Information for 5-GCGCSGCG (Motif 4)


Reverse Opposite:

p-value:1e-49
log p-value:-1.139e+02
Information Content per bp:1.586
Number of Target Sequences with motif1555.0
Percentage of Target Sequences with motif34.24%
Number of Background Sequences with motif5009.6
Percentage of Background Sequences with motif24.40%
Average Position of motif in Targets433.7 +/- 363.0bp
Average Position of motif in Background286.7 +/- 232.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SUT1/MA0399.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GCGCSGCG
-CCCCGCG

SUT1(MacIsaac)/Yeast

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GCGCSGCG
-CCCCGCG

STP1(MacIsaac)/Yeast

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCGCSGCG
GCGCCGCA

STP1/MA0394.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCGCSGCG
GCGCCGCA

SWI6(MacIsaac)/Yeast

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCGCSGCG
--GACGCG

IME1(MacIsaac)/Yeast

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCGCSGCG-
-CTCGGCGG

IME1/MA0320.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCGCSGCG-
-CTCGGCGG

RSC3/MA0374.1/Jaspar

Match Rank:8
Score:0.72
Offset:4
Orientation:forward strand
Alignment:GCGCSGCG---
----CGCGCGG

MBP1(MacIsaac)/Yeast

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCGCSGCG-
--GACGCGT

Mad/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCGCSGCG
CTGGCGCCGCG