Information for 7-GCGRTGRG (Motif 4)


Reverse Opposite:

p-value:1e-43
log p-value:-1.004e+02
Information Content per bp:1.890
Number of Target Sequences with motif583.0
Percentage of Target Sequences with motif14.14%
Number of Background Sequences with motif1672.3
Percentage of Background Sequences with motif7.73%
Average Position of motif in Targets389.3 +/- 341.2bp
Average Position of motif in Background270.8 +/- 183.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TOD6?/SacCer-Promoters/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GCGRTGRG--
GCGATGAGMT

CHA4(MacIsaac)/Yeast

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCGRTGRG
TGCGATGAG

TOD6/MA0350.1/Jaspar

Match Rank:3
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----GCGRTGRG--------
NNANNGCGATGAGCTNNNNNN

DOT6/MA0351.1/Jaspar

Match Rank:4
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----GCGRTGRG--------
ANGANGCGATGAGGTGCNNNN

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCGRTGRG--
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCGRTGRG--
CGCGCTGAGCN

Run/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCGRTGRG
GGCGGTG--

SUT1?/SacCer-Promoters/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCGRTGRG
GCGCGGGG

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:9
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCGRTGRG
NGGGGCGGTG--

PHO2/PHO2_H2O2Hi/[](Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCGRTGRG
CGTGCGGTGCG