Information for 7-TGCACGGA (Motif 5)


Reverse Opposite:

p-value:1e-36
log p-value:-8.413e+01
Information Content per bp:1.872
Number of Target Sequences with motif410.0
Percentage of Target Sequences with motif10.42%
Number of Background Sequences with motif1053.2
Percentage of Background Sequences with motif5.31%
Average Position of motif in Targets465.2 +/- 343.7bp
Average Position of motif in Background294.6 +/- 230.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PDR3/MA0353.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

PDR3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

PDR3(MacIsaac)/Yeast

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

HAL9/MA0311.1/Jaspar

Match Rank:4
Score:0.75
Offset:4
Orientation:forward strand
Alignment:TGCACGGA-
----CGGAA

YKL222C/MA0428.1/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TGCACGGA---
--AACGGAAAT

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

SPL14/MA0586.1/Jaspar

Match Rank:7
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

PDR1/MA0352.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TCCGCGGA

FHL1(MacIsaac)/Yeast

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
ATGTACGGAT

YRM1/MA0438.1/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TGCACGGA---
---ACGGAAAT