In [1]:
# Parameters
data_name = "Meis2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:19:46,744 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Meis2: Motif: M03262_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Meis2: #15

Cell typeModiscoHomer
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0248231

Pattern: motif18.motif

Significance: 0.0588486

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.016496

Pattern: motif15.motif

Significance: 0.014734700000000002

Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0479946

Pattern: motif11.motif

Significance: 0.04500440000000001

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.036148400000000004

Pattern: motif10.motif

Significance: 0.026440699999999998

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.050313800000000006

Pattern: motif16.motif

Significance: 0.0303236

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00690712

Pattern: motif9.motif

Significance: 0.028992700000000003

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0374353

Pattern: motif9.motif

Significance: 0.039970099999999995

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0327502

Pattern: motif11.motif

Significance: 0.036433099999999996

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.056937699999999994

Pattern: motif13.motif

Significance: 0.0285097

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.014643799999999998

Pattern: motif17.motif

Significance: 0.0491987

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0341519

Pattern: motif14.motif

Significance: 0.0397785

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.024883900000000004

Pattern: motif4.motif

Significance: 0.0216265

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0445385

Pattern: motif19.motif

Significance: 0.05663680000000001

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.047279400000000006

Pattern: motif13.motif

Significance: 0.05492180000000001

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0404717

Pattern: motif19.motif

Significance: 0.05435449999999999

Unique Cell types only TF-MoDISco finds Meis2: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.018145500000000002

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0560634

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.030504700000000003

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0209508

/

Pattern: metacluster_0/pattern_13

Significance: 0.031461

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0413984

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.050440399999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0166467

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.0338188

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.026290699999999997

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0337202

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.038207599999999994

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.019459

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0353589

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.028235900000000005

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0412789

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.05337859999999999

/

Pattern: metacluster_0/pattern_19

Significance: 0.0225669

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0357236

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.038727

Absent
Unique Cell types only Homer finds Meis2: #10

Cell typeModiscoHomer
LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.012877600000000001

preB;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0138835

CRBL_GRNL_Precrsr;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.0256628

NPC;F129;A;GEOAbsent

Pattern: motif10.motif

Significance: 0.0342759

prePLSM_B;A;GEOAbsent

Pattern: motif22.motif

Significance: 0.037337999999999996

NPC;G4;A;GEOAbsent

Pattern: motif9.motif

Significance: 0.00922498

NPC;mE6;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.0279158

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0309731

G_NRN_P;A;GEOAbsent

Pattern: motif5.motif

Significance: 0.0309927

ThMS_MEC;Aire++;A;GEOAbsent

Pattern: motif12.motif

Significance: 0.00838842