Information for 3-AAAAAAAA (Motif 3)


Reverse Opposite:

p-value:1e-83
log p-value:-1.917e+02
Information Content per bp:1.530
Number of Target Sequences with motif1659.0
Percentage of Target Sequences with motif41.88%
Number of Background Sequences with motif6010.2
Percentage of Background Sequences with motif27.53%
Average Position of motif in Targets353.1 +/- 306.8bp
Average Position of motif in Background261.4 +/- 200.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.53
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAA----
GTTAAAAAAAAAAATTA

SeqBias: polyA-repeat

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AAAAAAAA--
AAAAAAAAAA

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------AAAAAAAA
TACTGGAAAAAAAA

hb/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAA--
ACNAAAAAAACA

hb/dmmpmm(Down)/fly

Match Rank:5
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAAAA
CATAAAAAA

hb/MA0049.1/Jaspar

Match Rank:6
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAA
GCATAAAAAA

hb/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:AAAAAAAA
ATAAAAAA

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:AAAAAAAA
AAAAAA--

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAA----
GTTCAAAAAAAAAATTC

hb/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAA
CATAAAAAA--