In [1]:
# Parameters
data_name = "Esrrg"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:05:42,329 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Esrrg: Motif: M00817_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Esrrg: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0283994

Pattern: motif17.motif

Significance: 0.05237959999999999

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.039649000000000004

Pattern: motif18.motif

Significance: 0.0486814

npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.000232558

Pattern: motif32.motif

Significance: 0.000594031

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.00154133

Pattern: motif14.motif

Significance: 0.00777215

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 9.500129999999999e-05

Pattern: motif12.motif

Significance: 0.00141002

ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0006088269999999999

Pattern: motif14.motif

Significance: 0.00044510400000000004

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0381031

Pattern: motif10.motif

Significance: 0.035436199999999994

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00910415

Pattern: motif5.motif

Significance: 0.0444551

Adrenal;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.000395126

/

Pattern: metacluster_1/pattern_15

Significance: 0.00188085

Pattern: motif2.motif

Significance: 0.00661535

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0340601

Pattern: motif19.motif

Significance: 0.05950219999999999

ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.011352600000000001

Pattern: motif19.motif

Significance: 0.000625882

npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00020229400000000003

Pattern: motif14.motif

Significance: 0.00103838

ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0125113

/

Pattern: metacluster_1/pattern_19

Significance: 0.00636792

Pattern: motif23.motif

Significance: 0.055987800000000004

ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00413907

Pattern: motif22.motif

Significance: 0.033596499999999994

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.045149

/

Pattern: metacluster_0/pattern_17

Significance: 0.0445172

Pattern: motif20.motif

Significance: 0.0591569

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0346191

Pattern: motif12.motif

Significance: 0.05183340000000001

ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0173197

Pattern: motif18.motif

Significance: 0.00095882

Unique Cell types only TF-MoDISco finds Esrrg: #26

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0340889

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0494844

/

Pattern: metacluster_0/pattern_23

Significance: 0.0375583

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.017946200000000002

Absent
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0478952

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.00198344

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0309498

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.040097100000000004

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.018623400000000002

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0138298

/

Pattern: metacluster_0/pattern_15

Significance: 0.0531196

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.03805580000000001

/

Pattern: metacluster_0/pattern_24

Significance: 0.025515400000000004

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0376601

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.0268269

Absent
CD4+CD8-TCR+CD25+Foxp3+;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0520505

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.0242303

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.000430705

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0493394

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0273586

Absent
416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00108844

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.046692800000000007

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00027240099999999997

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.00372115

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.000609707

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.000320068

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.051454

Absent
416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.00476346

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0359668

Absent
No Cell types only Homer finds Esrrg