Information for 7-TGCACGGA (Motif 5)


Reverse Opposite:

p-value:1e-50
log p-value:-1.163e+02
Information Content per bp:1.822
Number of Target Sequences with motif517.0
Percentage of Target Sequences with motif11.88%
Number of Background Sequences with motif1259.1
Percentage of Background Sequences with motif5.84%
Average Position of motif in Targets451.3 +/- 356.1bp
Average Position of motif in Background275.6 +/- 200.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

SPL14/MA0586.1/Jaspar

Match Rank:2
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------TGCACGGA-----
CCCTNCTGTACGGACGNNA

FHL1(MacIsaac)/Yeast

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
ATGTACGGAT

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA--
ATGTACGGGTG

SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGCACGGA-
ATGTACGGGT

SFP1(MacIsaac)/Yeast

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA-
ATGTACGGGT

SPL5/MA1059.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCACGGA
TTGTACGGC

SPL11/MA1056.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGCACGGA-
TATCGTACGGAT

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGCACGGA
TTTGCATGGA

SPL12/MA1057.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGCACGGA
TGTACGGT