Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Cz_1_S16_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3740
Total background sequences = 19804
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-176	-4.055e+02	23.50%	8.23%	298.1bp (238.0bp)	REB1(MacIsaac)/Yeast(0.990) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-77	-1.779e+02	36.65%	23.07%	320.7bp (210.1bp)	PB0192.1_Tcfap2e_2/Jaspar(0.892) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-76	-1.753e+02	30.87%	18.31%	338.3bp (264.2bp)	RSC30/MA0375.1/Jaspar(0.931) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-44	-1.022e+02	7.75%	3.05%	298.8bp (221.2bp)	IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer(0.963) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-31	-7.364e+01	44.75%	35.32%	318.3bp (210.3bp)	TATA-box/SacCer-Promoters/Homer(0.878) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-29	-6.697e+01	11.12%	6.20%	316.5bp (218.6bp)	TOD6?/SacCer-Promoters/Homer(0.948) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-26	-6.203e+01	6.87%	3.27%	408.3bp (238.9bp)	Adf1/dmmpmm(Pollard)/fly(0.734) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-25	-5.803e+01	17.03%	11.26%	315.6bp (248.3bp)	SeqBias: CA-repeat(0.879) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-25	-5.757e+01	41.67%	33.48%	340.8bp (233.1bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.727) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-24	-5.550e+01	5.77%	2.67%	349.8bp (247.9bp)	RPH1/Literature(Harbison)/Yeast(0.727) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-22	-5.231e+01	22.35%	16.10%	325.9bp (215.0bp)	GMEB2/MA0862.1/Jaspar(0.866) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-21	-4.882e+01	27.37%	20.80%	302.3bp (216.8bp)	Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer(0.665) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-15	-3.589e+01	5.29%	2.83%	327.2bp (213.4bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-9	-2.270e+01	3.69%	2.06%	261.4bp (197.1bp)	PB0098.1_Zfp410_1/Jaspar(0.704) More Information \| Similar Motifs Found	motif file (matrix)