| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-217 | -5.011e+02 | 0.0000 | 1430.0 | 36.35% | 3113.3 | 15.70% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-165 | -3.812e+02 | 0.0000 | 883.0 | 22.45% | 1619.3 | 8.16% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-72 | -1.669e+02 | 0.0000 | 1907.0 | 48.47% | 6832.7 | 34.45% | motif file (matrix) |
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| 4 |  | SeqBias: CG-repeat | 1e-62 | -1.432e+02 | 0.0000 | 780.0 | 19.83% | 2129.8 | 10.74% | motif file (matrix) |
pdf |
| 5 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-52 | -1.206e+02 | 0.0000 | 559.0 | 14.21% | 1417.5 | 7.15% | motif file (matrix) |
pdf |
| 6 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-42 | -9.849e+01 | 0.0000 | 637.0 | 16.19% | 1829.4 | 9.22% | motif file (matrix) |
pdf |
| 7 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-42 | -9.775e+01 | 0.0000 | 1020.0 | 25.93% | 3408.8 | 17.19% | motif file (matrix) |
pdf |
| 8 |  | SFP1/SacCer-Promoters/Homer | 1e-40 | -9.431e+01 | 0.0000 | 604.0 | 15.35% | 1726.8 | 8.71% | motif file (matrix) |
pdf |
| 9 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-40 | -9.230e+01 | 0.0000 | 417.0 | 10.60% | 1039.5 | 5.24% | motif file (matrix) |
pdf |
| 10 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-39 | -9.107e+01 | 0.0000 | 546.0 | 13.88% | 1522.7 | 7.68% | motif file (matrix) |
pdf |
| 11 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-37 | -8.717e+01 | 0.0000 | 394.0 | 10.02% | 981.9 | 4.95% | motif file (matrix) |
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| 12 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-37 | -8.609e+01 | 0.0000 | 471.0 | 11.97% | 1267.7 | 6.39% | motif file (matrix) |
pdf |
| 13 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-33 | -7.825e+01 | 0.0000 | 379.0 | 9.63% | 970.4 | 4.89% | motif file (matrix) |
pdf |
| 14 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-31 | -7.175e+01 | 0.0000 | 568.0 | 14.44% | 1730.9 | 8.73% | motif file (matrix) |
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| 15 |  | E-box/Arabidopsis-Promoters/Homer | 1e-29 | -6.832e+01 | 0.0000 | 501.0 | 12.74% | 1488.7 | 7.51% | motif file (matrix) |
pdf |
| 16 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-24 | -5.602e+01 | 0.0000 | 919.0 | 23.36% | 3358.6 | 16.93% | motif file (matrix) |
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| 17 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-24 | -5.551e+01 | 0.0000 | 830.0 | 21.10% | 2971.4 | 14.98% | motif file (matrix) |
pdf |
| 18 |  | E-box(bHLH)/Promoter/Homer | 1e-23 | -5.445e+01 | 0.0000 | 131.0 | 3.33% | 236.3 | 1.19% | motif file (matrix) |
pdf |
| 19 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-22 | -5.269e+01 | 0.0000 | 1264.0 | 32.13% | 4969.3 | 25.06% | motif file (matrix) |
pdf |
| 20 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-22 | -5.093e+01 | 0.0000 | 408.0 | 10.37% | 1241.9 | 6.26% | motif file (matrix) |
pdf |
| 21 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-21 | -4.925e+01 | 0.0000 | 128.0 | 3.25% | 242.2 | 1.22% | motif file (matrix) |
pdf |
| 22 |  | TATA-box/SacCer-Promoters/Homer | 1e-20 | -4.738e+01 | 0.0000 | 1748.0 | 44.43% | 7357.5 | 37.10% | motif file (matrix) |
pdf |
| 23 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-20 | -4.680e+01 | 0.0000 | 1029.0 | 26.16% | 3963.4 | 19.98% | motif file (matrix) |
pdf |
| 24 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-19 | -4.512e+01 | 0.0000 | 391.0 | 9.94% | 1216.1 | 6.13% | motif file (matrix) |
pdf |
| 25 |  | TOD6?/SacCer-Promoters/Homer | 1e-19 | -4.468e+01 | 0.0000 | 318.0 | 8.08% | 932.9 | 4.70% | motif file (matrix) |
pdf |
| 26 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-19 | -4.416e+01 | 0.0000 | 757.0 | 19.24% | 2774.1 | 13.99% | motif file (matrix) |
pdf |
| 27 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-17 | -3.970e+01 | 0.0000 | 760.0 | 19.32% | 2840.0 | 14.32% | motif file (matrix) |
pdf |
| 28 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-15 | -3.513e+01 | 0.0000 | 526.0 | 13.37% | 1868.4 | 9.42% | motif file (matrix) |
pdf |
| 29 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-14 | -3.416e+01 | 0.0000 | 746.0 | 18.96% | 2848.2 | 14.36% | motif file (matrix) |
pdf |
