# Parameters
data_name = "Neurod1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Neurod1: #34
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.048494699999999995 |
Significance: 0.00022312299999999998 |
| wES;limb;E11.5;D;En |
Significance: 0.00659028 |
Significance: 0.0528342 |
| wES;FaceP;E14.5;D;En |
Significance: 0.044669099999999996 |
Significance: 0.00149561 |
| wES;FaceP;E11.5;D;En |
Significance: 0.044349400000000004 |
Significance: 0.0531342 |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.000121817 |
Significance: 0.0443791 |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.0193255 |
Significance: 0.018200099999999997 |
| preB_BMD;A;GEO |
Significance: 0.026689299999999996 |
Significance: 0.028002199999999998 |
| B;B220_CD43;A;GEO |
Significance: 0.0530101 |
Significance: 0.00215871 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00208927 |
Significance: 0.0353035 |
| NPC;F129;A;GEO |
Significance: 0.019671 |
Significance: 0.031742900000000004 |
| NPC;G4;A;GEO |
Significance: 0.0364047 |
Significance: 0.0209137 |
| NPC;mE6;A;GEO |
Significance: 0.0459211 |
Significance: 0.028139599999999997 |
| ePyramidal_NRN;A;GEO |
Significance: 4.31842e-07 |
Significance: 0.00878299 |
| eCortical_NRN;A;GEO |
Significance: 2.1001500000000002e-05 |
Significance: 1.87844e-05 |
| Muscle;A;CL |
Significance: 0.0325253 |
Significance: 0.05663680000000001 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 3.30018e-05 |
Significance: 0.000582149 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 3.8413e-05 |
Significance: 1.0123200000000002e-06 |
| BRN;CRBLM;A;CL |
Significance: 6.464590000000001e-06 |
Significance: 0.000771377 |
| WHL_BRN;8wks;D;GEO |
Significance: 2.37498e-06 |
Significance: 0.00830506 |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 1.79163e-06 |
Significance: 0.00165175 |
| LNG;P0;D;En |
Significance: 0.0557067 |
Significance: 0.0155107 |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 9.21774e-07 |
Significance: 1.8193599999999998e-05 |
| RTN;D1;D;En |
Significance: 3.60957e-05 |
Significance: 0.00895866 |
| wES;RTN;E11.5;D;En |
Significance: 2.01254e-05 |
Significance: 0.00460232 |
| CRBLM;D;En |
Significance: 1.13649e-06 |
Significance: 0.00871669 |
| wES;MSDRM;E11.5;D;En |
Significance: 4.69169e-05 |
Significance: 0.00242625 |
| wES.Fr_BRN;E14.4;D;En |
Significance: 2.2102400000000003e-08 |
Significance: 3.31907e-07 |
| Fr_BRN;P0;D;En |
Significance: 0.000119482 |
Significance: 1.73947e-06 |
| Hnd_BRN;P0;D;En |
Significance: 2.29119e-05 |
Significance: 0.00722436 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.00209383 |
Significance: 0.013011400000000001 |
| Md_BRN;D;En |
Significance: 1.0862100000000001e-06 |
Significance: 0.00299256 |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.0392415 |
Significance: 0.00529895 |
| WHL_BRN;8wks;D;En |
Significance: 1.0155500000000002e-06 |
Significance: 3.28456e-05 |
| wES;Telenchephalon;D;En |
Significance: 5.28839e-06 |
Significance: 0.0552227 |
Unique Cell types only TF-MoDISco finds Neurod1: #33
| Cell type | Modisco | Homer |
|---|---|---|
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.0171961 | Absent |
| proB;A;CL |
Significance: 0.0249628 | Absent |
| preB;A;CL |
Significance: 0.044007599999999994 | Absent |
| B1_B;A;CL |
Significance: 0.057993499999999996 | Absent |
| plasmaB;A;CL |
Significance: 0.027722399999999998 | Absent |
| MN1;D;En |
Significance: 0.0019285 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 1.8585699999999999e-06 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 2.4659999999999998e-06 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 8.75215e-07 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0103759 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00872759 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.0008176419999999999 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.00705909 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0452741 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.000461543 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 5.9100699999999995e-05 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.00146082 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00013022 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000981448 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0553877 | Absent |
| G_NRN_P;A;GEO |
Significance: 1.3509399999999999e-06 | Absent |
| Corticotrope;A;GEO |
Significance: 0.019224 | Absent |
| LNG;A;CL |
Significance: 0.0201228 | Absent |
| Heart;D;En |
Significance: 0.0102324 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.037097000000000005 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.0503027 | Absent |
| KDNY;P0;D;En |
Significance: 0.058551099999999995 | Absent |
| LNG;8wks;D;En |
Significance: 0.0338861 | Absent |
| Heart;8wks;D;En |
Significance: 0.0175846 | Absent |
| RTN;A;GEO |
Significance: 8.63439e-08 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.000552596 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.05210599999999999 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.00678827 | Absent |
Unique Cell types only Homer finds Neurod1: #4
| Cell type | Modisco | Homer |
|---|---|---|
| KDNY;8wks;D;En | Absent |
Significance: 0.050917000000000004 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0224112 |
| wES;LNG;E14.5;D;En | Absent |
Significance: 0.037575300000000006 |
| DP3a;A;CL | Absent |
Significance: 0.0477485 |
