Information for 25-GGAGAGCG (Motif 15)


Reverse Opposite:

p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.953
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif95.1
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets264.5 +/- 220.1bp
Average Position of motif in Background288.4 +/- 173.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GGAGAGCG
RGAGAGAG

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGAGAGCG-
GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAGCG-
GAGAGAGCAA

PDR8/MA0354.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGCG
ACGGAGAT--

Trl/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGCG---
AGAGAGAGAGNAA

YNR063W/MA0432.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGCG
TCGGAGAT--

SeqBias: GA-repeat

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGAGCG---
-GAGAGAGAGA

STP4/MA0397.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGAGCG--
-GATAGCGCA

z/dmmpmm(Down)/fly

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGAGAGCG
--TGAGTG

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGAGAGCG
TGGGGA---