Information for 2-GAAAAAAA (Motif 2)


Reverse Opposite:

p-value:1e-77
log p-value:-1.779e+02
Information Content per bp:1.987
Number of Target Sequences with motif1371.0
Percentage of Target Sequences with motif36.65%
Number of Background Sequences with motif4568.5
Percentage of Background Sequences with motif23.07%
Average Position of motif in Targets384.0 +/- 320.7bp
Average Position of motif in Background286.5 +/- 210.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.89
Offset:-5
Orientation:forward strand
Alignment:-----GAAAAAAA-
TACTGGAAAAAAAA

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:GAAAAAAA
--AAAAAA

hb/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GAAAAAAA--
ACNAAAAAAACA

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----GAAAAAAA-----
GTTAAAAAAAAAAATTA

hb/dmmpmm(Down)/fly

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAAAA
CATAAAAAA

hb/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAAAA
ATAAAAAA-

hb/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GAAAAAAA
CATAAAAAA-

SeqBias: polyA-repeat

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GAAAAAAA---
-AAAAAAAAAA

hb/MA0049.1/Jaspar

Match Rank:9
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GAAAAAAA
GCATAAAAAA

hb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GAAAAAAA
CAAAAAAA