Information for 22-GCGGTCTA (Motif 17)


Reverse Opposite:

p-value:1e-17
log p-value:-3.932e+01
Information Content per bp:1.935
Number of Target Sequences with motif173.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif426.6
Percentage of Background Sequences with motif2.15%
Average Position of motif in Targets447.8 +/- 361.0bp
Average Position of motif in Background286.6 +/- 238.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Adf1/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTA
CGCGGTCG-

ZAP1/MA0589.1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCGGTCTA
GGCTCGGTCAA

ZAP1(WRKY(Zn))/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCGGTCTA
CTCGGTCAA

WRKY40/MA1085.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGGTCTA-
-TGGTCAAC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGGTCTA-
-CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTA-
VBSYGTCTGG

YAP1(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTA--
TGCTGACTAAT

RUNX2/MA0511.2/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCGGTCTA
TTGCGGTTT-

WRKY25/MA1081.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGGTCTA-
-CGGTCAAC

WRKY63/MA1092.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGGTCTA-
-CGGTCAAC