Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Mz_300_S2_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4410
Total background sequences = 20957
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-220	-5.075e+02	22.97%	7.59%	292.1bp (222.5bp)	REB1(MacIsaac)/Yeast(0.994) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-111	-2.566e+02	30.56%	16.80%	332.2bp (248.7bp)	RSC3/MA0374.1/Jaspar(0.880) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-64	-1.494e+02	49.81%	37.17%	347.0bp (198.9bp)	PB0192.1_Tcfap2e_2/Jaspar(0.892) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-50	-1.173e+02	37.02%	26.63%	329.7bp (205.6bp)	TATA-box/SacCer-Promoters/Homer(0.891) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-46	-1.064e+02	8.46%	3.71%	274.4bp (219.8bp)	TYE7(MacIsaac)/Yeast(0.997) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-40	-9.321e+01	19.50%	12.38%	357.9bp (211.9bp)	PDR1/MA0352.1/Jaspar(0.878) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-34	-8.050e+01	21.81%	14.79%	340.9bp (193.0bp)	GAGA-repeat/Arabidopsis-Promoters/Homer(0.763) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-34	-7.968e+01	11.92%	6.78%	345.0bp (204.4bp)	TOD6?/SacCer-Promoters/Homer(0.919) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-32	-7.568e+01	5.96%	2.60%	276.2bp (195.1bp)	OPI1/Literature(Harbison)/Yeast(0.899) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-31	-7.189e+01	11.11%	6.38%	324.9bp (195.5bp)	RAP1/MA0359.1/Jaspar(0.875) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-27	-6.301e+01	22.85%	16.46%	301.7bp (208.9bp)	Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer(0.744) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-24	-5.643e+01	8.71%	4.99%	319.9bp (213.5bp)	MSN4(MacIsaac)/Yeast(0.877) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-18	-4.230e+01	4.96%	2.58%	294.7bp (223.9bp)	ERF105/MA1000.1/Jaspar(0.814) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-16	-3.693e+01	1.77%	0.59%	229.7bp (214.7bp)	Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.746) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-13	-3.076e+01	17.03%	13.08%	303.9bp (204.0bp)	STP4/MA0397.1/Jaspar(0.731) More Information \| Similar Motifs Found	motif file (matrix)