In [1]:
# Parameters
data_name = "Nr5a1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:26:07,140 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nr5a1: Motif: M09322_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr5a1: #17

Cell typeModiscoHomer
LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.0134112

Pattern: motif2.motif

Significance: 0.00465681

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0319899

Pattern: motif18.motif

Significance: 0.0413561

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.000141606

Pattern: motif14.motif

Significance: 0.0200965

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00249935

Pattern: motif12.motif

Significance: 0.00420516

ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000149005

Pattern: motif14.motif

Significance: 0.00485338

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.05832419999999999

Pattern: motif10.motif

Significance: 0.0257789

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.012358

/

Pattern: metacluster_1/pattern_17

Significance: 0.000141999

Pattern: motif1.motif

Significance: 0.00753827

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0281647

Pattern: motif3.motif

Significance: 0.022034400000000003

Adrenal;A;CL

Pattern: metacluster_1/pattern_0

Significance: 5.87243e-06

/

Pattern: metacluster_1/pattern_15

Significance: 0.00050104

Pattern: motif2.motif

Significance: 5.33842e-05

ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0270394

Pattern: motif19.motif

Significance: 0.00449416

npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00193789

Pattern: motif14.motif

Significance: 0.00281218

npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.004918

Pattern: motif32.motif

Significance: 0.00487705

ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00202159

Pattern: motif22.motif

Significance: 0.00284012

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0350342

Pattern: motif20.motif

Significance: 0.032818

ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00147199

Pattern: motif18.motif

Significance: 0.002876

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0438811

Pattern: motif12.motif

Significance: 0.0200445

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00573095

Pattern: motif2.motif

Significance: 0.0112895

Unique Cell types only TF-MoDISco finds Nr5a1: #19

Cell typeModiscoHomer
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 0.0203534

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00505698

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.0232641

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.029307599999999996

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0526977

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0194195

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.015119899999999999

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.014001

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.0198443

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.00412353

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.000201173

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.00064776

Absent
416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.000210065

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 0.0168373

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 0.050881300000000004

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.018757

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00103814

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0436366

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0393972

Absent
Unique Cell types only Homer finds Nr5a1: #2

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0530715

wES;MSDRM;E11.5;D;EnAbsent

Pattern: motif19.motif

Significance: 0.0343912