Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/It_2_S26_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4124
Total background sequences = 21632
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-224	-5.163e+02	28.15%	10.27%	302.5bp (201.3bp)	REB1(MacIsaac)/Yeast(0.993) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-99	-2.301e+02	43.04%	27.56%	339.2bp (225.9bp)	RSC3/MA0374.1/Jaspar(0.911) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-89	-2.069e+02	42.51%	27.84%	317.2bp (200.2bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-43	-1.004e+02	14.14%	7.73%	341.2bp (183.3bp)	TOD6?/SacCer-Promoters/Homer(0.851) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-40	-9.417e+01	11.76%	6.13%	284.9bp (200.8bp)	RAP1/MA0359.1/Jaspar(0.851) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-34	-7.899e+01	35.01%	26.32%	311.7bp (196.3bp)	TATA-box/SacCer-Promoters/Homer(0.885) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-29	-6.796e+01	16.25%	10.44%	301.7bp (165.4bp)	cad/dmmpmm(Down)/fly(0.857) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-28	-6.552e+01	40.20%	31.94%	309.1bp (187.0bp)	YAP3/MA0416.1/Jaspar(0.871) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-27	-6.313e+01	7.08%	3.52%	277.2bp (203.4bp)	OPI1/Literature(Harbison)/Yeast(0.911) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-24	-5.664e+01	19.54%	13.71%	357.8bp (197.5bp)	MSN2(MacIsaac)/Yeast(0.922) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-24	-5.566e+01	17.22%	11.77%	376.2bp (196.1bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.782) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-22	-5.115e+01	7.01%	3.77%	315.5bp (197.7bp)	SPL14(SBP)/Arabidopsis thaliana/AthaMap(0.823) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-17	-4.020e+01	9.68%	6.19%	294.0bp (195.1bp)	SWI4(MacIsaac)/Yeast(0.858) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-16	-3.874e+01	4.92%	2.58%	317.5bp (178.6bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-15	-3.657e+01	15.69%	11.43%	341.2bp (194.1bp)	PB0091.1_Zbtb3_1/Jaspar(0.706) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-13	-3.191e+01	6.84%	4.24%	339.6bp (179.6bp)	z/dmmpmm(Bigfoot)/fly(0.802) More Information \| Similar Motifs Found	motif file (matrix)