Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Kt_2_S14_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3934
Total background sequences = 19839
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-197	-4.539e+02	29.18%	11.47%	333.8bp (227.2bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-87	-2.022e+02	40.57%	25.97%	350.7bp (213.7bp)	PB0192.1_Tcfap2e_2/Jaspar(0.902) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-86	-1.993e+02	40.62%	26.11%	368.9bp (262.4bp)	RSC3/MA0374.1/Jaspar(0.923) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-46	-1.076e+02	13.27%	6.79%	337.5bp (245.9bp)	IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer(0.962) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-36	-8.413e+01	10.42%	5.31%	343.7bp (230.4bp)	PDR3/MA0353.1/Jaspar(0.761) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-35	-8.238e+01	21.94%	14.45%	338.0bp (216.2bp)	GAGA-repeat/Arabidopsis-Promoters/Homer(0.788) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-31	-7.332e+01	12.86%	7.44%	374.6bp (231.8bp)	RPH1/Literature(Harbison)/Yeast(0.749) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-31	-7.279e+01	29.31%	21.30%	343.8bp (235.6bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.976) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-31	-7.231e+01	50.99%	41.68%	360.7bp (211.8bp)	TATA-box/SacCer-Promoters/Homer(0.907) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-31	-7.230e+01	7.98%	3.87%	291.9bp (254.4bp)	RDS1(MacIsaac)/Yeast(0.866) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-27	-6.358e+01	15.68%	10.04%	350.5bp (216.5bp)	lin-14/MA0261.1/Jaspar(0.787) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-20	-4.653e+01	2.14%	0.64%	308.4bp (244.4bp)	Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.746) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-19	-4.376e+01	7.45%	4.25%	381.2bp (199.0bp)	CHA4(MacIsaac)/Yeast(0.886) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-18	-4.298e+01	25.29%	19.45%	370.7bp (220.6bp)	STP4/MA0397.1/Jaspar(0.724) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-17	-4.085e+01	5.47%	2.87%	325.2bp (200.6bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-17	-3.974e+01	5.69%	3.06%	260.5bp (217.0bp)	SFP1(MacIsaac)/Yeast(0.876) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-17	-3.932e+01	4.40%	2.15%	361.0bp (238.8bp)	Adf1/dmmpmm(Pollard)/fly(0.696) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-10	-2.410e+01	31.70%	26.99%	324.6bp (216.6bp)	GMEB2/MA0862.1/Jaspar(0.836) More Information \| Similar Motifs Found	motif file (matrix)