 20 6.7e-09 9.2e-06 25.8 1.3 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 2 20 2e-05 0.027 14.9 3.1 1 21 252 272 252 274 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 3 20 8.1e-07 0.0011 19.3 1.8 1 23 350 372 350 372 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 4 20 5e-08 6.9e-05 23.1 2.8 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 5 20 5.5e-07 0.00076 19.8 0.0 2 23 408 429 407 429 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 6 20 4.8e-06 0.0066 16.9 0.1 1 23 441 463 441 463 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 7 20 1.2e-06 0.0016 18.8 1.1 1 23 550 572 550 572 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 8 20 4.2e-05 0.058 13.9 5.6 1 23 578 600 578 600 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 9 20 2.4e-07 0.00033 20.9 0.5 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 10 20 8.6e-05 0.12 12.9 1.4 1 23 669 691 669 691 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 11 20 0.00095 1.3 9.6 0.1 3 23 699 719 697 719 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 12 20 0.0013 1.7 9.2 1.8 1 23 792 814 792 814 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 13 20 5.3e-05 0.073 13.6 0.1 3 23 822 842 822 842 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 14 20 0.00011 0.15 12.6 1.1 1 21 848 868 848 870 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 15 20 0.00015 0.2 12.2 0.3 1 23 876 898 876 898 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 16 20 1.3e-06 0.0017 18.7 0.3 1 23 904 926 904 926 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 17 20 4.4e-07 0.00061 20.1 1.2 2 23 933 954 932 954 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 18 20 1e-05 0.014 15.8 2.2 1 23 960 982 960 982 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 19 20 6.2e-05 0.086 13.3 0.1 2 23 990 1011 989 1011 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF865-201 - 1059 1.8e-73 239.1 140.8 20 20 2e-05 0.027 14.9 0.3 1 23 1017 1039 1017 1039 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 1 22 0.014 20 5.8 0.1 12 26 221 235 219 235 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 2 22 7.4e-09 1e-05 25.7 0.6 1 26 238 263 238 263 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 3 22 1.3 1.8e+03 -0.4 0.0 2 10 267 275 266 283 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 4 22 0.0047 6.5 7.4 0.2 11 26 346 361 343 361 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 5 22 5.6e-09 7.7e-06 26.1 1.9 3 25 366 388 364 389 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 6 22 0.001 1.4 9.4 0.1 1 24 392 416 392 417 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 7 22 0.00067 0.93 10.0 0.0 9 25 429 451 421 452 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 8 22 0.31 4.2e+02 1.6 0.3 13 25 548 560 544 561 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 9 22 6e-12 8.2e-09 35.5 2.5 2 24 565 587 564 588 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 10 22 7.1e-08 9.8e-05 22.6 3.7 1 25 592 616 592 617 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 11 22 2.1 2.9e+03 -1.0 0.6 1 10 620 629 620 631 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 12 22 1.4 2e+03 -0.5 0.1 15 24 669 678 662 678 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 13 22 8e-06 0.011 16.1 0.6 3 24 685 706 683 707 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 14 22 0.081 1.1e+02 3.5 0.3 11 26 788 803 787 803 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 15 22 0.027 38 5.0 0.0 1 25 806 830 806 830 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 16 22 4e-07 0.00055 20.2 0.3 2 24 835 857 834 859 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 17 22 2e-07 0.00027 21.2 1.2 2 25 863 886 863 887 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 18 22 7.3e-08 0.0001 22.6 0.2 2 25 891 914 890 915 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 19 22 3.9e-05 0.054 13.9 0.2 2 25 919 942 918 943 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 20 22 9.2e-07 0.0013 19.1 0.9 1 24 946 969 946 971 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 21 22 1.1e-06 0.0015 18.9 0.2 4 25 977 999 974 1000 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF865-201 - 1059 1e-67 221.7 126.3 22 22 9.7e-06 0.013 15.9 0.1 2 26 1004 1028 1003 1028 0.94 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 1 20 6.6e-06 0.0092 16.8 1.9 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 2 20 0.0019 2.7 9.1 2.7 1 21 252 272 252 274 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 3 20 0.0044 6 8.0 2.3 1 23 350 372 350 373 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 4 20 2.6e-07 0.00036 21.1 2.7 1 23 378 400 378 401 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 5 20 3.6e-05 0.049 14.5 0.0 2 23 408 429 407 430 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 6 20 2.1e-06 0.0029 18.3 0.1 1 23 441 463 441 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 7 20 8e-06 0.011 16.5 0.8 1 23 550 572 550 573 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 8 20 0.00016 0.22 12.5 4.9 1 23 578 600 578 601 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 9 20 4.7e-06 0.0064 17.2 0.6 1 23 606 628 606 629 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 10 20 0.0025 3.4 8.7 1.3 1 23 669 691 669 692 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 11 20 0.32 4.3e+02 2.2 0.1 2 15 698 711 697 719 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 12 20 0.089 1.2e+02 3.9 1.7 1 23 792 814 792 815 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 13 20 0.00043 0.59 11.1 0.1 3 23 822 842 820 843 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 14 20 0.00029 0.4 11.7 1.4 1 21 848 868 848 870 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 15 20 0.00021 0.29 12.1 0.4 1 23 876 898 876 899 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 16 20 0.00019 0.26 12.2 0.4 1 23 904 926 904 927 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 17 20 0.00021 0.3 12.1 0.8 2 23 933 954 932 955 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 18 20 1.5e-05 0.02 15.7 1.6 1 23 960 982 960 983 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 19 20 0.00012 0.17 12.8 0.2 2 23 990 1011 989 1012 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF865-201 - 1059 2.1e-50 165.0 141.2 20 20 7.6e-06 0.01 16.6 0.4 1 23 1017 1039 1017 1040 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 1 18 0.00073 1 9.7 0.2 2 21 224 243 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 2 18 0.015 20 5.6 0.0 2 21 252 271 251 272 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 3 18 0.0018 2.5 8.5 0.3 2 21 350 369 349 370 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 4 18 2.9e-06 0.0041 17.4 0.8 2 24 378 400 377 401 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 5 18 0.033 45 4.5 0.0 4 21 409 426 406 427 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 6 18 0.042 58 4.1 0.0 2 21 441 460 440 461 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 7 18 0.009 12 6.3 0.0 4 22 552 570 549 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 8 18 0.35 4.8e+02 1.2 0.3 4 17 580 593 577 596 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 9 18 0.0067 9.3 6.7 0.0 2 20 606 624 605 626 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 10 18 0.51 7e+02 0.7 0.1 4 11 699 706 697 707 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 11 18 0.55 7.6e+02 0.6 0.0 4 24 822 842 822 843 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 12 18 0.069 96 3.4 0.0 2 21 848 867 847 868 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 13 18 1.2 1.6e+03 -0.5 0.0 2 14 876 888 875 895 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 14 18 0.0089 12 6.3 0.0 2 21 904 923 903 924 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 15 18 0.072 99 3.4 0.1 4 21 934 951 933 952 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 16 18 0.081 1.1e+02 3.2 0.4 2 11 960 969 959 970 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 17 18 0.012 16 5.9 0.0 3 21 990 1008 988 1009 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF865-201 - 1059 3.7e-22 78.1 40.7 18 18 0.49 6.8e+02 0.7 0.0 2 20 1017 1035 1016 1037 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 1 18 0.00027 0.37 11.3 0.5 3 20 226 243 224 244 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 2 18 0.00072 1 9.9 0.1 1 19 252 270 252 272 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 3 18 0.016 22 5.6 0.5 1 19 350 368 350 370 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 4 18 2.1e-05 0.029 14.8 1.4 1 21 378 398 378 400 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 5 18 0.025 34 5.0 0.0 3 20 409 426 407 429 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 6 18 0.0054 7.4 7.1 0.1 3 20 443 460 441 463 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 7 18 0.0094 13 6.3 0.1 1 21 550 570 550 573 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 8 18 0.17 2.3e+02 2.4 0.3 2 11 579 588 578 596 0.75 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 9 18 0.0051 7 7.2 0.1 1 19 606 624 606 629 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 10 18 0.51 7.1e+02 0.8 0.1 3 10 699 706 697 710 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 11 18 2.1 2.9e+03 -1.1 0.2 1 11 792 802 792 803 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 12 18 0.15 2e+02 2.6 0.0 3 24 822 843 820 843 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 13 18 0.075 1e+02 3.5 0.0 1 11 848 858 848 868 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 14 18 0.22 3e+02 2.0 0.0 1 19 876 894 876 895 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 15 18 0.027 37 4.9 0.1 1 19 904 922 904 924 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 16 18 0.0029 4 8.0 0.1 3 20 934 951 933 952 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 17 18 0.47 6.5e+02 0.9 0.4 1 20 960 979 960 982 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF865-201 - 1059 5.9e-19 67.8 67.8 18 18 0.00019 0.26 11.7 0.0 2 21 990 1009 989 1012 0.91 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 1 20 0.05 68 3.6 0.3 2 12 224 234 223 243 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 2 20 1.1e-05 0.015 15.3 1.8 2 26 252 276 252 277 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 3 20 0.33 4.6e+02 1.0 0.2 2 12 350 360 350 361 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 4 20 7.5e-05 0.1 12.6 2.0 2 25 378 401 378 402 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 5 20 0.42 5.9e+02 0.6 0.0 4 12 409 417 408 429 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 6 20 4.5e-06 0.0062 16.5 0.0 1 24 440 463 440 466 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 7 20 0.091 1.3e+02 2.8 0.3 2 12 550 560 549 562 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 8 20 0.0015 2 8.5 0.4 2 12 578 588 578 589 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 9 20 4.3e-06 0.006 16.6 0.6 2 25 606 629 606 630 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 10 20 0.46 6.4e+02 0.5 0.6 2 14 669 681 668 694 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 11 20 1.3e-05 0.018 15.0 0.1 2 21 697 716 697 721 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 12 20 0.017 24 5.1 2.8 2 24 792 814 791 815 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 13 20 0.013 18 5.5 0.6 4 26 822 844 821 845 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 14 20 0.0034 4.7 7.3 1.7 2 23 848 869 848 873 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 15 20 0.44 6e+02 0.6 0.1 2 11 876 885 876 886 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 16 20 0.0049 6.8 6.8 0.5 1 24 903 926 903 927 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 17 