Information for 3-CGCGCCGC (Motif 3)


Reverse Opposite:

p-value:1e-86
log p-value:-1.993e+02
Information Content per bp:1.568
Number of Target Sequences with motif1598.0
Percentage of Target Sequences with motif40.62%
Number of Background Sequences with motif5177.8
Percentage of Background Sequences with motif26.11%
Average Position of motif in Targets481.7 +/- 368.9bp
Average Position of motif in Background297.5 +/- 262.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC3/MA0374.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CGCGCCGC
CGCGCGG-

RSC30/MA0375.1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGC
CGCGCGCG--

MBP1/MA0329.1/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCCGC
NNCGCGT---

SWI6(MacIsaac)/Yeast

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CGCGCCGC
CGCGTC--

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CGCGCCGC
TAGCGCGC---

MBP1(MacIsaac)/Yeast

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGCGCCGC
ACGCGTC--

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CGCGCCGC
ACGCGTC--

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CGCGCCGC
ACGCGTT--

SUT1(MacIsaac)/Yeast

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCGCCGC
CGCGGGG-

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:10
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CGCGCCGC
HHCACGCGCBTN