| 30 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-13 | -3.183e+01 | 0.0000 | 1327.0 | 33.73% | 5587.3 | 28.17% | motif file (matrix) |
pdf |
| 31 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.147e+01 | 0.0000 | 237.0 | 6.02% | 708.9 | 3.57% | motif file (matrix) |
pdf |
| 32 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.031e+01 | 0.0000 | 311.0 | 7.91% | 1012.6 | 5.11% | motif file (matrix) |
pdf |
| 33 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-13 | -2.995e+01 | 0.0000 | 993.0 | 25.24% | 4042.2 | 20.38% | motif file (matrix) |
pdf |
| 34 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.668e+01 | 0.0000 | 314.0 | 7.98% | 1057.4 | 5.33% | motif file (matrix) |
pdf |
| 35 |  | SUT1?/SacCer-Promoters/Homer | 1e-11 | -2.564e+01 | 0.0000 | 2761.0 | 70.18% | 12911.5 | 65.10% | motif file (matrix) |
pdf |
| 36 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-10 | -2.387e+01 | 0.0000 | 283.0 | 7.19% | 955.9 | 4.82% | motif file (matrix) |
pdf |
| 37 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-10 | -2.316e+01 | 0.0000 | 149.0 | 3.79% | 426.6 | 2.15% | motif file (matrix) |
pdf |
| 38 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.293e+01 | 0.0000 | 269.0 | 6.84% | 907.0 | 4.57% | motif file (matrix) |
pdf |
| 39 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-9 | -2.180e+01 | 0.0000 | 436.0 | 11.08% | 1634.2 | 8.24% | motif file (matrix) |
pdf |
| 40 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-8 | -1.994e+01 | 0.0000 | 120.0 | 3.05% | 337.1 | 1.70% | motif file (matrix) |
pdf |
| 41 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.864e+01 | 0.0000 | 58.0 | 1.47% | 125.5 | 0.63% | motif file (matrix) |
pdf |
| 42 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.821e+01 | 0.0000 | 140.0 | 3.56% | 425.7 | 2.15% | motif file (matrix) |
pdf |
| 43 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-7 | -1.787e+01 | 0.0000 | 497.0 | 12.63% | 1963.3 | 9.90% | motif file (matrix) |
pdf |
| 44 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-7 | -1.621e+01 | 0.0000 | 126.0 | 3.20% | 385.7 | 1.94% | motif file (matrix) |
pdf |
| 45 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-6 | -1.493e+01 | 0.0000 | 183.0 | 4.65% | 627.0 | 3.16% | motif file (matrix) |
pdf |
| 46 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-5 | -1.377e+01 | 0.0000 | 96.0 | 2.44% | 286.1 | 1.44% | motif file (matrix) |
pdf |
| 47 |  | SeqBias: TA-repeat | 1e-5 | -1.362e+01 | 0.0000 | 3473.0 | 88.28% | 16997.1 | 85.70% | motif file (matrix) |
pdf |
| 48 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-5 | -1.318e+01 | 0.0000 | 671.0 | 17.06% | 2855.0 | 14.40% | motif file (matrix) |
pdf |
| 49 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.316e+01 | 0.0000 | 1312.0 | 33.35% | 5937.0 | 29.94% | motif file (matrix) |
pdf |
| 50 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-5 | -1.247e+01 | 0.0000 | 280.0 | 7.12% | 1075.9 | 5.43% | motif file (matrix) |
pdf |
| 51 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-5 | -1.201e+01 | 0.0000 | 129.0 | 3.28% | 432.6 | 2.18% | motif file (matrix) |
pdf |
| 52 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-5 | -1.158e+01 | 0.0001 | 440.0 | 11.18% | 1814.2 | 9.15% | motif file (matrix) |
pdf |
| 53 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.154e+01 | 0.0001 | 532.0 | 13.52% | 2241.9 | 11.30% | motif file (matrix) |
pdf |
| 54 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.147e+01 | 0.0001 | 474.0 | 12.05% | 1973.6 | 9.95% | motif file (matrix) |
pdf |
| 55 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.131e+01 | 0.0001 | 489.0 | 12.43% | 2046.5 | 10.32% | motif file (matrix) |
pdf |
| 56 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-4 | -1.047e+01 | 0.0002 | 1503.0 | 38.21% | 6963.6 | 35.11% | motif file (matrix) |
pdf |
| 57 |  | NRF(NRF)/Promoter/Homer | 1e-4 | -9.815e+00 | 0.0004 | 94.0 | 2.39% | 310.0 | 1.56% | motif file (matrix) |
pdf |
| 58 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-4 | -9.754e+00 | 0.0004 | 202.0 | 5.13% | 770.4 | 3.88% | motif file (matrix) |
pdf |
| 59 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.717e+00 | 0.0004 | 944.0 | 24.00% | 4251.3 | 21.44% | motif file (matrix) |
pdf |