20 0.0013 1.8 8.7 0.7 3 24 933 954 933 957 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 18 20 0.11 1.5e+02 2.5 0.6 1 24 959 982 959 985 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 19 20 0.85 1.2e+03 -0.3 0.2 3 12 990 999 990 999 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF865-201 - 1059 7.4e-18 64.1 121.9 20 20 0.00087 1.2 9.2 1.1 2 26 1017 1041 1017 1042 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 1 11 0.02 15 6.3 0.4 5 25 264 284 260 285 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 2 11 8.6e-10 6.1e-07 29.6 0.8 1 24 288 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 3 11 1e-10 7.3e-08 32.5 0.3 2 25 317 340 317 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 4 11 7.9e-10 5.6e-07 29.7 1.4 1 25 344 368 344 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 5 11 9.1e-09 6.6e-06 26.3 2.1 4 25 375 396 372 397 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 6 11 9.5e-10 6.8e-07 29.4 0.1 2 25 401 424 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 7 11 1.6e-06 0.0011 19.3 3.5 1 25 428 452 428 453 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 8 11 3.5e-11 2.5e-08 34.0 0.1 2 24 456 478 455 480 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 9 11 7.1e-12 5.1e-09 36.2 0.5 1 25 483 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 10 11 1.4e-09 1e-06 28.9 0.2 2 24 512 534 512 535 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-201 - 604 3.2e-81 264.4 69.4 11 11 1.1e-11 8.1e-09 35.5 0.1 2 25 540 563 539 564 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 1 11 6.5e-08 4.6e-05 23.6 1.4 3 23 276 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 2 11 1.2e-05 0.0083 16.5 0.1 1 23 302 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 3 11 2.4e-09 1.8e-06 28.1 0.2 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 4 11 9e-08 6.4e-05 23.2 2.1 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 5 11 2.7e-06 0.0019 18.5 1.2 1 23 386 408 386 408 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 6 11 7.6e-08 5.4e-05 23.4 0.4 1 23 414 436 414 437 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 7 11 5.9e-08 4.3e-05 23.7 0.5 1 23 442 463 442 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 8 11 2.9e-07 0.00021 21.6 0.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 9 11 4e-08 2.9e-05 24.3 0.7 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 10 11 1.8e-05 0.013 15.9 0.1 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-201 - 604 1.1e-56 186.2 66.8 11 11 0.00087 0.62 10.6 0.6 1 13 553 565 553 567 0.91 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN12-201 - 604 2.5e-44 149.0 6.8 1 1 8e-47 5.7e-44 147.8 6.8 2 89 43 130 42 131 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 1 11 0.0004 0.29 12.1 1.0 2 23 275 296 274 297 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 2 11 0.0002 0.14 13.0 0.1 1 23 302 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 3 11 2.2e-05 0.015 16.0 0.3 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 4 11 1.9e-05 0.014 16.2 1.6 1 23 358 380 358 381 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 5 11 5.5e-05 0.039 14.8 0.9 1 23 386 408 386 409 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 6 11 1.5e-05 0.011 16.5 0.6 1 24 414 437 414 437 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 7 11 6e-06 0.0043 17.8 0.5 1 23 442 463 442 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 8 11 0.00036 0.26 12.2 0.4 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 9 11 0.00024 0.17 12.8 0.5 1 23 497 519 497 520 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 10 11 0.00018 0.13 13.1 0.1 1 23 525 547 525 548 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-201 - 604 3e-33 111.6 62.8 11 11 0.0089 6.4 7.9 0.2 1 15 553 567 553 580 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 1 11 0.067 48 4.1 1.1 2 20 274 292 273 297 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 2 11 0.00057 0.41 10.7 0.1 2 24 302 324 302 327 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 3 11 1.8e-05 0.013 15.5 0.6 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 4 11 0.23 1.6e+02 2.4 1.1 1 12 357 368 357 380 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 5 11 0.0012 0.89 9.6 1.5 2 12 386 396 386 397 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 6 11 7.4e-05 0.053 13.5 1.9 2 26 414 439 414 440 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 7 11 0.00073 0.52 10.4 1.5 2 12 442 452 441 463 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 8 11 0.00058 0.42 10.7 0.2 2 24 469 491 469 494 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 9 11 0.0013 0.91 9.6 0.5 2 22 497 517 497 521 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 10 11 2.8e-05 0.02 14.9 0.1 2 24 525 547 525 550 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-201 - 604 7.9e-19 67.2 68.7 11 11 0.0023 1.6 8.8 0.3 2 12 553 563 553 564 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 1 11 9.2 6.6e+03 -2.7 0.7 11 25 223 236 221 252 0.46 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 2 11 6.6e-05 0.047 13.8 3.2 6 36 274 311 273 315 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 3 11 6.7e-05 0.048 13.8 4.0 6 35 302 338 301 342 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 4 11 0.0042 3 8.0 0.2 6 20 330 344 329 351 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 5 11 3.1e-05 0.022 14.9 2.3 6 38 358 397 357 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 6 11 0.00046 0.33 11.1 4.0 6 34 386 421 385 425 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 7 11 0.023 16 5.7 1.1 6 16 414 424 412 441 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 8 11 0.0001 0.075 13.2 2.8 6 34 442 476 441 482 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 9 11 1.8e-05 0.013 15.6 2.9 6 36 497 534 496 538 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 10 11 1.3e-05 0.0094 16.1 3.0 6 38 525 564 523 567 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-201 - 604 1.1e-12 47.9 59.2 11 11 0.0073 5.3 7.3 0.8 6 21 553 568 550 572 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 1 12 7.1 5.1e+03 -2.8 0.1 6 19 221 234 221 234 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 2 12 0.00037 0.26 10.9 0.8 1 21 272 293 272 293 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 3 12 0.02 14 5.4 0.2 3 12 302 311 300 313 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 4 12 0.0054 3.9 7.2 0.0 3 21 330 349 328 349 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 5 12 0.048 35 4.1 0.1 2 14 357 369 356 372 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 6 12 0.0036 2.6 7.7 0.2 3 20 386 404 384 405 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 7 12 0.058 41 3.9 0.1 3 19 414 431 412 433 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 8 12 0.00022 0.16 11.6 1.1 2 21 441 460 440 460 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 9 12 0.031 22 4.7 0.2 3 21 469 488 467 488 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 10 12 0.0016 1.1 8.8 0.1 3 21 497 516 495 516 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 11 12 0.058 42 3.9 0.1 3 12 525 534 523 544 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-201 - 604 9.9e-11 41.0 54.4 12 12 0.0067 4.8 6.9 0.3 3 14 553 564 551 569 0.80 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 1 11 0.032 23 5.1 0.2 4 12 276 284 275 292 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 2 11 0.0081 5.8 7.0 0.2 3 11 303 311 301 313 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 3 11 0.019 13 5.9 0.1 3 12 331 340 329 341 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 4 11 0.088 63 3.7 0.2 3 12 359 368 358 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 5 11 0.28 2e+02 2.1 0.1 3 12 387 396 385 404 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 6 11 0.027 19 5.4 0.0 3 11 415 423 413 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 7 11 0.00078 0.56 10.3 0.3 3 18 443 458 442 460 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 8 11 0.27 1.9e+02 2.2 0.2 3 11 470 478 468 480 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 9 11 0.0062 4.5 7.4 0.1 3 13 498 508 496 515 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 10 11 0.033 24 5.1 0.1 3 11 526 534 524 536 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-201 - 604 1.7e-09 37.5 42.7 11 11 0.0088 6.3 6.9 0.2 3 12 554 563 552 565 0.88 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 1 7 2.7e-05 0.019 15.2 0.8 41 87 277 322 246 333 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 2 7 0.00054 0.39 11.1 1.8 37 89 331 380 323 388 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 3 7 0.074 53 4.2 5.6 33 77 411 452 385 472 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 4 7 0.022 16 5.9 2.1 37 88 443 490 437 496 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 5 7 0.0056 4 7.8 0.9 34 86 467 516 452 523 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 6 7 0.00014 0.098 13.0 0.2 41 88 500 546 490 552 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-201 - 604 3.6e-08 33.6 30.8 7 7 0.003 2.2 8.6 0.1 41 80 528 566 521 580 0.76 C2H2-type zinc ribbon C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 1 9 0.055 40 4.2 1.5 14 36 276 309 266 311 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 2 9 0.044 31 4.5 0.1 5 23 296 313 288 318 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 3 9 0.0034 2.4 8.1 6.2 1 38 320 367 320 370 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 4 9 0.00016 0.12 12.3 2.4 1 36 375 421 375 423 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 5 9 0.005 3.6 7.6 3.6 4 36 407 449 404 454 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 6 9 0.17 1.2e+02 2.7 6.0 9 36 439 476 431 478 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 7 9 0.0026 1.9 8.5 1.1 5 37 463 505 458 509 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 8 9 0.00097 0.7 9.8 0.4 5 36 491 532 486 535 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-201 - 604 6.7e-06 25.9 48.9 9 9 0.052 37 4.3 0.3 5 26 547 567 540 571 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 1 11 0.02 15 6.3 0.4 5 25 264 284 260 285 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 2 11 8.6e-10 6.1e-07 29.6 0.8 1 24 288 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 3 11 1e-10 7.3e-08 32.5 0.3 2 25 317 340 317 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 4 11 7.9e-10 5.6e-07 29.7 1.4 1 25 344 368 344 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 5 11 9.1e-09 6.6e-06 26.3 2.1 4 25 375 396 372 397 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 6 11 9.5e-10 6.8e-07 29.4 0.1 2 25 401 424 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 7 11 1.6e-06 0.0011 19.3 3.5 1 25 428 452 428 453 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 8 11 3.5e-11 2.5e-08 34.0 0.1 2 24 456 478 455 480 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 9 11 7.1e-12 5.1e-09 36.2 0.5 1 25 483 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 10 11 1.4e-09 1e-06 28.9 0.2 2 24 512 534 512 535 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN12-202 - 604 3.2e-81 264.4 69.4 11 11 1.1e-11 8.1e-09 35.5 0.1 2 25 540 563 539 564 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 1 11 6.5e-08 4.6e-05 23.6 1.4 3 23 276 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 2 11 1.2e-05 0.0083 16.5 0.1 1 23 302 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 3 11 2.4e-09 1.8e-06 28.1 0.2 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 4 11 9e-08 6.4e-05 23.2 2.1 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 5 11 2.7e-06 0.0019 18.5 1.2 1 23 386 408 386 408 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 6 11 7.6e-08 5.4e-05 23.4 0.4 1 23 414 436 414 437 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 7 11 5.9e-08 4.3e-05 23.7 0.5 1 23 442 463 442 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 8 11 2.9e-07 0.00021 21.6 0.