Information for 3-NVCGCGCG (Motif 3)


Reverse Opposite:

p-value:1e-76
log p-value:-1.753e+02
Information Content per bp:1.573
Number of Target Sequences with motif1155.0
Percentage of Target Sequences with motif30.87%
Number of Background Sequences with motif3625.9
Percentage of Background Sequences with motif18.31%
Average Position of motif in Targets443.4 +/- 338.3bp
Average Position of motif in Background287.1 +/- 264.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC30/MA0375.1/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:NVCGCGCG
CGCGCGCG

RSC3/MA0374.1/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NVCGCGCG
-NNGCGCG

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:NVCGCGCG---
---GCGCGCTA

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---NVCGCGCG-----
NCANGCGCGCGCGCCA

Tcfl5/MA0632.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:forward strand
Alignment:NVCGCGCG--
GGCACGTGCC

SeqBias: CG-repeat

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:NVCGCGCG--
CGCGCGCGCG

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:NVCGCGCG----
NAVGCGCGTGDD

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---NVCGCGCG----
ATAAAGGCGCGCGAT

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----NVCGCGCG--
ATAAGGGCGCGCGAT

DAL82/MA0291.1/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--NVCGCGCG
AATGTGCGC-