In [1]:
# Parameters
data_name = "Nhlh2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:23:52,452 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nhlh2: Motif: M00756_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nhlh2: #11

Cell typeModiscoHomer
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.014357299999999998

Pattern: motif18.motif

Significance: 0.0420829

smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.014966899999999998

Pattern: motif13.motif

Significance: 0.017336700000000003

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00317823

Pattern: motif15.motif

Significance: 0.0523702

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.056139699999999994

Pattern: motif15.motif

Significance: 0.0456233

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00797547

Pattern: motif9.motif

Significance: 0.0346041

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00425916

Pattern: motif9.motif

Significance: 0.010372399999999999

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00403773

Pattern: motif13.motif

Significance: 0.029048599999999997

DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0163

Pattern: motif17.motif

Significance: 0.033786699999999996

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00345819

Pattern: motif11.motif

Significance: 0.025964099999999997

iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0225557

Pattern: motif3.motif

Significance: 0.028678500000000003

ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00194494

Pattern: motif14.motif

Significance: 0.019340200000000002

Unique Cell types only TF-MoDISco finds Nhlh2: #25

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0300031

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00450189

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0280781

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.0489541

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00589029

Absent
B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00204487

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00258229

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00200356

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0415661

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0100696

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0450088

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0390611

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0100564

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.025176499999999997

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0170666

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.022227599999999997

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0297964

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0201228

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0329644

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.020986

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.00646614

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00298954

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0187336

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0250099

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.057282000000000007

Absent
Unique Cell types only Homer finds Nhlh2: #5

Cell typeModiscoHomer
wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.05359069999999999

NPC;F129;A;GEOAbsent

Pattern: motif10.motif

Significance: 0.026230400000000004

prePLSM_B;A;GEOAbsent

Pattern: motif22.motif

Significance: 0.023848599999999998

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.019734799999999997

Heart;D;EnAbsent

Pattern: motif13.motif

Significance: 0.0192508