| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-240 | -5.528e+02 | 0.0000 | 1446.0 | 35.06% | 3109.6 | 14.38% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-188 | -4.349e+02 | 0.0000 | 919.0 | 22.28% | 1651.4 | 7.63% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-70 | -1.634e+02 | 0.0000 | 1943.0 | 47.11% | 7273.2 | 33.62% | motif file (matrix) |
pdf |
| 4 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-64 | -1.477e+02 | 0.0000 | 567.0 | 13.75% | 1378.9 | 6.37% | motif file (matrix) |
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| 5 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-48 | -1.111e+02 | 0.0000 | 629.0 | 15.25% | 1792.7 | 8.29% | motif file (matrix) |
pdf |
| 6 |  | SFP1/SacCer-Promoters/Homer | 1e-48 | -1.105e+02 | 0.0000 | 636.0 | 15.42% | 1823.6 | 8.43% | motif file (matrix) |
pdf |
| 7 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-47 | -1.099e+02 | 0.0000 | 415.0 | 10.06% | 993.7 | 4.59% | motif file (matrix) |
pdf |
| 8 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-47 | -1.094e+02 | 0.0000 | 1038.0 | 25.17% | 3520.2 | 16.27% | motif file (matrix) |
pdf |
| 9 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-47 | -1.093e+02 | 0.0000 | 548.0 | 13.29% | 1487.2 | 6.88% | motif file (matrix) |
pdf |
| 10 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-46 | -1.082e+02 | 0.0000 | 403.0 | 9.77% | 958.2 | 4.43% | motif file (matrix) |
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| 11 |  | SeqBias: CG-repeat | 1e-46 | -1.069e+02 | 0.0000 | 727.0 | 17.63% | 2212.7 | 10.23% | motif file (matrix) |
pdf |
| 12 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-45 | -1.059e+02 | 0.0000 | 402.0 | 9.75% | 965.0 | 4.46% | motif file (matrix) |
pdf |
| 13 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-44 | -1.019e+02 | 0.0000 | 477.0 | 11.57% | 1257.0 | 5.81% | motif file (matrix) |
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| 14 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-33 | -7.746e+01 | 0.0000 | 559.0 | 13.55% | 1720.2 | 7.95% | motif file (matrix) |
pdf |
| 15 |  | E-box/Arabidopsis-Promoters/Homer | 1e-32 | -7.552e+01 | 0.0000 | 502.0 | 12.17% | 1502.1 | 6.94% | motif file (matrix) |
pdf |
| 16 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-32 | -7.371e+01 | 0.0000 | 826.0 | 20.03% | 2888.2 | 13.35% | motif file (matrix) |
pdf |
| 17 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-29 | -6.879e+01 | 0.0000 | 411.0 | 9.97% | 1183.5 | 5.47% | motif file (matrix) |
pdf |
| 18 |  | TOD6?/SacCer-Promoters/Homer | 1e-29 | -6.844e+01 | 0.0000 | 351.0 | 8.51% | 954.8 | 4.41% | motif file (matrix) |
pdf |
| 19 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-29 | -6.769e+01 | 0.0000 | 1252.0 | 30.36% | 4908.9 | 22.69% | motif file (matrix) |
pdf |
| 20 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-28 | -6.539e+01 | 0.0000 | 1041.0 | 25.24% | 3945.6 | 18.24% | motif file (matrix) |
pdf |
| 21 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-27 | -6.302e+01 | 0.0000 | 897.0 | 21.75% | 3310.5 | 15.30% | motif file (matrix) |
pdf |
| 22 |  | E-box(bHLH)/Promoter/Homer | 1e-26 | -6.136e+01 | 0.0000 | 129.0 | 3.13% | 221.7 | 1.03% | motif file (matrix) |
pdf |
| 23 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-23 | -5.463e+01 | 0.0000 | 134.0 | 3.25% | 254.4 | 1.18% | motif file (matrix) |
pdf |
| 24 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-22 | -5.296e+01 | 0.0000 | 747.0 | 18.11% | 2738.9 | 12.66% | motif file (matrix) |
pdf |
| 25 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-20 | -4.812e+01 | 0.0000 | 744.0 | 18.04% | 2777.6 | 12.84% | motif file (matrix) |
pdf |
| 26 |  | TATA-box/SacCer-Promoters/Homer | 1e-20 | -4.661e+01 | 0.0000 | 1777.0 | 43.09% | 7792.2 | 36.02% | motif file (matrix) |
pdf |
| 27 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-18 | -4.262e+01 | 0.0000 | 1312.0 | 31.81% | 5541.6 | 25.62% | motif file (matrix) |
pdf |
| 28 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-18 | -4.204e+01 | 0.0000 | 376.0 | 9.12% | 1226.8 | 5.67% | motif file (matrix) |
pdf |