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 9 11 4e-08 2.9e-05 24.3 0.7 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 10 11 1.8e-05 0.013 15.9 0.1 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN12-202 - 604 1.1e-56 186.2 66.8 11 11 0.00087 0.62 10.6 0.6 1 13 553 565 553 567 0.91 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN12-202 - 604 2.5e-44 149.0 6.8 1 1 8e-47 5.7e-44 147.8 6.8 2 89 43 130 42 131 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 1 11 0.0004 0.29 12.1 1.0 2 23 275 296 274 297 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 2 11 0.0002 0.14 13.0 0.1 1 23 302 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 3 11 2.2e-05 0.015 16.0 0.3 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 4 11 1.9e-05 0.014 16.2 1.6 1 23 358 380 358 381 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 5 11 5.5e-05 0.039 14.8 0.9 1 23 386 408 386 409 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 6 11 1.5e-05 0.011 16.5 0.6 1 24 414 437 414 437 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 7 11 6e-06 0.0043 17.8 0.5 1 23 442 463 442 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 8 11 0.00036 0.26 12.2 0.4 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 9 11 0.00024 0.17 12.8 0.5 1 23 497 519 497 520 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 10 11 0.00018 0.13 13.1 0.1 1 23 525 547 525 548 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN12-202 - 604 3e-33 111.6 62.8 11 11 0.0089 6.4 7.9 0.2 1 15 553 567 553 580 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 1 11 0.067 48 4.1 1.1 2 20 274 292 273 297 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 2 11 0.00057 0.41 10.7 0.1 2 24 302 324 302 327 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 3 11 1.8e-05 0.013 15.5 0.6 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 4 11 0.23 1.6e+02 2.4 1.1 1 12 357 368 357 380 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 5 11 0.0012 0.89 9.6 1.5 2 12 386 396 386 397 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 6 11 7.4e-05 0.053 13.5 1.9 2 26 414 439 414 440 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 7 11 0.00073 0.52 10.4 1.5 2 12 442 452 441 463 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 8 11 0.00058 0.42 10.7 0.2 2 24 469 491 469 494 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 9 11 0.0013 0.91 9.6 0.5 2 22 497 517 497 521 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 10 11 2.8e-05 0.02 14.9 0.1 2 24 525 547 525 550 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN12-202 - 604 7.9e-19 67.2 68.7 11 11 0.0023 1.6 8.8 0.3 2 12 553 563 553 564 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 1 11 9.2 6.6e+03 -2.7 0.7 11 25 223 236 221 252 0.46 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 2 11 6.6e-05 0.047 13.8 3.2 6 36 274 311 273 315 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 3 11 6.7e-05 0.048 13.8 4.0 6 35 302 338 301 342 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 4 11 0.0042 3 8.0 0.2 6 20 330 344 329 351 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 5 11 3.1e-05 0.022 14.9 2.3 6 38 358 397 357 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 6 11 0.00046 0.33 11.1 4.0 6 34 386 421 385 425 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 7 11 0.023 16 5.7 1.1 6 16 414 424 412 441 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 8 11 0.0001 0.075 13.2 2.8 6 34 442 476 441 482 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 9 11 1.8e-05 0.013 15.6 2.9 6 36 497 534 496 538 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 10 11 1.3e-05 0.0094 16.1 3.0 6 38 525 564 523 567 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN12-202 - 604 1.1e-12 47.9 59.2 11 11 0.0073 5.3 7.3 0.8 6 21 553 568 550 572 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 1 12 7.1 5.1e+03 -2.8 0.1 6 19 221 234 221 234 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 2 12 0.00037 0.26 10.9 0.8 1 21 272 293 272 293 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 3 12 0.02 14 5.4 0.2 3 12 302 311 300 313 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 4 12 0.0054 3.9 7.2 0.0 3 21 330 349 328 349 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 5 12 0.048 35 4.1 0.1 2 14 357 369 356 372 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 6 12 0.0036 2.6 7.7 0.2 3 20 386 404 384 405 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 7 12 0.058 41 3.9 0.1 3 19 414 431 412 433 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 8 12 0.00022 0.16 11.6 1.1 2 21 441 460 440 460 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 9 12 0.031 22 4.7 0.2 3 21 469 488 467 488 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 10 12 0.0016 1.1 8.8 0.1 3 21 497 516 495 516 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 11 12 0.058 42 3.9 0.1 3 12 525 534 523 544 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN12-202 - 604 9.9e-11 41.0 54.4 12 12 0.0067 4.8 6.9 0.3 3 14 553 564 551 569 0.80 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 1 11 0.032 23 5.1 0.2 4 12 276 284 275 292 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 2 11 0.0081 5.8 7.0 0.2 3 11 303 311 301 313 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 3 11 0.019 13 5.9 0.1 3 12 331 340 329 341 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 4 11 0.088 63 3.7 0.2 3 12 359 368 358 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 5 11 0.28 2e+02 2.1 0.1 3 12 387 396 385 404 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 6 11 0.027 19 5.4 0.0 3 11 415 423 413 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 7 11 0.00078 0.56 10.3 0.3 3 18 443 458 442 460 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 8 11 0.27 1.9e+02 2.2 0.2 3 11 470 478 468 480 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 9 11 0.0062 4.5 7.4 0.1 3 13 498 508 496 515 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 10 11 0.033 24 5.1 0.1 3 11 526 534 524 536 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN12-202 - 604 1.7e-09 37.5 42.7 11 11 0.0088 6.3 6.9 0.2 3 12 554 563 552 565 0.88 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 1 7 2.7e-05 0.019 15.2 0.8 41 87 277 322 246 333 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 2 7 0.00054 0.39 11.1 1.8 37 89 331 380 323 388 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 3 7 0.074 53 4.2 5.6 33 77 411 452 385 472 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 4 7 0.022 16 5.9 2.1 37 88 443 490 437 496 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 5 7 0.0056 4 7.8 0.9 34 86 467 516 452 523 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 6 7 0.00014 0.098 13.0 0.2 41 88 500 546 490 552 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZSCAN12-202 - 604 3.6e-08 33.6 30.8 7 7 0.003 2.2 8.6 0.1 41 80 528 566 521 580 0.76 C2H2-type zinc ribbon C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 1 9 0.055 40 4.2 1.5 14 36 276 309 266 311 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 2 9 0.044 31 4.5 0.1 5 23 296 313 288 318 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 3 9 0.0034 2.4 8.1 6.2 1 38 320 367 320 370 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 4 9 0.00016 0.12 12.3 2.4 1 36 375 421 375 423 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 5 9 0.005 3.6 7.6 3.6 4 36 407 449 404 454 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 6 9 0.17 1.2e+02 2.7 6.0 9 36 439 476 431 478 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 7 9 0.0026 1.9 8.5 1.1 5 37 463 505 458 509 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 8 9 0.00097 0.7 9.8 0.4 5 36 491 532 486 535 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZSCAN12-202 - 604 6.7e-06 25.9 48.9 9 9 0.052 37 4.3 0.3 5 26 547 567 540 571 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 1 8 2.8e-05 0.022 15.2 0.8 8 25 261 279 259 280 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 2 8 3.6e-05 0.028 14.8 0.2 1 25 283 306 283 306 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 3 8 1.5e-08 1.2e-05 25.5 0.9 2 25 311 334 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 4 8 7.9e-09 6.1e-06 26.4 1.2 1 25 338 362 338 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 5 8 1.8e-07 0.00014 22.1 2.5 1 25 366 389 366 390 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 6 8 6e-08 4.7e-05 23.6 0.3 1 25 393 417 393 418 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 7 8 1.8e-12 1.4e-09 37.9 0.8 2 25 422 445 421 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-201 - 465 3.5e-41 137.8 49.2 8 8 0.18 1.4e+02 3.1 0.1 2 12 450 461 449 464 0.82 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN25-201 - 465 1.6e-39 133.6 2.3 1 1 3.9e-42 3e-39 132.7 2.3 1 86 31 116 31 120 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 1 7 3.6e-11 2.8e-08 33.8 0.7 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 2 7 1.2e-06 0.00095 19.5 0.4 3 23 298 318 296 318 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 3 7 5.8e-08 4.5e-05 23.7 4.2 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 4 7 5.3e-09 4.1e-06 26.9 3.8 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 5 7 1.4e-06 0.0011 19.4 0.4 5 23 383 401 380 401 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 6 7 1.1e-05 0.0088 16.5 0.4 3 23 409 429 407 429 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-201 - 465 2.6e-38 128.4 51.6 7 7 2.1e-06 0.0016 18.8 2.2 1 23 435 458 435 458 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 1 7 1.2e-07 9.2e-05 23.0 0.5 1 23 269 291 269 292 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 2 7 0.00027 0.21 12.5 0.3 2 23 297 318 296 319 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 3 7 0.013 9.8 7.3 4.4 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 4 7 0.00074 0.57 11.2 3.0 1 23 352 374 352 375 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 5 7 0.00033 0.26 12.2 0.4 2 23 381 401 380 402 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 6 7 3.7e-05 0.029 15.2 0.4 2 23 408 429 407 430 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-201 - 465 6.7e-20 70.1 49.2 7 7 5.8e-06 0.0045 17.7 1.6 1 24 435 458 435 458 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 1 7 4.4e-05 0.034 14.4 0.0 2 24 269 291 268 292 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 2 7 0.045 35 4.8 0.0 4 24 298 318 296 319 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 3 7 0.035 27 5.2 1.4 2 24 324 346 323 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 4 7 0.037 28 5.1 0.4 2 24 352 374 351 374 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 5 7 0.65 5e+02 1.1 0.1 6 21 383 398 382 399 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 6 7 0.014 11 6.5 0.0 4 22 409 427 406 427 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-201 - 465 2.2e-08 34.1 22.3 7 7 0.012 9.5 6.6 0.2 4 23 437 456 434 459 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZSCAN25-201 - 465 6.2e-06 26.2 25.5 1 5 0.00073 0.57 10.4 3.2 6 34 269 303 268 311 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-201 - 465 6.2e-06 26.2 25.5 2 5 0.0085 6.6 6.9 2.5 6 35 324 360 323 366 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-201 - 465 6.2e-06 26.2 25.5 3 5 0.03 24 5.2 2.2 6 35 352 387 350 391 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-201 - 465 6.2e-06 26.2 25.5 4 5 0.0045 3.5 7.8 1.3 6 37 380 417 379 419 