Information for 5-TTCCGCGG (Motif 5)


Reverse Opposite:

p-value:1e-42
log p-value:-9.816e+01
Information Content per bp:1.715
Number of Target Sequences with motif1028.0
Percentage of Target Sequences with motif27.29%
Number of Background Sequences with motif3683.2
Percentage of Background Sequences with motif18.16%
Average Position of motif in Targets449.1 +/- 357.0bp
Average Position of motif in Background288.7 +/- 223.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PDR1/MA0352.1/Jaspar

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:TTCCGCGG-
-TCCGCGGA

PDR3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.88
Offset:1
Orientation:forward strand
Alignment:TTCCGCGG-
-TCCGCGGA

PDR3(MacIsaac)/Yeast

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:TTCCGCGG-
-TCCGCGGA

PDR3/MA0353.1/Jaspar

Match Rank:4
Score:0.88
Offset:1
Orientation:forward strand
Alignment:TTCCGCGG-
-TCCGCGGA

SWI4(MacIsaac)/Yeast

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTCCGCGG
TTTTCGCGT

IME1/MA0320.1/Jaspar

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TTCCGCGG
CTCGGCGG

SWI6/SWI6_YPD/9-SWI4,9-SWI6(Harbison)/Yeast

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TTCCGCGG
TTTCGCGT

IME1(MacIsaac)/Yeast

Match Rank:8
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTCCGCGG
CTCGGCGG

HAL9/MA0311.1/Jaspar

Match Rank:9
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTCCGCGG
TTCCG---

RDR1/MA0360.1/Jaspar

Match Rank:10
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTCCGCGG
GTTCCGCA-