In [1]:
# Parameters
data_name = "Myod1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:21:27,376 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Myod1: Motif: M08060_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Myod1: #25

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.044669099999999996

Pattern: motif5.motif

Significance: 0.0161512

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00195063

Pattern: motif12.motif

Significance: 0.056480899999999994

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00507416

Pattern: motif15.motif

Significance: 0.0443791

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0037833

Pattern: motif10.motif

Significance: 0.00409033

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.00784307

Pattern: motif22.motif

Significance: 0.0409791

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.000531907

Pattern: motif9.motif

Significance: 0.031143999999999998

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.000206667

Pattern: motif9.motif

Significance: 0.00236045

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00034625300000000003

Pattern: motif11.motif

Significance: 0.016387400000000003

largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00766891

Pattern: motif18.motif

Significance: 0.0588486

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.013636500000000001

Pattern: motif13.motif

Significance: 0.0226192

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0102762

Pattern: motif10.motif

Significance: 0.0159364

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00724151

Pattern: motif9.motif

Significance: 0.000668263

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00531142

Pattern: motif13.motif

Significance: 0.00599209

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00230502

Pattern: motif11.motif

Significance: 0.0122527

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.013592600000000002

Pattern: motif17.motif

Significance: 0.0474719

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00122667

Pattern: motif14.motif

Significance: 0.028808999999999998

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0326712

Pattern: motif5.motif

Significance: 0.0338071

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00276755

Pattern: motif19.motif

Significance: 0.013110499999999999

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0140188

Pattern: motif13.motif

Significance: 0.020553000000000002

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.00257141

Pattern: motif2.motif

Significance: 0.0463301

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.011879700000000002

Pattern: motif2.motif

Significance: 0.00413049

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.010034600000000001

Pattern: motif16.motif

Significance: 0.0207705

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0199978

Pattern: motif4.motif

Significance: 0.0126304

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0122896

Pattern: motif8.motif

Significance: 0.0551831

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00705819

Pattern: motif19.motif

Significance: 0.05435449999999999

Unique Cell types only TF-MoDISco finds Myod1: #30

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.017281

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0480704

Absent
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.000629704

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000162349

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00889652

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 9.16633e-05

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00363478

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0548636

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0125244

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00154545

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00187328

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0118522

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0065233

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0505649

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.013581799999999998

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.00452775

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00143253

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00166579

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.00525148

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0184877

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00298954

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0456545

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0308975

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.011332799999999999

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00373341

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00497956

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00271038

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00548342

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00316081

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0168335

Absent
Unique Cell types only Homer finds Myod1: #5

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.011240700000000001

LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.057786800000000006

wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.021510400000000002

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.026331099999999996

KDNY;P0;D;EnAbsent

Pattern: motif15.motif

Significance: 0.04546409999999999