| 29 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-16 | -3.750e+01 | 0.0000 | 731.0 | 17.73% | 2845.5 | 13.15% | motif file (matrix) |
pdf |
| 30 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-15 | -3.516e+01 | 0.0000 | 971.0 | 23.55% | 4008.1 | 18.53% | motif file (matrix) |
pdf |
| 31 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-14 | -3.427e+01 | 0.0000 | 504.0 | 12.22% | 1853.0 | 8.57% | motif file (matrix) |
pdf |
| 32 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-12 | -2.958e+01 | 0.0000 | 308.0 | 7.47% | 1046.4 | 4.84% | motif file (matrix) |
pdf |
| 33 |  | SUT1?/SacCer-Promoters/Homer | 1e-12 | -2.816e+01 | 0.0000 | 2755.0 | 66.80% | 13293.1 | 61.46% | motif file (matrix) |
pdf |
| 34 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-12 | -2.786e+01 | 0.0000 | 220.0 | 5.33% | 694.9 | 3.21% | motif file (matrix) |
pdf |
| 35 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-11 | -2.730e+01 | 0.0000 | 146.0 | 3.54% | 407.0 | 1.88% | motif file (matrix) |
pdf |
| 36 |  | SeqBias: TA-repeat | 1e-11 | -2.678e+01 | 0.0000 | 3643.0 | 88.34% | 18294.0 | 84.57% | motif file (matrix) |
pdf |
| 37 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-11 | -2.657e+01 | 0.0000 | 282.0 | 6.84% | 963.3 | 4.45% | motif file (matrix) |
pdf |
| 38 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-10 | -2.482e+01 | 0.0000 | 138.0 | 3.35% | 390.3 | 1.80% | motif file (matrix) |
pdf |
| 39 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-10 | -2.444e+01 | 0.0000 | 278.0 | 6.74% | 966.2 | 4.47% | motif file (matrix) |
pdf |
| 40 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.389e+01 | 0.0000 | 263.0 | 6.38% | 907.8 | 4.20% | motif file (matrix) |
pdf |
| 41 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-10 | -2.325e+01 | 0.0000 | 481.0 | 11.66% | 1885.9 | 8.72% | motif file (matrix) |
pdf |
| 42 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-9 | -2.294e+01 | 0.0000 | 426.0 | 10.33% | 1638.5 | 7.58% | motif file (matrix) |
pdf |
| 43 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-8 | -1.886e+01 | 0.0000 | 115.0 | 2.79% | 338.9 | 1.57% | motif file (matrix) |
pdf |
| 44 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-7 | -1.834e+01 | 0.0000 | 662.0 | 16.05% | 2816.8 | 13.02% | motif file (matrix) |
pdf |
| 45 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-7 | -1.752e+01 | 0.0000 | 1489.0 | 36.11% | 6941.5 | 32.09% | motif file (matrix) |
pdf |
| 46 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-7 | -1.728e+01 | 0.0000 | 180.0 | 4.36% | 616.8 | 2.85% | motif file (matrix) |
pdf |
| 47 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-7 | -1.679e+01 | 0.0000 | 124.0 | 3.01% | 389.0 | 1.80% | motif file (matrix) |
pdf |
| 48 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.598e+01 | 0.0000 | 54.0 | 1.31% | 127.2 | 0.59% | motif file (matrix) |
pdf |
| 49 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.464e+01 | 0.0000 | 1310.0 | 31.77% | 6114.8 | 28.27% | motif file (matrix) |
pdf |
| 50 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-6 | -1.400e+01 | 0.0000 | 90.0 | 2.18% | 272.6 | 1.26% | motif file (matrix) |
pdf |
| 51 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-5 | -1.341e+01 | 0.0000 | 423.0 | 10.26% | 1770.5 | 8.19% | motif file (matrix) |
pdf |
| 52 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.275e+01 | 0.0000 | 535.0 | 12.97% | 2318.6 | 10.72% | motif file (matrix) |
pdf |
| 53 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.266e+01 | 0.0000 | 697.0 | 16.90% | 3108.1 | 14.37% | motif file (matrix) |
pdf |
| 54 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-4 | -1.083e+01 | 0.0001 | 203.0 | 4.92% | 790.5 | 3.65% | motif file (matrix) |
pdf |
| 55 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -1.059e+01 | 0.0002 | 175.0 | 4.24% | 667.4 | 3.09% | motif file (matrix) |
pdf |
| 56 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-4 | -9.976e+00 | 0.0003 | 113.0 | 2.74% | 401.8 | 1.86% | motif file (matrix) |
pdf |
| 57 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.869e+00 | 0.0004 | 40.0 | 0.97% | 105.8 | 0.49% | motif file (matrix) |
pdf |
