Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/U_3_S30_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3767
Total background sequences = 20278
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-196	-4.526e+02	27.24%	9.96%	315.4bp (223.5bp)	REB1(MacIsaac)/Yeast(0.990) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-109	-2.519e+02	46.24%	29.04%	342.2bp (255.2bp)	RSC30/MA0375.1/Jaspar(0.865) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-72	-1.681e+02	41.70%	27.91%	339.6bp (211.4bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-51	-1.194e+02	6.45%	2.06%	286.7bp (211.2bp)	TYE7(MacIsaac)/Yeast(0.996) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-42	-9.816e+01	27.29%	18.16%	357.0bp (223.8bp)	PDR1/MA0352.1/Jaspar(0.890) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-36	-8.363e+01	12.95%	7.09%	350.9bp (213.3bp)	POL009.1_DCE_S_II/Jaspar(0.699) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-36	-8.304e+01	42.95%	33.07%	407.8bp (213.0bp)	TATA-box/SacCer-Promoters/Homer(0.901) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-35	-8.141e+01	28.86%	20.29%	360.2bp (219.0bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.809) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-30	-6.981e+01	23.39%	16.11%	362.7bp (218.6bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.720) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-29	-6.825e+01	9.21%	4.77%	303.6bp (243.6bp)	IME1(MacIsaac)/Yeast(0.674) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-29	-6.718e+01	12.66%	7.39%	310.6bp (210.6bp)	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(0.757) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-26	-6.209e+01	14.02%	8.65%	299.4bp (201.9bp)	RAP1/MA0359.1/Jaspar(0.781) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-20	-4.617e+01	9.34%	5.56%	389.7bp (206.6bp)	TOD6?/SacCer-Promoters/Homer(0.942) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-19	-4.386e+01	2.42%	0.79%	337.6bp (183.9bp)	RDS1/RDS1_H2O2Hi/[](Harbison)/Yeast(0.746) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-18	-4.317e+01	22.14%	16.50%	334.8bp (202.4bp)	dl/dmmpmm(Pollard)/fly(0.780) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-17	-4.127e+01	5.47%	2.81%	346.0bp (200.6bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-13	-3.169e+01	2.36%	0.94%	338.5bp (216.4bp)	ROX1/Literature(Harbison)/Yeast(0.802) More Information \| Similar Motifs Found	motif file (matrix)
18		1e-12	-2.916e+01	2.28%	0.93%	205.3bp (150.9bp)	HSF1/MA0319.1/Jaspar(0.671) More Information \| Similar Motifs Found	motif file (matrix)