Information for 5-CGTATATA (Motif 4)


Reverse Opposite:

p-value:1e-54
log p-value:-1.251e+02
Information Content per bp:1.624
Number of Target Sequences with motif1792.0
Percentage of Target Sequences with motif41.17%
Number of Background Sequences with motif6473.3
Percentage of Background Sequences with motif30.01%
Average Position of motif in Targets390.0 +/- 343.9bp
Average Position of motif in Background274.8 +/- 200.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/SacCer-Promoters/Homer

Match Rank:1
Score:0.90
Offset:2
Orientation:reverse strand
Alignment:CGTATATA----
--TATATAWDVV

MOT2/MA0379.1/Jaspar

Match Rank:2
Score:0.86
Offset:3
Orientation:forward strand
Alignment:CGTATATA
---ATATA

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CGTATATA--
-GTATATATA

Cf2/MA0015.1/Jaspar

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CGTATATA---
-GTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CGTATATA------
ANNNGGATATATCCNNN

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGTATATA--------
-GTATAAAAGGCGGGG

bin/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTATATA
-ATAAATA

NHP6A/MA0345.1/Jaspar

Match Rank:9
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------CGTATATA-------
ATGACCTATATATAAAAATGA

TBP(- other)/several species/AthaMap

Match Rank:10
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CGTATATA----
ACTATAAATACC