Information for 8-AGAGTGAG (Motif 6)


Reverse Opposite:

p-value:1e-35
log p-value:-8.238e+01
Information Content per bp:1.807
Number of Target Sequences with motif863.0
Percentage of Target Sequences with motif21.94%
Number of Background Sequences with motif2865.4
Percentage of Background Sequences with motif14.45%
Average Position of motif in Targets414.8 +/- 338.0bp
Average Position of motif in Background296.8 +/- 216.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGAG
RGAGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
GAGAGAGAGA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
RGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGAGTGAG-----
AGAGAGAGAGNAA

Trl/dmmpmm(Down)/fly

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG---
GAGAGAGAGAGC

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
TGAGTG--

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AGAGTGAG--
----TGAGTG

BAS1(MacIsaac)/Yeast

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGAGTGAG
GNAAGAGTCA-