Information for 7-GAGGTGAG (Motif 5)


Reverse Opposite:

p-value:1e-40
log p-value:-9.295e+01
Information Content per bp:1.946
Number of Target Sequences with motif508.0
Percentage of Target Sequences with motif11.91%
Number of Background Sequences with motif1336.5
Percentage of Background Sequences with motif6.35%
Average Position of motif in Targets402.4 +/- 363.9bp
Average Position of motif in Background275.3 +/- 200.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TOD6?/SacCer-Promoters/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GAGGTGAG--
GCGATGAGMT

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GAGGTGAG---
CAGGTAAGTAT

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GAGGTGAG-
CAGGTGAGG

TOD6/MA0350.1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTGAG--------
NNANNGCGATGAGCTNNNNNN

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTGAG
GTGGGGTGAT

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGGTGAG-
-AGGTGTGA

DOT6/MA0351.1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTGAG--------
ANGANGCGATGAGGTGCNNNN

z/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GAGGTGAG--
----TGAGTG

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGGTGAG-
-AGGTGTGA

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGGTGAG-
-AGGTGTGA