In [1]:
# Parameters
data_name = "Sry"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:39:06,820 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sry: Motif: M09408_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sry: #3

Cell typeModiscoHomer
ES;E14;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00709024

Pattern: motif7.motif

Significance: 0.00910935

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0409659

Pattern: motif9.motif

Significance: 0.000845156

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0569535

/

Pattern: metacluster_1/pattern_5

Significance: 0.0232224

Pattern: motif7.motif

Significance: 0.0183668

Unique Cell types only TF-MoDISco finds Sry: #36

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.026002800000000003

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0483654

/

Pattern: metacluster_0/pattern_12

Significance: 0.0181685

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0512701

/

Pattern: metacluster_0/pattern_13

Significance: 0.0323387

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0453795

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0280735

/

Pattern: metacluster_0/pattern_13

Significance: 0.0337001

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0147762

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0474652

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0485926

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.0281541

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.050958300000000005

/

Pattern: metacluster_0/pattern_10

Significance: 0.035203899999999996

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.034787900000000004

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00581892

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.037396

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.04716819999999999

/

Pattern: metacluster_1/pattern_22

Significance: 0.04721090000000001

/

Pattern: metacluster_1/pattern_24

Significance: 0.0199273

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.030577099999999996

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.00768831

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.029354599999999998

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0153025

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00555867

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.015432900000000001

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.055851099999999994

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.05895369999999999

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00655831

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0316719

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0430166

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00833404

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.018915400000000002

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.044213199999999994

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0572765

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.007537899999999999

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0247111

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0314085

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0524472

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0584562

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.014141200000000001

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0574427

Absent
Unique Cell types only Homer finds Sry: #1

Cell typeModiscoHomer
NPC;F129;A;GEOAbsent

Pattern: motif14.motif

Significance: 0.0596447