Information for 9-AGAGTGAG (Motif 7)


Reverse Opposite:

p-value:1e-34
log p-value:-8.050e+01
Information Content per bp:1.770
Number of Target Sequences with motif962.0
Percentage of Target Sequences with motif21.81%
Number of Background Sequences with motif3099.4
Percentage of Background Sequences with motif14.79%
Average Position of motif in Targets414.6 +/- 340.9bp
Average Position of motif in Background279.1 +/- 193.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGAG
RGAGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
GAGAGAGAGA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGAGTGAG-----
AGAGAGAGAGNAA

Trl/dmmpmm(Down)/fly

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG---
GAGAGAGAGAGC

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
RGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
TGAGTG--

Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGAG---
CAGTGTGACCRK

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-----
GAGAGAGAGAGCAA