In [1]:
# Parameters
data_name = "Snai2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:34:40,383 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Snai2: Motif: M08973_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Snai2: #8

Cell typeModiscoHomer
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0005369369999999999

Pattern: motif18.motif

Significance: 0.0420829

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.040514800000000004

Pattern: motif10.motif

Significance: 0.0500844

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0392406

Pattern: motif9.motif

Significance: 0.0118121

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0160652

/

Pattern: metacluster_1/pattern_17

Significance: 0.00829637

Pattern: motif13.motif

Significance: 0.0320696

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00757755

Pattern: motif9.motif

Significance: 0.010372399999999999

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0009179189999999999

Pattern: motif17.motif

Significance: 0.039338599999999994

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.017612299999999997

Pattern: motif11.motif

Significance: 0.0402121

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00721981

Pattern: motif14.motif

Significance: 0.0215833

Unique Cell types only TF-MoDISco finds Snai2: #26

Cell typeModiscoHomer
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00793162

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.010629799999999998

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0522639

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0345565

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0033955999999999995

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00472961

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.023023

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0105124

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00157666

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0250518

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0362582

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.017981200000000003

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0008074530000000001

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0243897

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00166579

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.028702699999999998

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.030020799999999997

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.022888400000000003

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00544895

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.058225599999999995

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0501092

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0496708

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00757783

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0320982

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0488336

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00977301

Absent
Unique Cell types only Homer finds Snai2: #2

Cell typeModiscoHomer
A20;B-lymphoma;D;EnAbsent

Pattern: motif13.motif

Significance: 0.024615599999999998

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.019734799999999997