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-201 - 465 6.2e-06 26.2 25.5 5 5 1.1e-06 0.00083 19.4 0.7 6 34 407 442 406 449 0.89 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 1 8 3.4e-05 0.026 14.9 0.8 8 25 340 358 338 359 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 2 8 4.4e-05 0.034 14.6 0.2 1 25 362 385 362 385 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 3 8 1.9e-08 1.5e-05 25.2 0.9 2 25 390 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 4 8 9.5e-09 7.4e-06 26.2 1.2 1 25 417 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 5 8 2.1e-07 0.00017 21.9 2.5 1 25 445 468 445 469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 6 8 7.2e-08 5.6e-05 23.4 0.3 1 25 472 496 472 497 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 7 8 2.2e-12 1.7e-09 37.7 0.8 2 25 501 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-202 - 544 1.5e-40 135.8 49.2 8 8 0.22 1.7e+02 2.9 0.1 2 12 529 540 528 543 0.82 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN25-202 - 544 2.1e-39 133.2 2.3 1 1 5e-42 3.9e-39 132.4 2.3 1 86 38 123 38 127 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 1 7 4.3e-11 3.4e-08 33.5 0.7 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 2 7 1.5e-06 0.0011 19.2 0.4 3 23 377 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 3 7 7e-08 5.5e-05 23.4 4.2 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 4 7 6.3e-09 4.9e-06 26.7 3.8 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 5 7 1.6e-06 0.0013 19.1 0.4 5 23 462 480 459 480 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 6 7 1.4e-05 0.011 16.2 0.4 3 23 488 508 486 508 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-202 - 544 9.2e-38 126.6 51.6 7 7 2.5e-06 0.002 18.5 2.2 1 23 514 537 514 537 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 1 7 1.4e-07 0.00011 22.7 0.5 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 2 7 0.00032 0.25 12.3 0.3 2 23 376 397 375 398 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 3 7 0.015 12 7.1 4.4 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 4 7 0.00089 0.69 10.9 3.0 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 5 7 0.0004 0.31 12.0 0.4 2 23 460 480 459 481 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 6 7 4.5e-05 0.035 14.9 0.4 2 23 487 508 486 509 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-202 - 544 2.4e-19 68.4 49.2 7 7 7e-06 0.0054 17.5 1.6 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 1 7 5.3e-05 0.041 14.2 0.0 2 24 348 370 347 371 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 2 7 0.054 42 4.6 0.0 4 24 377 397 375 398 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 3 7 0.042 33 4.9 1.4 2 24 403 425 402 425 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 4 7 0.044 34 4.9 0.4 2 24 431 453 430 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 5 7 0.77 6e+02 0.9 0.1 6 21 462 477 461 478 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 6 7 0.017 13 6.2 0.0 4 22 488 506 485 506 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-202 - 544 7.9e-08 32.4 22.3 7 7 0.015 11 6.4 0.2 4 23 516 535 513 538 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 1 8 2.3e-05 0.017 15.5 0.8 8 25 176 194 174 195 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 2 8 3e-05 0.022 15.2 0.2 1 25 198 221 198 221 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 3 8 1.3e-08 9.4e-06 25.8 0.9 2 25 226 249 225 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 4 8 6.4e-09 4.8e-06 26.8 1.2 1 25 253 277 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 5 8 1.5e-07 0.00011 22.5 2.5 1 25 281 304 281 305 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 6 8 4.9e-08 3.6e-05 24.0 0.3 1 25 308 332 308 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 7 8 1.5e-12 1.1e-09 38.3 0.8 2 25 337 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-203 - 380 6.5e-42 140.2 49.2 8 8 0.15 1.1e+02 3.4 0.1 2 12 365 376 364 379 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 1 7 2.9e-11 2.2e-08 34.1 0.7 1 23 184 206 184 206 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 2 7 9.9e-07 0.00074 19.8 0.4 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 3 7 4.7e-08 3.5e-05 24.0 4.2 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 4 7 4.3e-09 3.2e-06 27.3 3.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 5 7 1.1e-06 0.00083 19.7 0.4 5 23 298 316 295 316 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 6 7 9.2e-06 0.0069 16.8 0.4 3 23 324 344 322 344 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-203 - 380 4.9e-39 130.6 51.6 7 7 1.7e-06 0.0013 19.1 2.2 1 23 350 373 350 373 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 1 7 9.5e-08 7.1e-05 23.3 0.5 1 23 184 206 184 207 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 2 7 0.00022 0.16 12.9 0.3 2 23 212 233 211 234 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 3 7 0.01 7.6 7.7 4.4 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 4 7 0.0006 0.45 11.5 3.0 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 5 7 0.00027 0.2 12.6 0.4 2 23 296 316 295 317 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 6 7 3e-05 0.022 15.5 0.4 2 23 323 344 322 345 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-203 - 380 1.3e-20 72.3 49.2 7 7 4.7e-06 0.0035 18.1 1.6 1 24 350 373 350 373 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 1 7 3.6e-05 0.027 14.8 0.0 2 24 184 206 183 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 2 7 0.033 25 5.3 0.1 4 24 213 233 210 234 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 3 7 0.028 21 5.5 1.4 2 24 239 261 238 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 4 7 0.03 22 5.5 0.4 2 24 267 289 266 289 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 5 7 0.53 4e+02 1.5 0.1 6 21 298 313 297 314 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 6 7 0.011 8.5 6.8 0.0 4 22 324 342 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-203 - 380 6.5e-09 35.8 22.6 7 7 0.0099 7.4 7.0 0.2 4 23 352 371 349 374 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZSCAN25-203 - 380 2.4e-06 27.5 25.7 1 4 0.0006 0.45 10.7 3.2 6 34 184 218 183 225 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-203 - 380 2.4e-06 27.5 25.7 2 4 0.0061 4.6 7.4 2.3 6 35 239 275 238 280 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-203 - 380 2.4e-06 27.5 25.7 3 4 0.023 17 5.6 2.2 6 35 267 302 266 306 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-203 - 380 2.4e-06 27.5 25.7 4 4 1.3e-05 0.0098 16.0 4.6 6 34 322 357 294 364 0.93 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 1 7 4.3e-05 0.032 14.2 0.9 2 26 184 208 184 209 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 2 7 0.062 46 4.2 2.4 2 25 211 234 210 236 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 3 7 0.019 14 5.8 2.8 2 24 239 261 239 264 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 4 7 0.016 12 6.1 2.2 2 24 267 289 267 292 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 5 7 0.0062 4.6 7.4 0.3 6 24 298 316 297 319 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 6 7 0.00013 0.1 12.7 0.3 2 18 322 338 322 345 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-203 - 380 8.4e-06 25.7 50.9 7 7 0.027 20 5.3 1.5 2 26 350 375 350 376 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 1 8 3.4e-05 0.026 14.9 0.8 8 25 340 358 338 359 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 2 8 4.4e-05 0.034 14.6 0.2 1 25 362 385 362 385 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 3 8 1.9e-08 1.5e-05 25.2 0.9 2 25 390 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 4 8 9.5e-09 7.4e-06 26.2 1.2 1 25 417 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 5 8 2.1e-07 0.00017 21.9 2.5 1 25 445 468 445 469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 6 8 7.2e-08 5.6e-05 23.4 0.3 1 25 472 496 472 497 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 7 8 2.2e-12 1.7e-09 37.7 0.8 2 25 501 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-204 - 544 1.5e-40 135.8 49.2 8 8 0.22 1.7e+02 2.9 0.1 2 12 529 540 528 543 0.82 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN25-204 - 544 2.1e-39 133.2 2.3 1 1 5e-42 3.9e-39 132.4 2.3 1 86 38 123 38 127 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 1 7 4.3e-11 3.4e-08 33.5 0.7 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 2 7 1.5e-06 0.0011 19.2 0.4 3 23 377 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 3 7 7e-08 5.5e-05 23.4 4.2 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 4 7 6.3e-09 4.9e-06 26.7 3.8 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 5 7 1.6e-06 0.0013 19.1 0.4 5 23 462 480 459 480 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 6 7 1.4e-05 0.011 16.2 0.4 3 23 488 508 486 508 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-204 - 544 9.2e-38 126.6 51.6 7 7 2.5e-06 0.002 18.5 2.2 1 23 514 537 514 537 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 1 7 1.4e-07 0.00011 22.7 0.5 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 2 7 0.00032 0.25 12.3 0.3 2 23 376 397 375 398 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 3 7 0.015 12 7.1 4.4 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 4 7 0.00089 0.69 10.9 3.0 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 5 7 0.0004 0.31 12.0 0.4 2 23 460 480 459 481 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 6 7 4.5e-05 0.035 14.9 0.4 2 23 487 508 486 509 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-204 - 544 2.4e-19 68.4 49.2 7 7 7e-06 0.0054 17.5 1.6 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 1 7 5.3e-05 0.041 14.2 0.0 2 24 348 370 347 371 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 2 7 0.054 42 4.6 0.0 4 24 377 397 375 398 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 3 7 0.042 33 4.9 1.4 2 24 403 425 402 425 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 4 7 0.044 34 4.9 0.4 2 24 431 453 430 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 5 7 0.77 6e+02 0.9 0.1 6 21 462 477 461 478 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 6 7 0.017 13 6.2 0.0 4 22 488 506 485 506 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-204 - 544 7.9e-08 32.4 22.3 7 7 0.015 11 6.4 0.2 4 23 516 535 513 538 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 1 8 2.3e-05 0.017 15.5 0.8 8 25 176 194 174 195 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 2 8 3e-05 0.022 15.2 0.2 1 25 198 221 198 221 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 3 8 1.3e-08 9.4e-06 25.8 0.9 2 25 226 249 225 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 4 8 6.4e-09 4.8e-06 26.8 1.2 1 25 253 277 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 5 8 1.5e-07 0.00011 22.5 2.5 1 25 281 304 281 305 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 6 8 4.9e-08 3.6e-05 24.0 0.3 1 25 308 332 308 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 7 8 1.5e-12 1.1e-09 38.3 0.8 2 25 337 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-208 - 380 6.5e-42 140.2 49.2 8 8 0.15 1.1e+02 3.4 0.1 2 12 365 376 364 379 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 1 7 2.9e-11 2.2e-08 34.1 0.7 1 23 184 206 184 206 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 2 7 9.9e-07 0.00074 19.8 0.4 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 3 7 4.7e-08 3.5e-05 24.0 4.2 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 4 7 4.3e-09 3.2e-06 27.3 3.