Information for 7-CGGCTCGA (Motif 6)


Reverse Opposite:

p-value:1e-40
log p-value:-9.387e+01
Information Content per bp:1.833
Number of Target Sequences with motif508.0
Percentage of Target Sequences with motif11.19%
Number of Background Sequences with motif1217.3
Percentage of Background Sequences with motif5.93%
Average Position of motif in Targets397.5 +/- 276.9bp
Average Position of motif in Background306.3 +/- 237.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STB4/STB4_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGA
TCGGNNCGA

STB4(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGA
TCGGNNCGA

XBP1/MA0414.1/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGGCTCGA--
---CTCGAGA

ERF069/MA0997.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTCGA
NGGCGGCGN--

STP1/MA0394.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGCTCGA
TGCGGCGC--

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGA
-NGCTN--

STP1(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGCTCGA
TGCGGCGC--

XBP1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CGGCTCGA--
---CTCGAAG

ERF11/MA1001.1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGGCTCGA
NTGNCGGCGN--

RSC3/MA0374.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGA
NNGCGCG-