Information for 19-AGAGAGAG (Motif 14)


Reverse Opposite:

p-value:1e-19
log p-value:-4.477e+01
Information Content per bp:1.796
Number of Target Sequences with motif352.0
Percentage of Target Sequences with motif8.05%
Number of Background Sequences with motif1012.5
Percentage of Background Sequences with motif4.82%
Average Position of motif in Targets404.2 +/- 304.6bp
Average Position of motif in Background275.4 +/- 199.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAG-
GAGAGAGAGA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:AGAGAGAG
RGAGAGAG

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGAG
RGAGAGAGAG

Trl/dmmpmm(Down)/fly

Match Rank:4
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAG---
GAGAGAGAGAGC

Trl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:AGAGAGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAG---
-GAGAGAGCAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:AGAGAGAG-----
AGAGAGAGAGNAA

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAG------
GAGAGAGARAGARAG

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGAG---
GAGAGAGAGAGCAA

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGAG-
GAAAGTGAAAGT