Homer de novo Motif Results (/srv/scratch/training_camp/tc2016/user23/analysis/motifs/Ct_300_S3_R1.trimmed.nodup_peaks.narrowPeak/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 4354
Total background sequences = 21568
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-228	-5.269e+02	23.06%	7.38%	298.2bp (206.7bp)	REB1(MacIsaac)/Yeast(0.993) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-102	-2.361e+02	27.96%	15.16%	298.2bp (228.5bp)	RSC3/MA0374.1/Jaspar(0.873) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-81	-1.885e+02	42.50%	28.80%	344.1bp (200.6bp)	PB0182.1_Srf_2/Jaspar(0.898) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-54	-1.251e+02	41.17%	30.01%	343.9bp (200.6bp)	TATA-box/SacCer-Promoters/Homer(0.895) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-50	-1.163e+02	11.88%	5.84%	356.1bp (200.8bp)	SPL14(SBP)/Arabidopsis thaliana/AthaMap(0.782) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-41	-9.581e+01	15.00%	8.66%	363.3bp (199.2bp)	dl/dmmpmm(SeSiMCMC)/fly(0.804) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-34	-7.949e+01	8.71%	4.38%	357.5bp (209.0bp)	SeqBias: CA-repeat(0.872) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-29	-6.691e+01	37.70%	29.70%	314.5bp (212.9bp)	SKN7(MacIsaac)/Yeast(0.839) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-29	-6.686e+01	19.55%	13.39%	321.7bp (195.2bp)	TRB2/MA1073.1/Jaspar(0.810) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-22	-5.207e+01	19.02%	13.62%	344.9bp (218.5bp)	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.933) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-21	-5.047e+01	4.62%	2.15%	283.8bp (213.3bp)	CMTA3/MA0970.1/Jaspar(0.752) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-17	-3.928e+01	6.64%	3.90%	320.4bp (180.9bp)	TOD6?/SacCer-Promoters/Homer(0.935) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-12	-2.871e+01	3.40%	1.78%	231.3bp (188.6bp)	NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast(0.755) More Information \| Similar Motifs Found	motif file (matrix)
14 *		1e-11	-2.750e+01	3.54%	1.91%	190.6bp (182.8bp)	Hand1::Tcf3/MA0092.1/Jaspar(0.707) More Information \| Similar Motifs Found	motif file (matrix)
15 *		1e-10	-2.479e+01	1.26%	0.44%	220.1bp (173.8bp)	Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer(0.831) More Information \| Similar Motifs Found	motif file (matrix)