Information for 16-TGCACGGA (Motif 11)


Reverse Opposite:

p-value:1e-29
log p-value:-6.774e+01
Information Content per bp:1.628
Number of Target Sequences with motif1449.0
Percentage of Target Sequences with motif36.58%
Number of Background Sequences with motif6166.5
Percentage of Background Sequences with motif28.24%
Average Position of motif in Targets412.5 +/- 340.3bp
Average Position of motif in Background265.8 +/- 191.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TGCACGGA-
-GCACGTAY

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGCACGGA
BGCACGTA

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGCACGGA---
-GCACGTACCC

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TGCACGGA-
-GCACGTNC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
TBGCACGCAA

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

SPL14/MA0586.1/Jaspar

Match Rank:7
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

SPL11/MA1056.1/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGCACGGA-
TATCGTACGGAT

SPL12/MA1057.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TGTACGGT

FHL1(MacIsaac)/Yeast

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
ATGTACGGAT