Information for 15-AGAGTGAG (Motif 10)


Reverse Opposite:

p-value:1e-24
log p-value:-5.645e+01
Information Content per bp:1.805
Number of Target Sequences with motif1016.0
Percentage of Target Sequences with motif22.37%
Number of Background Sequences with motif3376.2
Percentage of Background Sequences with motif16.45%
Average Position of motif in Targets421.3 +/- 322.1bp
Average Position of motif in Background291.9 +/- 202.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGAG
RGAGAGAGAG

SeqBias: GA-repeat

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG-
GAGAGAGAGA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGAGTGAG-----
AGAGAGAGAGNAA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
RGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGAGTGAG---
-GAGAGAGCAA

z/dmmpmm(Down)/fly

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGTGAG
TGAGTG--

Trl/dmmpmm(Down)/fly

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGAG---
GAGAGAGAGAGC

BAS1(MacIsaac)/Yeast

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGAGTGAG
GNAAGAGTCA-

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGAGTGAG
-GAGTCA-