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 5 7 1.1e-06 0.00083 19.7 0.4 5 23 298 316 295 316 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 6 7 9.2e-06 0.0069 16.8 0.4 3 23 324 344 322 344 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-208 - 380 4.9e-39 130.6 51.6 7 7 1.7e-06 0.0013 19.1 2.2 1 23 350 373 350 373 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 1 7 9.5e-08 7.1e-05 23.3 0.5 1 23 184 206 184 207 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 2 7 0.00022 0.16 12.9 0.3 2 23 212 233 211 234 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 3 7 0.01 7.6 7.7 4.4 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 4 7 0.0006 0.45 11.5 3.0 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 5 7 0.00027 0.2 12.6 0.4 2 23 296 316 295 317 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 6 7 3e-05 0.022 15.5 0.4 2 23 323 344 322 345 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-208 - 380 1.3e-20 72.3 49.2 7 7 4.7e-06 0.0035 18.1 1.6 1 24 350 373 350 373 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 1 7 3.6e-05 0.027 14.8 0.0 2 24 184 206 183 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 2 7 0.033 25 5.3 0.1 4 24 213 233 210 234 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 3 7 0.028 21 5.5 1.4 2 24 239 261 238 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 4 7 0.03 22 5.5 0.4 2 24 267 289 266 289 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 5 7 0.53 4e+02 1.5 0.1 6 21 298 313 297 314 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 6 7 0.011 8.5 6.8 0.0 4 22 324 342 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-208 - 380 6.5e-09 35.8 22.6 7 7 0.0099 7.4 7.0 0.2 4 23 352 371 349 374 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZSCAN25-208 - 380 2.4e-06 27.5 25.7 1 4 0.0006 0.45 10.7 3.2 6 34 184 218 183 225 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-208 - 380 2.4e-06 27.5 25.7 2 4 0.0061 4.6 7.4 2.3 6 35 239 275 238 280 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-208 - 380 2.4e-06 27.5 25.7 3 4 0.023 17 5.6 2.2 6 35 267 302 266 306 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-208 - 380 2.4e-06 27.5 25.7 4 4 1.3e-05 0.0098 16.0 4.6 6 34 322 357 294 364 0.93 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 1 7 4.3e-05 0.032 14.2 0.9 2 26 184 208 184 209 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 2 7 0.062 46 4.2 2.4 2 25 211 234 210 236 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 3 7 0.019 14 5.8 2.8 2 24 239 261 239 264 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 4 7 0.016 12 6.1 2.2 2 24 267 289 267 292 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 5 7 0.0062 4.6 7.4 0.3 6 24 298 316 297 319 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 6 7 0.00013 0.1 12.7 0.3 2 18 322 338 322 345 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-208 - 380 8.4e-06 25.7 50.9 7 7 0.027 20 5.3 1.5 2 26 350 375 350 376 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 1 8 2.2e-05 0.014 15.8 0.8 8 25 124 142 122 143 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 2 8 2.9e-05 0.018 15.4 0.2 1 25 146 169 146 169 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 3 8 1.2e-08 7.8e-06 26.1 0.9 2 25 174 197 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 4 8 6.2e-09 4e-06 27.0 1.2 1 25 201 225 201 226 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 5 8 1.4e-07 9e-05 22.7 2.5 1 25 229 252 229 253 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 6 8 4.7e-08 3e-05 24.2 0.3 1 25 256 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 7 8 1.4e-12 9.1e-10 38.5 0.8 2 25 285 308 284 309 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN25-209 - 328 1.5e-42 142.2 49.2 8 8 0.15 95 3.7 0.1 2 12 313 324 312 327 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 1 7 2.8e-11 1.8e-08 34.4 0.7 1 23 132 154 132 154 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 2 7 9.6e-07 0.00061 20.1 0.4 3 23 161 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 3 7 4.6e-08 2.9e-05 24.3 4.2 1 23 187 209 187 209 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 4 7 4.1e-09 2.7e-06 27.5 3.8 1 23 215 237 215 237 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 5 7 1.1e-06 0.00069 19.9 0.4 5 23 246 264 243 264 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 6 7 8.9e-06 0.0057 17.0 0.4 3 23 272 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN25-209 - 328 1.4e-39 132.4 51.6 7 7 1.7e-06 0.0011 19.3 2.2 1 23 298 321 298 321 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 1 7 9.2e-08 5.9e-05 23.6 0.5 1 23 132 154 132 155 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 2 7 0.00021 0.13 13.1 0.3 2 23 160 181 159 182 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 3 7 0.0099 6.3 7.9 4.4 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 4 7 0.00058 0.37 11.8 3.0 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 5 7 0.00026 0.17 12.8 0.4 2 23 244 264 243 265 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 6 7 2.9e-05 0.019 15.8 0.4 2 23 271 292 270 293 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN25-209 - 328 3.5e-21 74.1 49.2 7 7 4.5e-06 0.0029 18.3 1.6 1 24 298 321 298 321 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 1 7 3.5e-05 0.022 15.0 0.0 2 24 132 154 131 155 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 2 7 0.032 21 5.6 0.1 4 24 161 181 158 182 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 3 7 0.028 18 5.8 1.4 2 24 187 209 186 209 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 4 7 0.029 19 5.7 0.4 2 24 215 237 214 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 5 7 0.52 3.4e+02 1.7 0.1 6 21 246 261 245 262 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 6 7 0.011 7.1 7.0 0.0 4 22 272 290 269 290 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN25-209 - 328 1.9e-09 37.5 22.6 7 7 0.0096 6.2 7.2 0.2 4 23 300 319 297 322 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZSCAN25-209 - 328 1.6e-06 28.1 26.3 1 5 0.00065 0.41 10.8 3.4 6 34 132 166 131 173 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-209 - 328 1.6e-06 28.1 26.3 2 5 0.0075 4.8 7.4 2.3 6 35 187 223 186 227 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-209 - 328 1.6e-06 28.1 26.3 3 5 0.027 18 5.6 2.5 6 36 215 251 214 255 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-209 - 328 1.6e-06 28.1 26.3 4 5 0.0036 2.3 8.4 1.4 6 37 243 280 242 282 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN25-209 - 328 1.6e-06 28.1 26.3 5 5 8.3e-07 0.00053 20.0 0.7 6 34 270 305 269 312 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 1 7 4.1e-05 0.027 14.5 0.9 2 26 132 156 132 157 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 2 7 0.077 49 4.1 2.7 2 25 159 182 158 184 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 3 7 0.019 12 6.0 2.8 2 24 187 209 187 212 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 4 7 0.015 9.7 6.3 2.2 2 24 215 237 215 240 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 5 7 0.006 3.8 7.6 0.3 6 24 246 264 245 267 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 6 7 0.00013 0.084 12.9 0.3 2 19 270 287 270 293 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN25-209 - 328 3e-06 27.1 51.3 7 7 0.026 17 5.6 1.5 2 26 298 323 298 324 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:11 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 1 7 0.00034 0.21 12.1 0.6 8 25 295 319 282 320 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 2 7 7.9e-12 4.7e-09 36.3 1.2 2 25 324 347 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 3 7 1.6e-11 9.5e-09 35.3 0.2 1 25 351 375 351 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 4 7 2.2e-11 1.3e-08 34.9 0.2 2 26 380 404 379 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 5 7 2.3e-09 1.4e-06 28.5 0.2 2 26 408 432 407 432 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 6 7 6.6e-08 3.9e-05 23.9 6.3 1 25 435 459 435 460 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-201 - 485 9e-45 149.2 41.5 7 7 1.3 7.6e+02 0.8 0.2 1 10 463 472 463 474 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 1 7 2.9 1.7e+03 -0.2 0.7 3 13 282 294 280 296 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 2 7 8e-10 4.8e-07 29.9 0.8 2 23 310 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 3 7 1.8e-08 1.1e-05 25.6 1.5 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 4 7 4.5e-10 2.7e-07 30.7 0.6 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 5 7 3e-06 0.0018 18.6 0.9 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 6 7 1.9e-07 0.00011 22.4 2.4 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-201 - 485 2e-34 116.1 51.1 7 7 1e-06 0.0006 20.1 2.8 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 1 7 6.1 3.6e+03 -0.7 1.0 3 13 282 294 280 300 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 2 7 2.4e-06 0.0014 19.3 0.7 2 23 310 331 309 332 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 3 7 3.3e-06 0.002 18.8 1.2 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 4 7 1.4e-06 0.00082 20.0 0.5 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 5 7 5.6e-06 0.0034 18.1 0.6 1 23 393 415 393 416 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 6 7 9.9e-06 0.0059 17.3 1.9 1 23 421 443 421 444 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-201 - 485 1.1e-21 75.6 51.8 7 7 4.6e-05 0.028 15.3 1.8 1 23 449 471 449 472 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 1 6 0.0016 0.93 9.9 0.0 4 22 311 329 310 329 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 2 6 8.8e-05 0.053 13.8 0.1 2 24 337 359 336 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 3 6 0.039 23 5.4 0.2 4 24 367 387 364 387 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 4 6 1.7e-05 0.01 16.1 0.1 4 21 395 412 392 413 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 5 6 2.6e-05 0.015 15.5 1.3 2 24 421 443 420 443 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-201 - 485 1.8e-17 63.1 20.4 6 6 0.00035 0.21 11.9 0.1 2 21 449 468 448 469 0.93 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-201 - 485 1.2e-16 60.9 0.0 1 1 4.7e-19 2.8e-16 59.7 0.0 3 90 43 126 41 126 0.90 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN32-202 - 697 2.9e-44 148.8 5.1 1 1 1.9e-46 1.1e-43 146.9 5.1 1 89 33 121 33 122 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 1 7 0.0018 1 9.9 2.2 8 25 507 531 496 532 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 2 7 1.3e-11 7.2e-09 35.7 1.2 2 25 536 559 535 560 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 3 7 2.5e-11 1.5e-08 34.7 0.2 1 25 563 587 563 588 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 4 7 3.4e-11 2e-08 34.3 0.2 2 26 592 616 591 616 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 5 7 3.7e-09 2.1e-06 27.9 0.2 2 26 620 644 619 644 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 6 7 1e-07 6e-05 23.3 6.3 1 25 647 671 647 672 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-202 - 697 1.3e-42 142.4 44.3 7 7 2 1.1e+03 0.3 0.2 1 10 675 684 675 686 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 1 7 4.4 2.5e+03 -0.7 0.6 3 13 494 506 493 508 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 2 7 1.3e-09 7.3e-07 29.3 0.8 2 23 522 543 521 543 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 3 7 2.8e-08 1.6e-05 25.1 1.5 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 4 7 7.2e-10 4.2e-07 30.1 0.6 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 5 7 4.8e-06 0.0028 18.0 0.9 1 23 605 627 605 627 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 6 7 3e-07 0.00018 21.8 2.4 1 23 633 655 633 655 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-202 - 697 2.9e-33 112.5 50.8 7 7 1.6e-06 0.00093 19.5 2.8 1 23 661 683 661 683 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 1 7 9.6 5.5e+03 -1.2 1.0 3 13 494 506 492 512 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 2 7 3.8e-06 0.0022 18.7 0.7 2 23 522 543 521 544 