Information for 20-SCGTCGGC (Motif 13)


Reverse Opposite:

p-value:1e-18
log p-value:-4.230e+01
Information Content per bp:1.691
Number of Target Sequences with motif219.0
Percentage of Target Sequences with motif4.96%
Number of Background Sequences with motif541.5
Percentage of Background Sequences with motif2.58%
Average Position of motif in Targets470.2 +/- 294.7bp
Average Position of motif in Background293.9 +/- 223.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ERF105/MA1000.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:SCGTCGGC-
-CGCCGGCA

ERF6/MA1006.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:SCGTCGGC--
NCGCCGGCAN

Mad/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:SCGTCGGC--
GCGNCGCCNG

ERF13/MA1004.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:SCGTCGGC-
-TGGCGGCG

ERF094/MA1049.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:SCGTCGGC-
-CGGCGGCG

brk/dmmpmm(Down)/fly

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-SCGTCGGC
AGCGCCGG-

ERF096/MA0998.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:SCGTCGGC--
NNGGCGGCGN

ERF098/MA0999.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:SCGTCGGC--
--GGCGGCNN

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--SCGTCGGC--
CAACGTCCGCGG

ERF039/MA0995.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:SCGTCGGC--
GTGTCGGTGG