Information for 8-CCACWCGS (Motif 5)


Reverse Opposite:

p-value:1e-41
log p-value:-9.453e+01
Information Content per bp:1.567
Number of Target Sequences with motif266.0
Percentage of Target Sequences with motif6.72%
Number of Background Sequences with motif573.8
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets367.8 +/- 302.5bp
Average Position of motif in Background275.7 +/- 222.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CMTA3/MA0970.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CCACWCGS
NNNACGCGG

CMTA2/MA0969.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CCACWCGS---
--ACGCGGNNN

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CCACWCGS
ATCCAC----

MET31(MacIsaac)/Yeast

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCACWCGS
GCCACACC-

MET32/MA0334.1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CCACWCGS
CGCCACA---

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCACWCGS---
HHCACGCGCBTN

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CCACWCGS
MRSCACTYAA

BHLH34/MA0962.1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCACWCGS
CCACGTGC

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CCACWCGS
-CACGCA-

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCACWCGS-
GGCACGCGTC