Information for 18-CTAGCCTA (Motif 12)


Reverse Opposite:

p-value:1e-21
log p-value:-4.882e+01
Information Content per bp:1.687
Number of Target Sequences with motif1024.0
Percentage of Target Sequences with motif27.37%
Number of Background Sequences with motif4119.6
Percentage of Background Sequences with motif20.80%
Average Position of motif in Targets399.7 +/- 302.3bp
Average Position of motif in Background283.4 +/- 216.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTAGCCTA
BCAGACWA

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCCTA
TGTCTAGACG-

ABF2/MA0266.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTAGCCTA
TCTAGAN--

REB1/MA0363.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTAGCCTA
GTTACCCGG

STP3/MA0396.1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTAGCCTA
TGCGCTAGC---

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGCCTA---
CNNNGCTACTGTANNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCCTA
NNACTTGCCTT

MYB111/MA1036.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCCTA
TACCTACC---

REB1/SacCer-Promoters/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCCTA-
YYRTTACCCGGM

TRB2/MA1073.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTAGCCTA
TGCCCTAA----