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 3 7 5.2e-06 0.003 18.2 1.2 1 23 549 571 549 572 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 4 7 2.2e-06 0.0013 19.4 0.5 1 23 577 599 577 600 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 5 7 9e-06 0.0052 17.5 0.6 1 23 605 627 605 628 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 6 7 1.6e-05 0.0091 16.8 1.9 1 23 633 655 633 656 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-202 - 697 2.1e-20 71.6 51.8 7 7 7.4e-05 0.043 14.7 1.8 1 23 661 683 661 684 0.88 C2H2-type zinc finger Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-202 - 697 1.9e-16 60.2 0.0 1 1 8.4e-19 4.9e-16 58.9 0.0 3 90 255 338 253 338 0.90 Myb/SANT-like DNA-binding domain zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 1 6 0.0024 1.4 9.3 0.0 4 22 523 541 522 541 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 2 6 0.00014 0.08 13.3 0.1 2 24 549 571 548 571 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 3 6 0.061 35 4.8 0.2 4 24 579 599 576 599 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 4 6 2.7e-05 0.016 15.5 0.1 4 21 607 624 604 625 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 5 6 4e-05 0.023 15.0 1.3 2 24 633 655 632 655 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-202 - 697 2.4e-16 59.6 20.5 6 6 0.00054 0.31 11.4 0.1 2 21 661 680 660 681 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN32-203 - 697 2.9e-44 148.8 5.1 1 1 1.9e-46 1.1e-43 146.9 5.1 1 89 33 121 33 122 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 1 7 0.0018 1 9.9 2.2 8 25 507 531 496 532 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 2 7 1.3e-11 7.2e-09 35.7 1.2 2 25 536 559 535 560 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 3 7 2.5e-11 1.5e-08 34.7 0.2 1 25 563 587 563 588 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 4 7 3.4e-11 2e-08 34.3 0.2 2 26 592 616 591 616 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 5 7 3.7e-09 2.1e-06 27.9 0.2 2 26 620 644 619 644 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 6 7 1e-07 6e-05 23.3 6.3 1 25 647 671 647 672 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-203 - 697 1.3e-42 142.4 44.3 7 7 2 1.1e+03 0.3 0.2 1 10 675 684 675 686 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 1 7 4.4 2.5e+03 -0.7 0.6 3 13 494 506 493 508 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 2 7 1.3e-09 7.3e-07 29.3 0.8 2 23 522 543 521 543 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 3 7 2.8e-08 1.6e-05 25.1 1.5 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 4 7 7.2e-10 4.2e-07 30.1 0.6 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 5 7 4.8e-06 0.0028 18.0 0.9 1 23 605 627 605 627 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 6 7 3e-07 0.00018 21.8 2.4 1 23 633 655 633 655 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-203 - 697 2.9e-33 112.5 50.8 7 7 1.6e-06 0.00093 19.5 2.8 1 23 661 683 661 683 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 1 7 9.6 5.5e+03 -1.2 1.0 3 13 494 506 492 512 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 2 7 3.8e-06 0.0022 18.7 0.7 2 23 522 543 521 544 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 3 7 5.2e-06 0.003 18.2 1.2 1 23 549 571 549 572 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 4 7 2.2e-06 0.0013 19.4 0.5 1 23 577 599 577 600 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 5 7 9e-06 0.0052 17.5 0.6 1 23 605 627 605 628 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 6 7 1.6e-05 0.0091 16.8 1.9 1 23 633 655 633 656 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-203 - 697 2.1e-20 71.6 51.8 7 7 7.4e-05 0.043 14.7 1.8 1 23 661 683 661 684 0.88 C2H2-type zinc finger Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-203 - 697 1.9e-16 60.2 0.0 1 1 8.4e-19 4.9e-16 58.9 0.0 3 90 255 338 253 338 0.90 Myb/SANT-like DNA-binding domain zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 1 6 0.0024 1.4 9.3 0.0 4 22 523 541 522 541 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 2 6 0.00014 0.08 13.3 0.1 2 24 549 571 548 571 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 3 6 0.061 35 4.8 0.2 4 24 579 599 576 599 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 4 6 2.7e-05 0.016 15.5 0.1 4 21 607 624 604 625 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 5 6 4e-05 0.023 15.0 1.3 2 24 633 655 632 655 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-203 - 697 2.4e-16 59.6 20.5 6 6 0.00054 0.31 11.4 0.1 2 21 661 680 660 681 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-204 - 215 4.4e-17 62.3 0.0 1 1 1e-20 6.2e-17 61.8 0.0 3 90 43 126 41 126 0.90 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 1 7 0.00033 0.2 12.2 0.8 8 25 218 242 207 243 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 2 7 6.4e-12 3.8e-09 36.6 1.2 2 25 247 270 246 271 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 3 7 1.3e-11 7.7e-09 35.6 0.2 1 25 274 298 274 299 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 4 7 1.7e-11 1e-08 35.2 0.2 2 26 303 327 302 327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 5 7 1.9e-09 1.1e-06 28.7 0.2 2 26 331 355 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 6 7 5.3e-08 3.2e-05 24.2 6.3 1 25 358 382 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-205 - 408 3e-45 150.7 42.0 7 7 1 6.3e+02 1.1 0.2 1 10 386 395 386 397 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 1 7 2.4 1.4e+03 0.0 0.7 3 13 205 217 203 219 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 2 7 6.5e-10 3.9e-07 30.2 0.8 2 23 233 254 232 254 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 3 7 1.4e-08 8.6e-06 25.9 1.5 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 4 7 3.7e-10 2.2e-07 31.0 0.6 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 5 7 2.4e-06 0.0015 18.9 0.9 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 6 7 1.6e-07 9.3e-05 22.7 2.4 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-205 - 408 1.3e-33 113.6 55.6 7 7 8.2e-07 0.00049 20.4 2.8 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 1 8 8.2 4.9e+03 -1.1 0.1 5 13 16 24 15 29 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 2 8 5 3e+03 -0.4 1.0 3 13 205 217 203 223 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 3 8 1.9e-06 0.0012 19.6 0.7 2 23 233 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 4 8 2.7e-06 0.0016 19.1 1.2 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 5 8 1.1e-06 0.00067 20.3 0.5 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 6 8 4.6e-06 0.0027 18.4 0.6 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 7 8 8e-06 0.0048 17.6 1.9 1 23 344 366 344 367 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-205 - 408 3e-22 77.4 51.8 8 8 3.7e-05 0.022 15.5 1.8 1 23 372 394 372 395 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 1 6 0.0013 0.76 10.1 0.0 4 22 234 252 233 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 2 6 7.1e-05 0.043 14.1 0.1 2 24 260 282 259 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 3 6 0.032 19 5.7 0.2 4 24 290 310 287 310 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 4 6 1.4e-05 0.0083 16.4 0.1 4 21 318 335 315 336 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 5 6 2.1e-05 0.012 15.8 1.3 2 24 344 366 343 366 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-205 - 408 5.1e-18 64.9 20.4 6 6 0.00028 0.17 12.2 0.1 2 21 372 391 371 392 0.93 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-205 - 408 4.8e-09 36.5 0.0 1 1 2.2e-11 1.3e-08 35.1 0.0 40 90 1 49 1 49 0.94 Myb/SANT-like DNA-binding domain zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 1 6 0.00034 0.21 11.4 0.9 6 26 233 253 230 254 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 2 6 0.011 6.5 6.6 0.3 5 25 260 280 257 282 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 3 6 0.018 11 5.9 0.5 5 21 288 304 285 308 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 4 6 0.014 8.5 6.2 0.3 5 26 316 337 313 338 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 5 6 0.48 2.9e+02 1.3 0.1 3 14 342 353 341 363 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-205 - 408 6e-06 25.9 29.0 6 6 0.00034 0.21 11.4 0.5 5 24 372 391 369 394 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 1 7 0.00024 0.1 13.1 1.1 8 25 26 50 15 51 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 2 7 3.9e-12 1.6e-09 37.7 1.2 2 25 55 78 54 79 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 3 7 7.7e-12 3.3e-09 36.8 0.2 1 25 82 106 82 107 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 4 7 1.1e-11 4.5e-09 36.3 0.2 2 26 111 135 110 135 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 5 7 1.1e-09 4.9e-07 29.9 0.2 2 26 139 163 138 163 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 6 7 3.2e-08 1.4e-05 25.3 6.3 1 25 166 190 166 191 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-206 - 216 3e-47 157.0 43.2 7 7 0.7 3e+02 2.1 0.2 1 10 194 203 194 205 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 1 7 1.7 7.1e+02 1.0 0.8 3 13 13 25 11 27 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 2 7 4e-10 1.7e-07 31.3 0.8 2 23 41 62 40 62 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 3 7 8.8e-09 3.7e-06 27.1 1.5 1 23 68 90 68 90 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 4 7 2.2e-10 9.6e-08 32.1 0.6 1 23 96 118 96 118 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 5 7 1.5e-06 0.00064 20.0 0.9 1 23 124 146 124 146 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 6 7 9.5e-08 4.1e-05 23.8 2.4 1 23 152 174 152 174 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-206 - 216 4.6e-37 124.4 51.7 7 7 5e-07 0.00021 21.5 2.8 1 23 180 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 1 7 3.2 1.4e+03 0.7 1.0 3 13 13 25 11 31 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 2 7 1.2e-06 0.0005 20.7 0.7 2 23 41 62 40 63 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 3 7 1.6e-06 0.00068 20.3 1.2 1 23 68 90 68 91 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 4 7 6.7e-07 0.00029 21.4 0.5 1 23 96 118 96 119 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 5 7 2.8e-06 0.0012 19.5 0.6 1 23 124 146 124 147 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 6 7 4.8e-06 0.0021 18.8 1.9 1 23 152 174 152 175 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-206 - 216 3e-25 86.7 48.5 7 7 2.3e-05 0.0097 16.7 1.8 1 23 180 202 180 203 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 1 6 0.0008 0.34 11.2 0.0 4 22 42 60 41 60 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 2 6 4.4e-05 0.019 15.3 0.1 2 24 68 90 67 90 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 3 6 0.02 8.4 6.8 0.2 4 24 98 118 95 118 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 4 6 8.7e-06 0.0037 17.5 0.1 4 21 126 143 123 144 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 5 6 1.3e-05 0.0055 17.0 1.3 2 24 152 174 151 174 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-206 - 216 1.3e-18 66.7 24.9 6 6 0.00018 0.075 13.3 0.1 2 21 180 199 179 200 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 1 6 0.00021 0.091 12.5 0.9 6 26 41 61 38 62 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 2 6 0.0068 2.9 7.7 0.3 5 25 68 88 65 90 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 3 6 0.011 4.9 7.0 0.5 5 21 96 112 93 116 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 4 6 0.0089 3.8 7.4 0.3 5 26 124 145 121 146 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 5 6 0.26 1.1e+02 2.7 0.1 3 14 150 161 148 172 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-206 - 216 7.4e-08 32.0 29.1 6 6 0.00021 0.091 12.5 0.5 5 24 180 199 177 202 0.91 zinc-finger C2H2-type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 1 6 0.019 8 7.0 