Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/It_1_S25_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4267
Total background sequences = 21064
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-200	-4.625e+02	26.95%	10.40%	299.7bp (216.3bp)	REB1(MacIsaac)/Yeast(0.994) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-91	-2.102e+02	25.66%	13.88%	321.9bp (243.4bp)	RSC3/MA0374.1/Jaspar(0.918) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-56	-1.300e+02	57.82%	45.66%	330.5bp (196.8bp)	hb/dmmpmm(SeSiMCMC)/fly(0.896) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-44	-1.016e+02	39.56%	29.51%	332.9bp (201.7bp)	TATA-box/SacCer-Promoters/Homer(0.888) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-40	-9.295e+01	11.91%	6.35%	363.9bp (200.3bp)	TOD6?/SacCer-Promoters/Homer(0.804) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-38	-8.882e+01	22.85%	15.23%	345.5bp (237.7bp)	SP2/MA0516.1/Jaspar(0.763) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-35	-8.246e+01	16.36%	10.10%	317.4bp (203.7bp)	OPI1/Literature(Harbison)/Yeast(0.752) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-31	-7.305e+01	25.19%	17.93%	349.2bp (210.8bp)	TDA9/MA0431.1/Jaspar(0.803) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-31	-7.277e+01	19.36%	12.93%	349.4bp (240.0bp)	SeqBias: CA-repeat(0.873) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-23	-5.359e+01	9.66%	5.75%	361.0bp (190.2bp)	FHL1(MacIsaac)/Yeast(0.770) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-19	-4.447e+01	9.63%	6.04%	318.0bp (197.3bp)	RPH1/Literature(Harbison)/Yeast(0.760) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-15	-3.572e+01	19.78%	15.16%	347.6bp (202.5bp)	STP4/MA0397.1/Jaspar(0.692) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-14	-3.366e+01	16.80%	12.64%	377.1bp (202.0bp)	SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast(0.704) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-13	-3.092e+01	4.87%	2.79%	332.4bp (187.9bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-12	-2.925e+01	2.72%	1.28%	302.2bp (201.9bp)	SD0002.1_at_AC_acceptor/Jaspar(0.873) More Information \| Similar Motifs Found	motif file (matrix)