Information for 8-RGTATATA (Motif 5)


Reverse Opposite:

p-value:1e-31
log p-value:-7.364e+01
Information Content per bp:1.869
Number of Target Sequences with motif1674.0
Percentage of Target Sequences with motif44.75%
Number of Background Sequences with motif6994.2
Percentage of Background Sequences with motif35.32%
Average Position of motif in Targets379.4 +/- 318.3bp
Average Position of motif in Background284.5 +/- 210.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:RGTATATA----
--TATATAWDVV

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:RGTATATA
--TATAT-

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:RGTATATA--
-GTATATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.84
Offset:1
Orientation:forward strand
Alignment:RGTATATA---
-GTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---RGTATATA------
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:RGTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:RGTATATA--------
-GTATAAAAGGCGGGG

Cf2-II/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-RGTATATA
GAGTATAA-

NHP6A/MA0345.1/Jaspar

Match Rank:9
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------RGTATATA-------
ATGACCTATATATAAAAATGA

bin/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.76
Offset:1
Orientation:forward strand
Alignment:RGTATATA
-ATAAATA