0.3 2 21 41 60 40 63 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 2 6 0.049 21 5.7 0.7 2 22 69 89 68 91 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 3 6 0.098 42 4.7 1.0 1 21 96 116 96 119 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 4 6 4.2e-05 0.018 15.4 0.7 1 20 124 143 124 147 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 5 6 5.1e-05 0.022 15.2 1.9 1 19 152 170 152 175 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN32-206 - 216 1.4e-07 31.7 35.9 6 6 0.028 12 6.4 0.4 1 19 180 198 180 200 0.92 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 1 6 0.0036 1.5 8.9 0.6 4 12 42 50 41 52 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 2 6 2.9e-06 0.0012 18.8 2.2 2 24 68 90 68 93 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 3 6 0.00043 0.18 11.8 1.1 2 24 96 118 96 121 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 4 6 0.02 8.5 6.5 0.3 2 12 124 134 124 135 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 5 6 0.41 1.8e+02 2.3 5.1 2 12 152 162 152 177 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN32-206 - 216 2.2e-07 30.7 45.6 6 6 0.021 8.9 6.4 2.1 2 26 180 204 180 205 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 1 6 0.0075 3.2 7.9 1.9 25 38 37 51 12 53 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 2 6 0.00011 0.049 13.8 3.8 7 34 41 75 39 81 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 3 6 5.6e-05 0.024 14.7 1.3 6 35 96 132 95 135 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 4 6 0.038 16 5.7 0.1 6 21 124 139 122 147 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 5 6 0.00097 0.41 10.8 3.4 6 34 152 187 151 192 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN32-206 - 216 6.7e-07 29.3 26.9 6 6 0.038 16 5.7 0.4 6 18 180 192 179 202 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 1 6 0.0013 0.57 10.3 0.1 3 17 41 55 39 58 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 2 6 0.012 5 7.3 0.2 2 12 68 78 67 83 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 3 6 0.056 24 5.1 0.3 3 14 97 108 95 109 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 4 6 0.066 28 4.9 0.1 3 14 125 136 123 139 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 5 6 0.039 17 5.6 0.1 3 14 153 164 151 169 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN32-206 - 216 1.5e-06 28.1 16.3 6 6 0.55 2.3e+02 1.9 0.0 3 12 181 190 179 198 0.84 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:13 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-210 - 138 1.5e-09 38.1 0.0 1 1 1.2e-13 2.1e-09 37.7 0.0 40 90 1 49 1 49 0.94 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-211 - 138 1.5e-09 38.1 0.0 1 1 1.2e-13 2.1e-09 37.7 0.0 40 90 1 49 1 49 0.94 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN32-212 - 427 5.3e-44 148.0 5.1 1 2 1.8e-47 5.3e-44 148.0 5.1 1 89 33 121 33 122 0.97 SCAN domain SCAN PF02023.17 90 ZSCAN32-212 - 427 5.3e-44 148.0 5.1 2 2 0.9 2.7e+03 -1.7 0.0 3 14 305 316 303 345 0.51 SCAN domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-212 - 427 1.2e-16 60.9 0.0 1 1 7.7e-20 2.3e-16 59.9 0.0 3 90 255 338 253 338 0.90 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 1 7 0.00033 0.2 12.2 0.8 8 25 218 242 207 243 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 2 7 6.4e-12 3.8e-09 36.6 1.2 2 25 247 270 246 271 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 3 7 1.3e-11 7.7e-09 35.6 0.2 1 25 274 298 274 299 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 4 7 1.7e-11 1e-08 35.2 0.2 2 26 303 327 302 327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 5 7 1.9e-09 1.1e-06 28.7 0.2 2 26 331 355 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 6 7 5.3e-08 3.2e-05 24.2 6.3 1 25 358 382 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-214 - 408 3e-45 150.7 42.0 7 7 1 6.3e+02 1.1 0.2 1 10 386 395 386 397 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 1 7 2.4 1.4e+03 0.0 0.7 3 13 205 217 203 219 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 2 7 6.5e-10 3.9e-07 30.2 0.8 2 23 233 254 232 254 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 3 7 1.4e-08 8.6e-06 25.9 1.5 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 4 7 3.7e-10 2.2e-07 31.0 0.6 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 5 7 2.4e-06 0.0015 18.9 0.9 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 6 7 1.6e-07 9.3e-05 22.7 2.4 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-214 - 408 1.3e-33 113.6 55.6 7 7 8.2e-07 0.00049 20.4 2.8 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 1 8 8.2 4.9e+03 -1.1 0.1 5 13 16 24 15 29 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 2 8 5 3e+03 -0.4 1.0 3 13 205 217 203 223 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 3 8 1.9e-06 0.0012 19.6 0.7 2 23 233 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 4 8 2.7e-06 0.0016 19.1 1.2 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 5 8 1.1e-06 0.00067 20.3 0.5 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 6 8 4.6e-06 0.0027 18.4 0.6 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 7 8 8e-06 0.0048 17.6 1.9 1 23 344 366 344 367 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-214 - 408 3e-22 77.4 51.8 8 8 3.7e-05 0.022 15.5 1.8 1 23 372 394 372 395 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 1 6 0.0013 0.76 10.1 0.0 4 22 234 252 233 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 2 6 7.1e-05 0.043 14.1 0.1 2 24 260 282 259 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 3 6 0.032 19 5.7 0.2 4 24 290 310 287 310 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 4 6 1.4e-05 0.0083 16.4 0.1 4 21 318 335 315 336 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 5 6 2.1e-05 0.012 15.8 1.3 2 24 344 366 343 366 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-214 - 408 5.1e-18 64.9 20.4 6 6 0.00028 0.17 12.2 0.1 2 21 372 391 371 392 0.93 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-214 - 408 4.8e-09 36.5 0.0 1 1 2.2e-11 1.3e-08 35.1 0.0 40 90 1 49 1 49 0.94 Myb/SANT-like DNA-binding domain zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 1 6 0.00034 0.21 11.4 0.9 6 26 233 253 230 254 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 2 6 0.011 6.5 6.6 0.3 5 25 260 280 257 282 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 3 6 0.018 11 5.9 0.5 5 21 288 304 285 308 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 4 6 0.014 8.5 6.2 0.3 5 26 316 337 313 338 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 5 6 0.48 2.9e+02 1.3 0.1 3 14 342 353 341 363 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-214 - 408 6e-06 25.9 29.0 6 6 0.00034 0.21 11.4 0.5 5 24 372 391 369 394 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 1 7 0.00033 0.2 12.2 0.8 8 25 218 242 207 243 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 2 7 6.4e-12 3.8e-09 36.6 1.2 2 25 247 270 246 271 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 3 7 1.3e-11 7.7e-09 35.6 0.2 1 25 274 298 274 299 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 4 7 1.7e-11 1e-08 35.2 0.2 2 26 303 327 302 327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 5 7 1.9e-09 1.1e-06 28.7 0.2 2 26 331 355 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 6 7 5.3e-08 3.2e-05 24.2 6.3 1 25 358 382 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN32-215 - 408 3e-45 150.7 42.0 7 7 1 6.3e+02 1.1 0.2 1 10 386 395 386 397 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 1 7 2.4 1.4e+03 0.0 0.7 3 13 205 217 203 219 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 2 7 6.5e-10 3.9e-07 30.2 0.8 2 23 233 254 232 254 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 3 7 1.4e-08 8.6e-06 25.9 1.5 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 4 7 3.7e-10 2.2e-07 31.0 0.6 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 5 7 2.4e-06 0.0015 18.9 0.9 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 6 7 1.6e-07 9.3e-05 22.7 2.4 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN32-215 - 408 1.3e-33 113.6 55.6 7 7 8.2e-07 0.00049 20.4 2.8 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 1 8 8.2 4.9e+03 -1.1 0.1 5 13 16 24 15 29 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 2 8 5 3e+03 -0.4 1.0 3 13 205 217 203 223 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 3 8 1.9e-06 0.0012 19.6 0.7 2 23 233 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 4 8 2.7e-06 0.0016 19.1 1.2 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 5 8 1.1e-06 0.00067 20.3 0.5 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 6 8 4.6e-06 0.0027 18.4 0.6 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 7 8 8e-06 0.0048 17.6 1.9 1 23 344 366 344 367 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN32-215 - 408 3e-22 77.4 51.8 8 8 3.7e-05 0.022 15.5 1.8 1 23 372 394 372 395 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 1 6 0.0013 0.76 10.1 0.0 4 22 234 252 233 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 2 6 7.1e-05 0.043 14.1 0.1 2 24 260 282 259 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 3 6 0.032 19 5.7 0.2 4 24 290 310 287 310 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 4 6 1.4e-05 0.0083 16.4 0.1 4 21 318 335 315 336 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 5 6 2.1e-05 0.012 15.8 1.3 2 24 344 366 343 366 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN32-215 - 408 5.1e-18 64.9 20.4 6 6 0.00028 0.17 12.2 0.1 2 21 372 391 371 392 0.93 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 90 ZSCAN32-215 - 408 4.8e-09 36.5 0.0 1 1 2.2e-11 1.3e-08 35.1 0.0 40 90 1 49 1 49 0.94 Myb/SANT-like DNA-binding domain zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 1 6 0.00034 0.21 11.4 0.9 6 26 233 253 230 254 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 2 6 0.011 6.5 6.6 0.3 5 25 260 280 257 282 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 3 6 0.018 11 5.9 0.5 5 21 288 304 285 308 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 4 6 0.014 8.5 6.2 0.3 5 26 316 337 313 338 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 5 6 0.48 2.9e+02 1.3 0.1 3 14 342 353 341 363 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN32-215 - 408 6e-06 25.9 29.0 6 6 0.00034 0.21 11.4 0.5 5 24 372 391 369 394 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN9-201 - 394 8.6e-41 137.7 2.2 1 2 8.1e-44 8.6e-41 137.7 2.2 2 89 49 136 48 137 0.98 SCAN domain SCAN PF02023.17 90 ZSCAN9-201 - 394 8.6e-41 137.7 2.2 2 2 7.6 8e+03 -3.3 0.0 68 83 147 162 142 168 0.72 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 1 7 9.3 9.8e+03 -2.7 0.2 2 7 51 56 51 57 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 2 7 0.00015 0.16 12.5 0.0 11 25 250 264 236 265 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 3 7 3.6e-12 3.8e-09 36.5 0.1 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 4 7 2.1e-06 0.0022 18.3 0.9 2 25 297 320 296 321 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 5 7 9.5e-11 1e-07 32.1 0.3 2 25 325 348 324 349 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 6 7 1.1e-10 1.2e-07 31.8 0.4 4 25 355 376 353 377 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-201 - 394 9.2e-34 114.4 32.8 7 7 0.051 54 4.5 0.1 1 11 380 390 380 391 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN9-201 - 394 1e-27 95.0 37.2 1 5 1.1e-09 1.1e-06 28.7 1.3 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-201 - 394 1e-27 95.0 37.2 2 5 6e-08 6.3e-05 23.2 0.2 1 23 282 304 282 304 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-201 - 394 1e-27 95.0 37.2 3 5 2e-08 2.2e-05 24.7 0.6 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-201 - 394 1e-27 95.0 37.2 4 5 2.1e-07 0.00022 21.5 2.8 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-201 - 394 1e-27 95.0 37.2 5 5 1.1e-05 0.011 16.1 5.7 1 23 366 388 366 388 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN9-201 - 394 1.3e-16 59.9 38.2 1 5 1.9e-06 0.002 18.8 0.9 1 23 254 276 254 277 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-201 - 394 1.3e-16 59.9 38.2 2 5 2.1e-05 0.022 15.6 0.2 1 23 282 304 282 305 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-201 - 394 1.3e-16 59.9 38.2 3 5 3.9e-06 0.0041 17.8 0.9 1 23 310 332 310 333 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-201 - 394 1.3e-16 59.9 38.2 4 5 2e-05 0.021 15.7 2.2 1 23 338 360 338 361 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-201 - 394 1.3e-16 59.9 38.2 5 5 8e-05 0.085 13.7 4.5 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-201 - 394 1.9e-09 37.3 36.6 1 5 3e-05 0.031 14.3 0.6 2 13 254 265 253 277 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-201 - 394 1.9e-09 37.3 36.6 2 5 8.4e-05 0.089 12.8 0.6 2 21 282 301 282 304 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-201 - 394 1.9e-09 37.3 36.6 3 5 0.00013 0.14 12.2 1.3 2 25 310 333 309 335 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-201 - 394 1.9e-09 37.3 36.6 4 5 0.00022 0.23 11.5 2.5 2 24 338 360 338 363 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-201 - 394 1.9e-09 37.3 36.6 5 5 0.0059 6.2 6.9 3.8 2 23 366 387 366 389 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN9-202 - 445 1.1e-40 137.4 2.2 1 1 1e-43 1.1e-40 137.4 2.2 2 89 49 136 48 137 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 1 6 0.00017 0.18 12.3 0.0 11 25 301 315 287 316 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 2 6 4.2e-12 4.5e-09 36.3 0.1 2 25 320 343 319 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 3 6 2.4e-06 0.0025 18.1 0.9 2 25 348 371 347 372 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 4 6 1.1e-10 1.2e-07 31.9 0.3 2 25 376 399 375 400 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 5 6 1.3e-10 1.4e-07 31.6 0.4 4 25 406 427 404 428 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-202 - 445 2.9e-33 112.8 33.0 6 6 0.058 62 4.3 0.1 1 11 431 441 431 442 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN9-202 - 445 2.3e-27 93.9 37.2 1 5 1.2e-09 1.3e-06 28.5 1.3 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-202 - 445 2.3e-27 93.9 37.2 2 5 7e-08 7.4e-05 23.0 0.2 1 23 333 355 333 355 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-202 - 445 2.3e-27 93.9 37.2 3 5 2.4e-08 2.5e-05 24.5 0.6 1 23 361 383 361 383 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-202 - 445 2.3e-27 93.9 37.2 4 5 2.4e-07 0.00025 21.3 2.8 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-202 - 445 2.3e-27 93.9 37.2 5 5 1.3e-05 0.013 15.9 5.7 1 23 417 439 417 439 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN9-202 - 445 2.3e-16 59.1 37.9 1 5 2.2e-06 0.0023 18.6 0.9 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-202 - 445 2.3e-16 59.1 37.9 2 5 2.4e-05 0.026 15.4 0.2 1 23 333 355 333 356 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-202 - 445 2.3e-16 59.1 37.9 3 5 4.6e-06 0.0048 17.6 0.9 1 23 361 383 361 384 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-202 - 445 2.3e-16 59.1 37.9 4 5 2.3e-05 0.024 15.4 2.2 1 23 389 411 389 412 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-202 - 445 2.3e-16 59.1 37.9 5 5 9.4e-05 0.099 13.5 4.5 1 23 417 439 417 440 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-202 - 445 3.7e-09 36.3 36.6 1 5 3.4e-05 0.036 14.1 0.6 2 13 305 316 304 328 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-202 - 445 3.7e-09 36.3 36.6 2 5 9.7e-05 0.1 12.6 0.6 2 21 333 352 333 355 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-202 - 445 3.7e-09 36.3 36.6 3 5 0.00015 0.16 12.0 1.3 2 25 361 384 360 386 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-202 - 445 3.7e-09 36.3 36.6 4 5 0.00025 0.27 11.3 2.5 2 24 389 411 389 414 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-202 - 445 3.7e-09 36.3 36.6 5 5 0.0068 7.2 6.7 3.8 2 23 417 438 417 440 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN9-202 - 445 4.9e-06 26.6 20.7 1 5 5.6 5.9e+03 -2.5 0.0 28 35 115 122 111 124 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-202 - 445 4.9e-06 26.6 20.7 2 5 2.3e-05 0.024 14.7 2.6 7 38 306 344 304 345 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-202 - 445 4.9e-06 26.6 20.7 3 5 1.4e-06 0.0014 18.7 1.8 6 38 361 400 360 403 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-202 - 445 4.9e-06 26.6 20.7 4 5 0.0088 9.3 6.5 4.7 6 38 389 428 388 430 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-202 - 445 4.9e-06 26.6 20.7 5 5 0.26 2.8e+02 1.7 0.5 7 17 418 428 416 438 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN9-204 - 261 3.9e-41 138.8 2.2 1 2 2.2e-45 3.9e-41 138.8 2.2 2 89 49 136 48 137 0.98 SCAN domain SCAN PF02023.17 90 ZSCAN9-204 - 261 3.9e-41 138.8 2.2 2 2 0.21 3.8e+03 -2.2 0.1 67 84 146 163 141 169 0.71 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN9-207 - 394 8.6e-41 137.7 2.2 1 2 8.1e-44 8.6e-41 137.7 2.2 2 89 49 136 48 137 0.98 SCAN domain SCAN PF02023.17 90 ZSCAN9-207 - 394 8.6e-41 137.7 2.2 2 2 7.6 8e+03 -3.3 0.0 68 83 147 162 142 168 0.72 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 1 7 9.3 9.8e+03 -2.7 0.2 2 7 51 56 51 57 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 2 7 0.00015 0.16 12.5 0.0 11 25 250 264 236 265 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 3 7 3.6e-12 3.8e-09 36.5 0.1 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 4 7 2.1e-06 0.0022 18.3 0.9 2 25 297 320 296 321 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 5 7 9.5e-11 1e-07 32.1 0.3 2 25 325 348 324 349 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 6 7 1.1e-10 1.2e-07 31.8 0.4 4 25 355 376 353 377 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-207 - 394 9.2e-34 114.4 32.8 7 7 0.051 54 4.5 0.1 1 11 380 390 380 391 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN9-207 - 394 1e-27 95.0 37.2 1 5 1.1e-09 1.1e-06 28.7 1.3 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-207 - 394 1e-27 95.0 37.2 2 5 6e-08 6.3e-05 23.2 0.2 1 23 282 304 282 304 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-207 - 394 1e-27 95.0 37.2 3 5 2e-08 2.2e-05 24.7 0.6 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-207 - 394 1e-27 95.0 37.2 4 5 2.1e-07 0.00022 21.5 2.8 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-207 - 394 1e-27 95.0 37.2 5 5 1.1e-05 0.011 16.1 5.7 1 23 366 388 366 388 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN9-207 - 394 1.3e-16 59.9 38.2 1 5 1.9e-06 0.002 18.8 0.9 1 23 254 276 254 277 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-207 - 394 1.3e-16 59.9 38.2 2 5 2.1e-05 0.022 15.6 0.2 1 23 282 304 282 305 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-207 - 394 1.3e-16 59.9 38.2 3 5 3.9e-06 0.0041 17.8 0.9 1 23 310 332 310 333 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-207 - 394 1.3e-16 59.9 38.2 4 5 2e-05 0.021 15.7 2.2 1 23 338 360 338 361 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-207 - 394 1.3e-16 59.9 38.2 5 5 8e-05 0.085 13.7 4.5 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-207 - 394 1.9e-09 37.3 36.6 1 5 3e-05 0.031 14.3 0.6 2 13 254 265 253 277 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-207 - 394 1.9e-09 37.3 36.6 2 5 8.4e-05 0.089 12.8 0.6 2 21 282 301 282 304 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-207 - 394 1.9e-09 37.3 36.6 3 5 0.00013 0.14 12.2 1.3 2 25 310 333 309 335 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-207 - 394 1.9e-09 37.3 36.6 4 5 0.00022 0.23 11.5 2.5 2 24 338 360 338 363 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-207 - 394 1.9e-09 37.3 36.6 5 5 0.0059 6.2 6.9 3.8 2 23 366 387 366 389 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN9-208 - 160 8.4e-42 140.9 2.2 1 1 6.8e-46 1.2e-41 140.4 2.2 2 89 49 136 48 137 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 1 6 9.9e-05 0.054 13.9 0.0 11 26 35 50 20 50 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 2 6 2.4e-12 1.3e-09 38.0 0.1 2 25 54 77 53 78 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 3 6 1.4e-06 0.00076 19.8 0.9 2 25 82 105 81 106 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 4 6 6.4e-11 3.5e-08 33.5 0.3 2 25 110 133 109 134 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 5 6 7.6e-11 4.1e-08 33.3 0.4 4 26 140 162 138 162 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN9-209 - 179 3.2e-39 131.6 22.2 6 6 0.039 21 5.8 0.1 1 11 165 175 165 176 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN9-209 - 179 1.3e-29 100.9 37.2 1 5 7.2e-10 3.9e-07 30.2 1.3 1 23 39 61 39 61 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-209 - 179 1.3e-29 100.9 37.2 2 5 4.1e-08 2.2e-05 24.6 0.2 1 23 67 89 67 89 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-209 - 179 1.3e-29 100.9 37.2 3 5 1.4e-08 7.5e-06 26.1 0.6 1 23 95 117 95 117 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-209 - 179 1.3e-29 100.9 37.2 4 5 1.4e-07 7.6e-05 23.0 2.8 1 23 123 145 123 145 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN9-209 - 179 1.3e-29 100.9 37.2 5 5 7.4e-06 0.004 17.5 5.8 1 23 151 173 151 173 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN9-209 - 179 2.1e-19 68.5 35.1 1 5 1.2e-06 0.00067 20.3 0.9 1 23 39 61 39 62 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-209 - 179 2.1e-19 68.5 35.1 2 5 1.4e-05 0.0077 17.0 0.2 1 23 67 89 67 90 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-209 - 179 2.1e-19 68.5 35.1 3 5 2.6e-06 0.0014 19.3 0.9 1 23 95 117 95 118 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-209 - 179 2.1e-19 68.5 35.1 4 5 1.3e-05 0.0071 17.1 2.2 1 23 123 145 123 146 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN9-209 - 179 2.1e-19 68.5 35.1 5 5 5.4e-05 0.029 15.2 4.5 1 23 151 173 151 174 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-209 - 179 1.6e-11 43.9 36.8 1 5 2.2e-05 0.012 15.6 0.6 2 13 39 50 38 62 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-209 - 179 1.6e-11 43.9 36.8 2 5 6e-05 0.032 14.2 0.6 2 21 67 86 67 89 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-209 - 179 1.6e-11 43.9 36.8 3 5 9e-05 0.049 13.6 1.4 2 25 95 118 94 120 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-209 - 179 1.6e-11 43.9 36.8 4 5 0.00015 0.081 13.0 2.5 2 24 123 145 123 148 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN9-209 - 179 1.6e-11 43.9 36.8 5 5 0.0042 2.3 8.3 3.8 2 23 151 172 151 174 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN9-209 - 179 1.7e-07 31.2 19.9 1 4 2.3e-05 0.012 15.7 3.5 7 38 40 78 38 79 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-209 - 179 1.7e-07 31.2 19.9 2 4 6e-07 0.00032 20.7 1.6 6 38 95 134 94 137 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-209 - 179 1.7e-07 31.2 19.9 3 4 0.0053 2.9 8.1 4.9 6 38 123 162 122 164 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN9-209 - 179 1.7e-07 31.2 19.9 4 4 0.082 45 4.3 0.8 28 37 151 161 138 173 0.63 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN9-209 - 179 4.2e-06 26.7 20.6 1 5 0.00032 0.17 11.9 1.3 2 14 39 51 38 52 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN9-209 - 179 4.2e-06 26.7 20.6 2 5 0.0015 0.84 9.7 0.1 3 14 68 79 66 85 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN9-209 - 179 4.2e-06 26.7 20.6 3 5 0.0029 1.6 8.9 0.2 3 14 96 107 94 108 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN9-209 - 179 4.2e-06 26.7 20.6 4 5 0.89 4.8e+02 0.9 0.2 3 11 124 132 122 141 0.69 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN9-209 - 179 4.2e-06 26.7 20.6 5 5 0.01 5.5 7.1 0.2 3 11 152 160 150 162 0.86 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:45 2024 # [ok]