| 58 |  | NRF(NRF)/Promoter/Homer | 1e-3 | -8.917e+00 | 0.0009 | 82.0 | 1.99% | 279.8 | 1.29% | motif file (matrix) |
pdf |
| 59 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-3 | -8.807e+00 | 0.0010 | 82.0 | 1.99% | 280.6 | 1.30% | motif file (matrix) |
pdf |
| 60 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-3 | -8.662e+00 | 0.0011 | 42.0 | 1.02% | 119.8 | 0.55% | motif file (matrix) |
pdf |
| 61 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-3 | -8.590e+00 | 0.0012 | 65.0 | 1.58% | 211.0 | 0.98% | motif file (matrix) |
pdf |
| 62 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-3 | -8.590e+00 | 0.0012 | 65.0 | 1.58% | 211.0 | 0.98% | motif file (matrix) |
pdf |
| 63 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -8.129e+00 | 0.0018 | 72.0 | 1.75% | 244.5 | 1.13% | motif file (matrix) |
pdf |
| 64 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-3 | -7.874e+00 | 0.0023 | 3207.0 | 77.76% | 16335.3 | 75.52% | motif file (matrix) |
pdf |
| 65 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-3 | -7.710e+00 | 0.0027 | 1503.0 | 36.45% | 7348.1 | 33.97% | motif file (matrix) |
pdf |
| 66 |  | TATA-box/Drosophila-Promoters/Homer | 1e-3 | -7.460e+00 | 0.0034 | 196.0 | 4.75% | 810.9 | 3.75% | motif file (matrix) |
pdf |
| 67 |  | PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.255e+00 | 0.0041 | 75.0 | 1.82% | 265.0 | 1.23% | motif file (matrix) |
pdf |
| 68 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.096e+00 | 0.0047 | 741.0 | 17.97% | 3489.6 | 16.13% | motif file (matrix) |
pdf |
| 69 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.986e+00 | 0.0052 | 238.0 | 5.77% | 1017.9 | 4.71% | motif file (matrix) |
pdf |
| 70 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.805e+00 | 0.0061 | 241.0 | 5.84% | 1035.2 | 4.79% | motif file (matrix) |
pdf |
| 71 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.785e+00 | 0.0062 | 457.0 | 11.08% | 2085.2 | 9.64% | motif file (matrix) |
pdf |
| 72 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.752e+00 | 0.0063 | 896.0 | 21.73% | 4284.7 | 19.81% | motif file (matrix) |
pdf |
| 73 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-2 | -6.737e+00 | 0.0063 | 109.0 | 2.64% | 421.1 | 1.95% | motif file (matrix) |
pdf |
| 74 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.681e+00 | 0.0066 | 444.0 | 10.77% | 2024.7 | 9.36% | motif file (matrix) |
pdf |
| 75 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.575e+00 | 0.0072 | 164.0 | 3.98% | 676.3 | 3.13% | motif file (matrix) |
pdf |
| 76 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.313e+00 | 0.0092 | 46.0 | 1.12% | 151.6 | 0.70% | motif file (matrix) |
pdf |
| 77 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.217e+00 | 0.0100 | 458.0 | 11.11% | 2107.3 | 9.74% | motif file (matrix) |
pdf |
| 78 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.155e+00 | 0.0105 | 548.0 | 13.29% | 2556.9 | 11.82% | motif file (matrix) |
pdf |
| 79 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -6.127e+00 | 0.0107 | 352.0 | 8.54% | 1588.7 | 7.34% | motif file (matrix) |
pdf |
| 80 |  | Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.917e+00 | 0.0130 | 69.0 | 1.67% | 253.6 | 1.17% | motif file (matrix) |
pdf |
| 81 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -5.820e+00 | 0.0142 | 28.0 | 0.68% | 82.1 | 0.38% | motif file (matrix) |
pdf |
| 82 |  | Unknown3/Arabidopsis-Promoters/Homer | 1e-2 | -5.551e+00 | 0.0183 | 469.0 | 11.37% | 2183.1 | 10.09% | motif file (matrix) |
pdf |
| 83 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-2 | -5.526e+00 | 0.0186 | 100.0 | 2.42% | 397.4 | 1.84% | motif file (matrix) |
pdf |
| 84 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.476e+00 | 0.0193 | 172.0 | 4.17% | 734.3 | 3.39% | motif file (matrix) |
pdf |
| 85 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-2 | -5.430e+00 | 0.0200 | 246.0 | 5.97% | 1090.7 | 5.04% | motif file (matrix) |
pdf |
| 86 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.127e+00 | 0.0267 | 35.0 | 0.85% | 115.2 | 0.53% | motif file (matrix) |
pdf |
| 87 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.889e+00 | 0.0335 | 89.0 | 2.16% | 356.7 | 1.65% | motif file (matrix) |
pdf |