Information for 3-GGGAAAAA (Motif 3)


Reverse Opposite:

p-value:1e-56
log p-value:-1.300e+02
Information Content per bp:1.623
Number of Target Sequences with motif2467.0
Percentage of Target Sequences with motif57.82%
Number of Background Sequences with motif9616.1
Percentage of Background Sequences with motif45.66%
Average Position of motif in Targets384.8 +/- 330.5bp
Average Position of motif in Background279.5 +/- 196.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.98
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.90
Offset:2
Orientation:reverse strand
Alignment:GGGAAAAA
--AAAAAA

hb/dmmpmm(Down)/fly

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GGGAAAAA-
CATAAAAAA

hb/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:GGGAAAAA-
-ATAAAAAA

hb/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGGAAAAA-
CATAAAAAA

hb/MA0049.1/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGGAAAAA-
GCATAAAAAA

hb/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGGAAAAA
CAAAAAAA

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----GGGAAAAA--
TACTGGAAAAAAAA

RGT1(MacIsaac)/Yeast

Match Rank:8
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GGGAAAAA
GCCGGAAAAA

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GGGAAAAA
--TAAAAA

EDS1/MA0294.1/Jaspar

Match Rank:10
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGAAAAA-
CGGAAAAAT