Information for 12-AGAGWGAG (Motif 9)


Reverse Opposite:

p-value:1e-33
log p-value:-7.650e+01
Information Content per bp:1.557
Number of Target Sequences with motif685.0
Percentage of Target Sequences with motif17.29%
Number of Background Sequences with motif2371.9
Percentage of Background Sequences with motif10.86%
Average Position of motif in Targets383.8 +/- 337.7bp
Average Position of motif in Background263.5 +/- 195.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--AGAGWGAG
RGAGAGAGAG

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGAGWGAG
RGAGAGAG

SeqBias: GA-repeat

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGAGWGAG-
GAGAGAGAGA

Trl/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AGAGWGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:AGAGWGAG---
-GAGAGAGCAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGAGWGAG-----
AGAGAGAGAGNAA

Trl/dmmpmm(Down)/fly

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGAGWGAG---
GAGAGAGAGAGC

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGWGAG
TGAGTG--

Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGAGWGAG---
CAGTGTGACCRK

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGAGWGAG
AGGTGTGA-