Information for 9-CGCCTTAA (Motif 7)


Reverse Opposite:

p-value:1e-31
log p-value:-7.332e+01
Information Content per bp:1.889
Number of Target Sequences with motif506.0
Percentage of Target Sequences with motif12.86%
Number of Background Sequences with motif1475.2
Percentage of Background Sequences with motif7.44%
Average Position of motif in Targets437.3 +/- 374.6bp
Average Position of motif in Background296.3 +/- 231.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

RPH1(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCCTTAA--
CCCCTTAAGG

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCTTAA
NNGGCCACGCCTTTN

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGCCTTAA
CAAGACGCCTTA-

MSN4(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
CCCCCTT--

RPH1/MA0372.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAA-

GIS1/MA0306.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGCCTTAA
ACCCCTAAA

MSN4/Literature(Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTTAA
NCCCCTG--

YY2/MA0748.1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGCCTTAA
GTCCGCCATTA

PHO2(MacIsaac)/Yeast

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGCCTTAA-
---CTTAAT