Information for 17-AGAGCGAG (Motif 11)


Reverse Opposite:

p-value:1e-24
log p-value:-5.566e+01
Information Content per bp:1.786
Number of Target Sequences with motif710.0
Percentage of Target Sequences with motif17.22%
Number of Background Sequences with motif2545.1
Percentage of Background Sequences with motif11.77%
Average Position of motif in Targets448.3 +/- 376.2bp
Average Position of motif in Background266.9 +/- 196.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AGAGCGAG
RGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGAG-
GAGAGAGAGA

Trl/dmmpmm(Down)/fly

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGAG---
GAGAGAGAGAGC

Trl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGAGCGAG-----
AGAGAGAGAGNAA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCGAG
RGAGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGAG-
GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGAGCGAG-
GAGAGAGCAA

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGAGCGAG
TGAGTG--

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGAG-----
GAGAGAGAGAGCAA

z/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGCGAG-
TTGAGTGATT