Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Ct_800_S9_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4541
Total background sequences = 20537
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-195	-4.507e+02	23.74%	8.84%	295.9bp (220.7bp)	REB1(MacIsaac)/Yeast(0.989) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-78	-1.797e+02	42.33%	29.21%	342.2bp (209.0bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-75	-1.737e+02	40.04%	27.36%	331.9bp (238.0bp)	RSC30/MA0375.1/Jaspar(0.930) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-49	-1.139e+02	34.24%	24.40%	363.0bp (232.9bp)	SUT1/MA0399.1/Jaspar(0.776) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-46	-1.068e+02	38.52%	28.59%	354.1bp (207.4bp)	TATA-box/SacCer-Promoters/Homer(0.899) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-40	-9.387e+01	11.19%	5.93%	276.9bp (237.0bp)	STB4/STB4_YPD/[](Harbison)/Yeast(0.753) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-40	-9.280e+01	7.42%	3.31%	294.0bp (236.4bp)	TYE7/TYE7_YPD/39-CBF1(Harbison)/Yeast(0.981) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-33	-7.683e+01	17.64%	11.51%	335.7bp (237.8bp)	SeqBias: CA-repeat(0.879) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-28	-6.614e+01	9.21%	5.14%	356.6bp (198.9bp)	RAP1/MA0359.1/Jaspar(0.876) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-24	-5.645e+01	22.37%	16.45%	322.1bp (202.3bp)	GAGA-repeat/Arabidopsis-Promoters/Homer(0.773) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-19	-4.500e+01	6.96%	4.02%	351.6bp (193.8bp)	TOD6?/SacCer-Promoters/Homer(0.939) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-16	-3.830e+01	40.39%	34.39%	359.1bp (219.3bp)	MSN4(MacIsaac)/Yeast(0.812) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-13	-3.085e+01	22.15%	17.78%	338.9bp (189.3bp)	lbe/MA0231.1/Jaspar(0.788) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-11	-2.564e+01	4.49%	2.71%	328.4bp (190.0bp)	RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast(0.941) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-10	-2.440e+01	11.83%	8.92%	345.3bp (171.9bp)	SFP1/SacCer-Promoters/Homer(0.842) More Information \| Similar Motifs Found	motif file (matrix)