Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/DMSO_2_S12_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4371
Total background sequences = 21009
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-210	-4.842e+02	27.91%	10.89%	302.0bp (223.2bp)	REB1(MacIsaac)/Yeast(0.994) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-83	-1.921e+02	31.43%	19.11%	305.8bp (238.2bp)	RSC3/MA0374.1/Jaspar(0.942) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-82	-1.889e+02	42.87%	29.15%	343.1bp (206.5bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-56	-1.307e+02	41.66%	30.25%	339.0bp (206.7bp)	TATA-box/SacCer-Promoters/Homer(0.889) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-46	-1.062e+02	18.05%	10.76%	319.2bp (217.8bp)	ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer(0.692) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-45	-1.054e+02	5.90%	2.12%	254.6bp (231.7bp)	TYE7(MacIsaac)/Yeast(0.997) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-43	-1.011e+02	16.82%	9.94%	310.0bp (200.6bp)	FHL1(MacIsaac)/Yeast(0.770) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-41	-9.622e+01	18.65%	11.56%	324.8bp (208.9bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.787) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-31	-7.242e+01	6.36%	2.91%	299.4bp (197.4bp)	OPI1/Literature(Harbison)/Yeast(0.906) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-26	-5.997e+01	7.34%	3.86%	349.1bp (209.6bp)	MTF1/MA0863.1/Jaspar(0.714) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-25	-5.797e+01	9.08%	5.21%	325.1bp (193.8bp)	TOD6?/SacCer-Promoters/Homer(0.941) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-22	-5.296e+01	31.32%	24.63%	346.4bp (209.5bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.713) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-22	-5.175e+01	23.77%	17.84%	330.9bp (177.2bp)	SFP1/SacCer-Promoters/Homer(0.874) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-19	-4.477e+01	8.05%	4.82%	304.6bp (199.1bp)	SeqBias: GA-repeat(0.876) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-18	-4.264e+01	8.21%	5.02%	318.0bp (206.5bp)	NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast(0.736) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-16	-3.857e+01	12.45%	8.64%	282.7bp (198.0bp)	Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.694) More Information \| Similar Motifs Found	motif file (matrix)
17 *		1e-11	-2.708e+01	5.61%	3.50%	219.5bp (188.8bp)	Hand1::Tcf3/MA0092.1/Jaspar(0.737) More Information \| Similar Motifs Found	motif file (matrix)