Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Ct_3_S24_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3961
Total background sequences = 21834
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-214	-4.936e+02	23.38%	7.41%	279.9bp (202.3bp)	REB1(MacIsaac)/Yeast(0.991) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-106	-2.447e+02	37.59%	22.15%	304.7bp (230.6bp)	RSC3/MA0374.1/Jaspar(0.902) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-83	-1.917e+02	41.88%	27.53%	306.8bp (200.6bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-43	-9.951e+01	39.56%	29.25%	328.0bp (193.3bp)	TATA-box/SacCer-Promoters/Homer(0.886) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-41	-9.453e+01	6.72%	2.63%	302.5bp (222.5bp)	CMTA3/MA0970.1/Jaspar(0.777) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-38	-8.894e+01	5.45%	1.95%	252.5bp (199.6bp)	MLXIPL/MA0664.1/Jaspar(0.946) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-36	-8.495e+01	13.78%	7.80%	321.9bp (192.3bp)	lin-14/MA0261.1/Jaspar(0.768) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-34	-7.964e+01	25.09%	17.28%	328.3bp (222.7bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.931) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-33	-7.650e+01	17.29%	10.86%	337.7bp (195.8bp)	GAGA-repeat/Arabidopsis-Promoters/Homer(0.818) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-30	-7.124e+01	8.05%	3.96%	327.1bp (199.8bp)	RPH1/Literature(Harbison)/Yeast(0.702) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-29	-6.774e+01	36.58%	28.24%	340.3bp (191.5bp)	HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer(0.788) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-29	-6.771e+01	10.50%	5.83%	386.1bp (194.8bp)	TOD6?/SacCer-Promoters/Homer(0.948) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-25	-5.861e+01	23.81%	17.21%	307.3bp (168.6bp)	SFP1/SacCer-Promoters/Homer(0.875) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-16	-3.885e+01	5.58%	3.01%	250.4bp (187.5bp)	SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast(0.866) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-16	-3.830e+01	7.07%	4.15%	300.7bp (193.5bp)	z/dmmpmm(Down)/fly(0.747) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-15	-3.603e+01	4.75%	2.48%	323.4bp (180.4bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-14	-3.448e+01	23.20%	18.17%	331.8bp (194.5bp)	STP4/MA0397.1/Jaspar(0.732) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-14	-3.264e+01	3.69%	1.82%	195.5bp (161.8bp)	PB0098.1_Zfp410_1/Jaspar(0.704) More Information \| Similar Motifs Found	motif file (matrix)