Information for 13-GGGTTCGA (Motif 9)


Reverse Opposite:

p-value:1e-27
log p-value:-6.313e+01
Information Content per bp:1.900
Number of Target Sequences with motif292.0
Percentage of Target Sequences with motif7.08%
Number of Background Sequences with motif761.7
Percentage of Background Sequences with motif3.52%
Average Position of motif in Targets342.1 +/- 277.2bp
Average Position of motif in Background266.1 +/- 203.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GGGTTCGA
-GATTCGA

OPI1(MacIsaac)/Yeast

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGGTTCGA
CGGTTCG-

OPI1/MA0349.1/Jaspar

Match Rank:3
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGTTCGA
CGGTTCG-

XBP1/MA0414.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GGGTTCGA-
--NCTCGAG

STB4/STB4_YPD/[](Harbison)/Yeast

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGGTTCGA
TCGGNNCGA

STB4(MacIsaac)/Yeast

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGGTTCGA
TCGGNNCGA

YER051W(MacIsaac)/Yeast

Match Rank:7
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GGGTTCGA-
---TTCGAA

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGGTTCGA----
TNTGGTTTCGATACN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGGTTCGA----
CTCCAGGGGTCAATTGA

SNF1(MacIsaac)/Yeast

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGGTTCGA-------
CCGGGTTCGATCCCCGG