| 60 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -9.156e+00 | 0.0007 | 205.0 | 5.21% | 792.7 | 4.00% | motif file (matrix) |
pdf |
| 61 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -9.130e+00 | 0.0007 | 690.0 | 17.54% | 3047.6 | 15.37% | motif file (matrix) |
pdf |
| 62 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -9.113e+00 | 0.0007 | 773.0 | 19.65% | 3445.9 | 17.37% | motif file (matrix) |
pdf |
| 63 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -8.851e+00 | 0.0009 | 172.0 | 4.37% | 651.1 | 3.28% | motif file (matrix) |
pdf |
| 64 |  | PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.806e+00 | 0.0009 | 78.0 | 1.98% | 253.6 | 1.28% | motif file (matrix) |
pdf |
| 65 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -8.321e+00 | 0.0014 | 382.0 | 9.71% | 1614.6 | 8.14% | motif file (matrix) |
pdf |
| 66 |  | TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-3 | -8.235e+00 | 0.0016 | 50.0 | 1.27% | 147.5 | 0.74% | motif file (matrix) |
pdf |
| 67 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-3 | -8.048e+00 | 0.0018 | 89.0 | 2.26% | 305.2 | 1.54% | motif file (matrix) |
pdf |
| 68 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.845e+00 | 0.0022 | 82.0 | 2.08% | 278.5 | 1.40% | motif file (matrix) |
pdf |
| 69 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.832e+00 | 0.0022 | 43.0 | 1.09% | 123.6 | 0.62% | motif file (matrix) |
pdf |
| 70 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -7.797e+00 | 0.0023 | 44.0 | 1.12% | 127.3 | 0.64% | motif file (matrix) |
pdf |
| 71 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-3 | -7.687e+00 | 0.0025 | 1538.0 | 39.10% | 7244.5 | 36.53% | motif file (matrix) |
pdf |
| 72 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-3 | -7.548e+00 | 0.0028 | 736.0 | 18.71% | 3316.2 | 16.72% | motif file (matrix) |
pdf |
| 73 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -7.500e+00 | 0.0029 | 1235.0 | 31.39% | 5752.7 | 29.01% | motif file (matrix) |
pdf |
| 74 |  | TATA-box/Drosophila-Promoters/Homer | 1e-3 | -7.387e+00 | 0.0032 | 192.0 | 4.88% | 762.9 | 3.85% | motif file (matrix) |
pdf |
| 75 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.790e+00 | 0.0058 | 529.0 | 13.45% | 2347.4 | 11.84% | motif file (matrix) |
pdf |
| 76 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.244e+00 | 0.0099 | 171.0 | 4.35% | 687.7 | 3.47% | motif file (matrix) |
pdf |
| 77 |  | ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.841e+00 | 0.0146 | 48.0 | 1.22% | 157.8 | 0.80% | motif file (matrix) |
pdf |
| 78 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.836e+00 | 0.0146 | 40.0 | 1.02% | 125.3 | 0.63% | motif file (matrix) |
pdf |
| 79 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.797e+00 | 0.0149 | 556.0 | 14.13% | 2508.8 | 12.65% | motif file (matrix) |
pdf |
| 80 |  | CRE(bZIP)/Promoter/Homer | 1e-2 | -5.769e+00 | 0.0151 | 170.0 | 4.32% | 691.4 | 3.49% | motif file (matrix) |
pdf |
| 81 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-2 | -5.387e+00 | 0.0219 | 101.0 | 2.57% | 388.2 | 1.96% | motif file (matrix) |
pdf |
| 82 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.358e+00 | 0.0222 | 156.0 | 3.97% | 635.0 | 3.20% | motif file (matrix) |
pdf |
| 83 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.315e+00 | 0.0229 | 242.0 | 6.15% | 1032.3 | 5.21% | motif file (matrix) |
pdf |
| 84 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-2 | -5.174e+00 | 0.0261 | 315.0 | 8.01% | 1378.9 | 6.95% | motif file (matrix) |
pdf |
| 85 |  | Sp1(Zf)/Promoter/Homer | 1e-2 | -5.140e+00 | 0.0267 | 46.0 | 1.17% | 155.3 | 0.78% | motif file (matrix) |
pdf |
| 86 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.871e+00 | 0.0345 | 95.0 | 2.41% | 369.5 | 1.86% | motif file (matrix) |
pdf |
| 87 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-2 | -4.859e+00 | 0.0345 | 112.0 | 2.85% | 445.6 | 2.25% | motif file (matrix) |
pdf |
| 88 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -4.848e+00 | 0.0345 | 451.0 | 11.46% | 2036.8 | 10.27% | motif file (matrix) |
pdf |
| 89 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.772e+00 | 0.0368 | 49.0 | 1.25% | 171.2 | 0.86% | motif file (matrix) |
pdf |
| 90 |  | ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.651e+00 | 0.0411 | 148.0 | 3.76% | 612.8 | 3.09% | motif file (matrix) |
pdf |