Information for 23-CGCATTGT (Motif 17)


Reverse Opposite:

p-value:1e-13
log p-value:-3.169e+01
Information Content per bp:1.530
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif190.2
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets442.5 +/- 338.5bp
Average Position of motif in Background271.9 +/- 216.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ROX1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CGCATTGT-
CCCATTGTT

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CGCATTGT-
CTCATTGTC

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGCATTGT---
-CCWTTGTYYB

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CGCATTGT
--CTTTGT

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CGCATTGT-----
TGTTCCCATTGTGTACT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGCATTGT---
-CCATTGTTNY

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CGCATTGT---
-CCATTGTTTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CGCATTGT--
NCCATTGTTC

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGCATTGT
AGGVNCCTTTGT

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGCATTGT-------
CNNNTATTGTTCNNNNN